Rroxscaffold_7G00190900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0005556
Physical Location & Seq
Forward (+)
31329461 .. 31329724
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00190900.1

Sequence Viewer

Length: 264 bp
ATGTTTCGAGGCTTGCAAGAAGACGGATGTGCACAGGAACGGGAAAAAGATGCAGTGGGTGTGCGTTGGCTTGTTTGCGCAGCAGGGATGCTTCGGTGGCAGCAGGCTGGAACGCATGGCTGCAGGGAGGGGGCAGCAGGGGCTGCTGTGCAAGGTTGCAAGTGCACGGCCGCGCGGGCTGCAGCGAAGGCTCGGCTAGCTCGGGCTAGGGGCTGCTTTGTGAATGAGTTTTGGTTTTCTGTTTTGTGGTTAGAGTCGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.45

Weight (kDa)

8.83

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 79
AccII CGCG 2 cut(s) 173, 175
AciI CCGC 2 cut(s) 171, 175
AcoI YGGCCR 1 cut(s) 168
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw21I GWGCWC 2 cut(s) 34, 167
Alw44I GTGCAC 2 cut(s) 30, 163
AlwNI CAGNNNCTG 1 cut(s) 143
Ama87I CYCGRG 1 cut(s) 201
AoxI GGCC 1 cut(s) 168
ApaLI GTGCAC 2 cut(s) 30, 163
ApeKI GCWGC 8 cut(s) 80, 100, 120, 134, 143, 179, 182, 213
AspLEI GCGC 2 cut(s) 80, 175
AsuNHI GCTAGC 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 201
BaeGI GKGCMC 2 cut(s) 34, 167
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 2 cut(s) 34, 167
BbvI GCAGC 8 cut(s) 92, 107, 112, 130, 146, 166, 194, 200
BceAI ACGGC 1 cut(s) 183
BfaI CTAG 2 cut(s) 197, 207
BfmI CTRYAG 2 cut(s) 121, 180
BglI GCCNNNNNGGC 1 cut(s) 176
BisI GCNGC 9 cut(s) 81, 101, 121, 135, 144, 171, 180, 183, 214
BlsI GCNGC 9 cut(s) 82, 102, 122, 136, 145, 172, 181, 184, 215
BmeT110I CYCGRG 1 cut(s) 201
BmsI GCATC 2 cut(s) 40, 78
BmtI GCTAGC 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 27
BseGI GGATG 2 cut(s) 32, 93
BseSI GKGCMC 2 cut(s) 34, 167
BseX3I CGGCCG 1 cut(s) 168
BseXI GCAGC 8 cut(s) 92, 107, 112, 130, 146, 166, 194, 200
Bsh1236I CGCG 2 cut(s) 173, 175
Bsh1285I CGRYCG 1 cut(s) 171
BshFI GGCC 1 cut(s) 170
BsiEI CGRYCG 1 cut(s) 171
BsiHKAI GWGCWC 2 cut(s) 34, 167
BsiHKCI CYCGRG 1 cut(s) 201
BsnI GGCC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 201
Bsp1286I GDGCHC 2 cut(s) 34, 167
BspACI CCGC 2 cut(s) 171, 175
BspANI GGCC 1 cut(s) 170
BspFNI CGCG 2 cut(s) 173, 175
BspMAI CTGCAG 2 cut(s) 125, 184
BspOI GCTAGC 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 143
BstC8I GCNNGC 4 cut(s) 14, 105, 177, 198
BstF5I GGATG 2 cut(s) 32, 93
BstFNI CGCG 2 cut(s) 173, 175
BstHHI GCGC 2 cut(s) 80, 175
BstMCI CGRYCG 1 cut(s) 171
BstMWI GCNNNNNNNGC 7 cut(s) 97, 140, 143, 176, 179, 188, 197
BstSFI CTRYAG 2 cut(s) 121, 180
BstSLI GKGCMC 2 cut(s) 34, 167
BstUI CGCG 2 cut(s) 173, 175
BstV1I GCAGC 8 cut(s) 92, 107, 112, 130, 146, 166, 194, 200
BstV2I GAAGAC 1 cut(s) 27
BstZI CGGCCG 1 cut(s) 168
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 2 cut(s) 32, 93
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 60
Cac8I GCNNGC 4 cut(s) 14, 105, 177, 198
CaiI CAGNNNCTG 1 cut(s) 143
CfoI GCGC 2 cut(s) 80, 175
CviAII CATG 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 168
EagI CGGCCG 1 cut(s) 168
EclXI CGGCCG 1 cut(s) 168
Eco52I CGGCCG 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 201
FaeI CATG 1 cut(s) 119
FaiI YATR 1 cut(s) 117
FatI CATG 1 cut(s) 115
FauI CCCGC 1 cut(s) 168
Fnu4HI GCNGC 9 cut(s) 81, 101, 121, 135, 144, 171, 180, 183, 214
FokI GGATG 2 cut(s) 39, 100
Fsp4HI GCNGC 9 cut(s) 81, 101, 121, 135, 144, 171, 180, 183, 214
FspBI CTAG 2 cut(s) 197, 207
FspI TGCGCA 1 cut(s) 79
GlaI GCGC 2 cut(s) 79, 174
GluI GCNGC 9 cut(s) 81, 101, 121, 135, 144, 171, 180, 183, 214
HaeIII GGCC 1 cut(s) 170
HhaI GCGC 2 cut(s) 80, 175
Hin1II CATG 1 cut(s) 119
Hin6I GCGC 2 cut(s) 78, 173
HinP1I GCGC 2 cut(s) 78, 173
HinfI GANTC 1 cut(s) 254
Hpy166II GTNNAC 2 cut(s) 32, 165
Hpy8I GTNNAC 2 cut(s) 32, 165
HpyAV CCTTC 1 cut(s) 181
HpyCH4V TGCA 8 cut(s) 16, 32, 53, 123, 151, 159, 165, 182
HpyF10VI GCNNNNNNNGC 7 cut(s) 97, 140, 143, 176, 179, 188, 197
Hsp92II CATG 1 cut(s) 119
HspAI GCGC 2 cut(s) 78, 173
LpnPI CCDG 6 cut(s) 20, 69, 89, 93, 109, 123
Lsp1109I GCAGC 8 cut(s) 92, 107, 112, 130, 146, 166, 194, 200
LweI GCATC 2 cut(s) 40, 78
MaeI CTAG 2 cut(s) 197, 207
MboII GAAGA 1 cut(s) 32
MhlI GDGCHC 2 cut(s) 34, 167
MlyI GAGTC 1 cut(s) 263
MnlI CCTC 1 cut(s) 121
MvnI CGCG 2 cut(s) 173, 175
MwoI GCNNNNNNNGC 7 cut(s) 97, 140, 143, 176, 179, 188, 197
NheI GCTAGC 1 cut(s) 196
NlaIII CATG 1 cut(s) 119
NmeAIII GCCGAG 1 cut(s) 172
NsbI TGCGCA 1 cut(s) 79
PkrI GCNGC 9 cut(s) 82, 102, 122, 136, 145, 172, 181, 184, 215
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
PstI CTGCAG 2 cut(s) 125, 184
PstNI CAGNNNCTG 1 cut(s) 143
SatI GCNGC 9 cut(s) 81, 101, 121, 135, 144, 171, 180, 183, 214
SchI GAGTC 1 cut(s) 263
SduI GDGCHC 2 cut(s) 34, 167
SetI ASST 2 cut(s) 157, 202
SfaNI GCATC 2 cut(s) 40, 78
SfcI CTRYAG 2 cut(s) 121, 180
SsiI CCGC 2 cut(s) 171, 175
SspMI CTAG 2 cut(s) 197, 207
TaqI TCGA 1 cut(s) 7
TauI GCSGC 1 cut(s) 173
TscAI CASTG 1 cut(s) 60
TseI GCWGC 8 cut(s) 80, 100, 120, 134, 143, 179, 182, 213
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 1 cut(s) 60
VneI GTGCAC 2 cut(s) 30, 163
XspI CTAG 2 cut(s) 197, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.