Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005556

Physical Location & Seq

Genomic Coordinates Forward (+)

537919 .. 540412

Gene Structure 2494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG002500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGATGAAGCTATCTACGTACACTGCAACGTACCTAGCTTATATATTCAATCAGGCTTTATCAGTTTTGAAATTGCAGAAGGGCAATCAAATGCTTGAAGATTACCCCAGATCTTTCAGAGAAGCAGCTGCAGTTTTCCAGCATGCTCAAGTATATGACTCTGACAAGAAAATTGTCAAGCATATGAGACCCATACCACAAGAGCTTGTGGAGTCCCTTGATGGAGAACTTGATTTCCTTGGATCGTATTTTTTTGTTATTTATTTCTTGTTGTTGTCAGGCATTGCAATTGTTGAAAGAAAATTGGACCCCATAAGTATGGAGGTCTTTGATCATTTCCCTAGTTCCATTTCTAGACATCGGTCAGATCCCATTAAGAGCCAAATTACTCATCACTTTCAGAGATCTGAGACTGCTACTGTATCTACACAAATATATAAGGAAGCTGAGAAGTTTGCTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

154

Amino Acids

17.88

Weight (kDa)

6.59

Isoelectric Point (pI)

26.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342681 RchiOBHm_Chr4g0385031
rosa_laevigata	RLG00000008562 RLG00000014249 RLG00000030660
rosa_multiflora	Rmu_sc0000230.1_g000007 Rmu_sc0003052.1_g000011 Rmu_sc0006159.1_g000013 Rmu_sc0008336.1_g000014 Rmu_sc0010676.1_g000001 Rmu_sc0018406.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116070 Rroxscaffold_7G00190900
rosa_rugosa	Rorug02G0507600
rosa_samantha	Rh2DG203900 Rh3DG272000 Rh4AG220600 Rh4CG002500 Rh4CG169000 Rh5AG255100 Rh5BG250800 Rh6BG140300 Rh6DG123700 Rh7AG342200 Rh7CG359800 Rh7CG474900
rosa_wichuraiana	Rw2G004640 Rw4G016300 Rw7G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	250, 362
AfaI	GTAC	2 cut(s)	20, 32
AgsI	TTSAA	4 cut(s)	49, 70, 98, 296
AloI	GAACNNNNNNTCC	2 cut(s)	219, 251
AluBI	AGCT	5 cut(s)	10, 38, 128, 205, 446
AluI	AGCT	5 cut(s)	10, 38, 128, 205, 446
Alw26I	GTCTC	2 cut(s)	181, 404
AlwI	GGATC	2 cut(s)	250, 362
ApeKI	GCWGC	2 cut(s)	125, 128
AspS9I	GGNCC	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	307
BbvI	GCAGC	2 cut(s)	115, 137
BccI	CCATC	1 cut(s)	215
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	181, 404
BfaI	CTAG	3 cut(s)	35, 342, 354
BfmI	CTRYAG	1 cut(s)	129
BglII	AGATCT	2 cut(s)	110, 404
BisI	GCNGC	2 cut(s)	126, 129
BlsI	GCNGC	2 cut(s)	127, 130
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	309
BoxI	GACNNNNGTC	1 cut(s)	361
BpuEI	CTTGAG	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	2 cut(s)	399, 438
BseXI	GCAGC	2 cut(s)	115, 137
BslFI	GGGAC	1 cut(s)	199
BsmAI	GTCTC	2 cut(s)	181, 404
BsmFI	GGGAC	1 cut(s)	199
Bso31I	GGTCTC	1 cut(s)	181
Bsp143I	GATC	5 cut(s)	110, 242, 331, 367, 404
BspCNI	CTCAG	2 cut(s)	400, 439
BspLI	GGNNCC	1 cut(s)	309
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	2 cut(s)	250, 362
BspTNI	GGTCTC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	5 cut(s)	110, 242, 331, 367, 404
BssT1I	CCWWGG	1 cut(s)	238
Bst4CI	ACNGT	1 cut(s)	421
BstBAI	YACGTR	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	2 cut(s)	408, 447
BstKTI	GATC	5 cut(s)	113, 245, 334, 370, 407
BstMAI	GTCTC	2 cut(s)	181, 404
BstMBI	GATC	5 cut(s)	110, 242, 331, 367, 404
BstNSI	RCATGY	1 cut(s)	146
BstPAI	GACNNNNGTC	1 cut(s)	361
BstSFI	CTRYAG	1 cut(s)	129
BstSNI	TACGTA	1 cut(s)	18
BstV1I	GCAGC	2 cut(s)	115, 137
BstX2I	RGATCY	3 cut(s)	110, 367, 404
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstYI	RGATCY	3 cut(s)	110, 367, 404
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	307
Csp6I	GTAC	2 cut(s)	19, 31
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	7 cut(s)	10, 38, 56, 128, 205, 381, 446
CviKI_1	RGCY	7 cut(s)	10, 38, 56, 128, 205, 381, 446
CviQI	GTAC	2 cut(s)	19, 31
DdeI	CTNAG	2 cut(s)	408, 447
DpnI	GATC	5 cut(s)	112, 244, 333, 369, 406
DpnII	GATC	5 cut(s)	110, 242, 331, 367, 404
Eco105I	TACGTA	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	238
Eco31I	GGTCTC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	1 cut(s)	146
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	1 cut(s)	142
FauNDI	CATATG	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	2 cut(s)	126, 129
Fsp4HI	GCNGC	2 cut(s)	126, 129
FspBI	CTAG	3 cut(s)	35, 342, 354
GluI	GCNGC	2 cut(s)	126, 129
Hin1II	CATG	1 cut(s)	146
HinfI	GANTC	2 cut(s)	158, 212
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	5 cut(s)	119, 163, 367, 402, 409
Hpy188III	TCNNGA	1 cut(s)	354
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	2 cut(s)	17, 29
HpyCH4V	TGCA	4 cut(s)	26, 76, 131, 287
HpyF3I	CTNAG	2 cut(s)	408, 447
HpySE526I	ACGT	2 cut(s)	17, 29
Hsp92II	CATG	1 cut(s)	146
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	5 cut(s)	110, 242, 331, 367, 404
LpnPI	CCDG	4 cut(s)	38, 121, 152, 264
Lsp1109I	GCAGC	2 cut(s)	115, 137
MaeI	CTAG	3 cut(s)	35, 342, 354
MaeII	ACGT	2 cut(s)	17, 29
MalI	GATC	5 cut(s)	112, 244, 333, 369, 406
MboI	GATC	5 cut(s)	110, 242, 331, 367, 404
MboII	GAAGA	1 cut(s)	110
MfeI	CAATTG	1 cut(s)	288
MflI	RGATCY	3 cut(s)	110, 367, 404
MluCI	AATT	5 cut(s)	71, 171, 288, 302, 384
MlyI	GAGTC	2 cut(s)	152, 221
MnlI	CCTC	1 cut(s)	316
MseI	TTAA	1 cut(s)	375
MslI	CAYNNNNRTG	1 cut(s)	317
MspA1I	CMGCKG	1 cut(s)	128
MunI	CAATTG	1 cut(s)	288
NdeI	CATATG	1 cut(s)	183
NdeII	GATC	5 cut(s)	110, 242, 331, 367, 404
NlaIII	CATG	1 cut(s)	146
NlaIV	GGNNCC	1 cut(s)	309
NspI	RCATGY	1 cut(s)	146
PaeI	GCATGC	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	127, 130
PleI	GAGTC	2 cut(s)	152, 220
PpsI	GAGTC	2 cut(s)	152, 220
Ppu21I	YACGTR	1 cut(s)	18
PshAI	GACNNNNGTC	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	133
PsuI	RGATCY	3 cut(s)	110, 367, 404
PvuII	CAGCTG	1 cut(s)	128
RsaI	GTAC	2 cut(s)	20, 32
RsaNI	GTAC	2 cut(s)	19, 31
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	2 cut(s)	126, 129
Sau3AI	GATC	5 cut(s)	110, 242, 331, 367, 404
Sau96I	GGNCC	1 cut(s)	307
SchI	GAGTC	2 cut(s)	152, 221
SetI	ASST	9 cut(s)	12, 20, 32, 36, 40, 130, 207, 327, 448
SfcI	CTRYAG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
SnaBI	TACGTA	1 cut(s)	18
SphI	GCATGC	1 cut(s)	146
Sse9I	AATT	5 cut(s)	71, 171, 288, 302, 384
SspMI	CTAG	3 cut(s)	35, 342, 354
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	2 cut(s)	20, 32
TaqII	GACCGA	1 cut(s)	351
TasI	AATT	5 cut(s)	71, 171, 288, 302, 384
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	1 cut(s)	28
TseI	GCWGC	2 cut(s)	125, 128
TspDTI	ATGAA	1 cut(s)	20
TspRI	CASTG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	307
XbaI	TCTAGA	1 cut(s)	353
XceI	RCATGY	1 cut(s)	146
XspI	CTAG	3 cut(s)	35, 342, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.