Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000230.1

Orthogroup ID

OG0005556

Physical Location & Seq

Genomic Coordinates Reverse (-)

30872 .. 33954

Gene Structure 3083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000230.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgcttcggtggcagcaggctggaacgcagggctgcagggagggggaagcaggggctgctgtgcaaggttgcaagcgcacgggcgcgcgggctgcagtgaaggctcagctagctcgggctaggggctgctttgtgaatgagttttggttttctgttttgtggttagagtcgtctatttccatcaccttgaccgacctggatgtgcttgattgtcccatttgctatgaatccttgaccatccccgtctttcaggctttatcagttttgaaattgcagaagggcaatcaaatgcctgaagattaccccagatcttccagagaagcagctgcagttttccagtacgctcaagtatacgactctgacaagaaaattgtcaagcatatgagacccataccacaagagcttatggagtcccttgatggagaacttgattttcttggatcgtatttttttgttatttatttcttgttgttgtcaggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

160

Amino Acids

17.96

Weight (kDa)

5.44

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342681 RchiOBHm_Chr4g0385031
rosa_laevigata	RLG00000008562 RLG00000014249 RLG00000030660
rosa_multiflora	Rmu_sc0000230.1_g000007 Rmu_sc0003052.1_g000011 Rmu_sc0006159.1_g000013 Rmu_sc0008336.1_g000014 Rmu_sc0010676.1_g000001 Rmu_sc0018406.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116070 Rroxscaffold_7G00190900
rosa_rugosa	Rorug02G0507600
rosa_samantha	Rh2DG203900 Rh3DG272000 Rh4AG220600 Rh4CG002500 Rh4CG169000 Rh5AG255100 Rh5BG250800 Rh6BG140300 Rh6DG123700 Rh7AG342200 Rh7CG359800 Rh7CG474900
rosa_wichuraiana	Rw2G004640 Rw4G016300 Rw7G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	2 cut(s)	86, 88
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	1 cut(s)	341
AgsI	TTSAA	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	4 cut(s)	109, 113, 326, 403
AluI	AGCT	4 cut(s)	109, 113, 326, 403
Alw26I	GTCTC	1 cut(s)	379
AlwI	GGATC	1 cut(s)	448
AlwNI	CAGNNNCTG	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	114
ApeKI	GCWGC	7 cut(s)	13, 33, 56, 92, 126, 323, 326
AspLEI	GCGC	3 cut(s)	78, 86, 88
AsuHPI	GGTGA	1 cut(s)	175
AsuNHI	GCTAGC	1 cut(s)	109
AvaI	CYCGRG	1 cut(s)	114
BbvI	GCAGC	7 cut(s)	20, 25, 43, 79, 113, 313, 335
BccI	CCATC	3 cut(s)	188, 245, 413
BciT130I	CCWGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	379
BfaI	CTAG	2 cut(s)	110, 120
BfmI	CTRYAG	3 cut(s)	34, 93, 327
BglII	AGATCT	1 cut(s)	308
BisI	GCNGC	7 cut(s)	14, 34, 57, 93, 127, 324, 327
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	7 cut(s)	15, 35, 58, 94, 128, 325, 328
Bme1390I	CCNGG	1 cut(s)	197
BmeT110I	CYCGRG	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	197
BmtI	GCTAGC	1 cut(s)	113
Bpu1102I	GCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	330
BsaI	GGTCTC	1 cut(s)	379
Bse1I	ACTGG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	197
BseGI	GGATG	2 cut(s)	205, 237
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	1 cut(s)	337
BsePI	GCGCGC	1 cut(s)	84
BseXI	GCAGC	7 cut(s)	20, 25, 43, 79, 113, 313, 335
Bsh1236I	CGCG	2 cut(s)	86, 88
BsiHKCI	CYCGRG	1 cut(s)	114
BslFI	GGGAC	2 cut(s)	198, 397
BsmAI	GTCTC	1 cut(s)	379
BsmFI	GGGAC	2 cut(s)	198, 397
Bso31I	GGTCTC	1 cut(s)	379
BsoBI	CYCGRG	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	308, 440
Bsp1720I	GCTNAGC	1 cut(s)	105
BspACI	CCGC	1 cut(s)	88
BspCNI	CTCAG	1 cut(s)	118
BspFNI	CGCG	2 cut(s)	86, 88
BspMAI	CTGCAG	3 cut(s)	38, 97, 331
BspOI	GCTAGC	1 cut(s)	113
BspPI	GGATC	1 cut(s)	448
BspTNI	GGTCTC	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	337
BssHII	GCGCGC	1 cut(s)	84
BssMI	GATC	2 cut(s)	308, 440
BssNAI	GTATAC	1 cut(s)	352
Bst1107I	GTATAC	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstC8I	GCNNGC	5 cut(s)	18, 74, 86, 90, 111
BstDEI	CTNAG	1 cut(s)	105
BstF5I	GGATG	2 cut(s)	205, 237
BstFNI	CGCG	2 cut(s)	86, 88
BstHHI	GCGC	3 cut(s)	78, 86, 88
BstKTI	GATC	2 cut(s)	311, 443
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	2 cut(s)	308, 440
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 56, 92, 101, 110
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	3 cut(s)	34, 93, 327
BstUI	CGCG	2 cut(s)	86, 88
BstV1I	GCAGC	7 cut(s)	20, 25, 43, 79, 113, 313, 335
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BstZ17I	GTATAC	1 cut(s)	352
BtsCI	GGATG	2 cut(s)	205, 237
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	5 cut(s)	18, 74, 86, 90, 111
CaiI	CAGNNNCTG	1 cut(s)	56
CfoI	GCGC	3 cut(s)	78, 86, 88
Csp6I	GTAC	1 cut(s)	340
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	2 cut(s)	310, 442
DpnII	GATC	2 cut(s)	308, 440
Eco31I	GGTCTC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	195
FaiI	YATR	6 cut(s)	225, 352, 381, 383, 392, 407
FaqI	GGGAC	2 cut(s)	198, 397
FauI	CCCGC	1 cut(s)	81
FauNDI	CATATG	1 cut(s)	381
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	7 cut(s)	14, 34, 57, 93, 127, 324, 327
FokI	GGATG	2 cut(s)	212, 224
Fsp4HI	GCNGC	7 cut(s)	14, 34, 57, 93, 127, 324, 327
FspBI	CTAG	2 cut(s)	110, 120
GlaI	GCGC	3 cut(s)	77, 85, 87
GluI	GCNGC	7 cut(s)	14, 34, 57, 93, 127, 324, 327
HhaI	GCGC	3 cut(s)	78, 86, 88
Hin6I	GCGC	3 cut(s)	76, 84, 86
HinP1I	GCGC	3 cut(s)	76, 84, 86
HinfI	GANTC	4 cut(s)	167, 227, 356, 410
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	1 cut(s)	361
Hpy188III	TCNNGA	1 cut(s)	315
Hpy8I	GTNNAC	1 cut(s)	352
HpyAV	CCTTC	2 cut(s)	94, 271
HpyCH4V	TGCA	6 cut(s)	36, 64, 72, 95, 274, 329
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 56, 92, 101, 110
HpyF3I	CTNAG	1 cut(s)	105
HspAI	GCGC	3 cut(s)	76, 84, 86
Kzo9I	GATC	2 cut(s)	308, 440
Lsp1109I	GCAGC	7 cut(s)	20, 25, 43, 79, 113, 313, 335
MaeI	CTAG	2 cut(s)	110, 120
MalI	GATC	2 cut(s)	310, 442
MboI	GATC	2 cut(s)	308, 440
MboII	GAAGA	2 cut(s)	303, 308
MflI	RGATCY	1 cut(s)	308
MluCI	AATT	2 cut(s)	269, 369
MlyI	GAGTC	3 cut(s)	176, 350, 419
MnlI	CCTC	1 cut(s)	34
MseI	TTAA	1 cut(s)	481
MspA1I	CMGCKG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	197
MvnI	CGCG	2 cut(s)	86, 88
MwoI	GCNNNNNNNGC	5 cut(s)	10, 56, 92, 101, 110
NdeI	CATATG	1 cut(s)	381
NdeII	GATC	2 cut(s)	308, 440
NheI	GCTAGC	1 cut(s)	109
PauI	GCGCGC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	7 cut(s)	15, 35, 58, 94, 128, 325, 328
PleI	GAGTC	3 cut(s)	175, 350, 418
PpsI	GAGTC	3 cut(s)	175, 350, 418
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PstI	CTGCAG	3 cut(s)	38, 97, 331
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	308
PteI	GCGCGC	1 cut(s)	84
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	481
SatI	GCNGC	7 cut(s)	14, 34, 57, 93, 127, 324, 327
Sau3AI	GATC	2 cut(s)	308, 440
SchI	GAGTC	3 cut(s)	176, 350, 419
ScrFI	CCNGG	1 cut(s)	197
SetI	ASST	8 cut(s)	70, 111, 115, 188, 198, 328, 405, 481
SfcI	CTRYAG	3 cut(s)	34, 93, 327
SmlI	CTYRAG	1 cut(s)	345
SmoI	CTYRAG	1 cut(s)	345
Sse9I	AATT	2 cut(s)	269, 369
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	2 cut(s)	110, 120
StyD4I	CCNGG	1 cut(s)	195
TaqII	GACCGA	1 cut(s)	206
TasI	AATT	2 cut(s)	269, 369
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	481
Tru9I	TTAA	1 cut(s)	481
TscAI	CASTG	1 cut(s)	102
TseI	GCWGC	7 cut(s)	13, 33, 56, 92, 126, 323, 326
TspDTI	ATGAA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	102
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	2 cut(s)	110, 120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.