Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008336.1

Orthogroup ID

OG0005556

Physical Location & Seq

Genomic Coordinates Reverse (-)

46868 .. 49404

Gene Structure 2537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008336.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atgtgcacaggaacggaaaaaagatgcagtggtgtgcgttggcttgtttgcgcagcagggatgcttcggtggcagcaggctggaacgcagggcttcaggaagggggcagcaggggctgctgtgcaaggttgcaagcacacgggcgctcgggctgcagcgaaggctcggctagctcgggctaggggctgctttgtgaatgagttttggttttctgttttgtggttagagtcgattgggaaatctagaaccttctctcctattcctattcctagtttgataaggcacactaaacttgattttccttcaacactagaaatgttgtgcagcttagttggagttttcctgcagaggattggtggcagagacactctgcttctggtgtattacggagtgatagtctcagctcgactccaacctattcacatgcttcatcagaggatttgctatacagaaccaaaaaagcttggagacaacttggctgggttcaaagaatctatagtcaccgaaccacaagggctgttgaactcatggaatgaatcccttcacttctgcaactggcatggagttacttgcggcacaaggcatcaaagaataacagccttgaaactagggggttctgacatgcaaggaaaaactgacattggcaacctctcttttgtcaggttcatcagccttcgagataacagcttctccggcaagattccacagcaagttgatcatttgttcagactccggcatataaatctcagtaagaacaagttgaaggggggaactccagtcaacctgaccttctgcccggaactgagcatcataagttttggatcagaccgccttaccggcgatattcaatcagagattggctcactgttgaagctggtgtaccttaatcttcagacaaacaatctgacaggggaggcatcccacattcctggtgaaatctttcatcaatcaatgtactttccttcacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

323

Amino Acids

35.83

Weight (kDa)

9.67

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342681 RchiOBHm_Chr4g0385031
rosa_laevigata	RLG00000008562 RLG00000014249 RLG00000030660
rosa_multiflora	Rmu_sc0000230.1_g000007 Rmu_sc0003052.1_g000011 Rmu_sc0006159.1_g000013 Rmu_sc0008336.1_g000014 Rmu_sc0010676.1_g000001 Rmu_sc0018406.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116070 Rroxscaffold_7G00190900
rosa_rugosa	Rorug02G0507600
rosa_samantha	Rh2DG203900 Rh3DG272000 Rh4AG220600 Rh4CG002500 Rh4CG169000 Rh5AG255100 Rh5BG250800 Rh6BG140300 Rh6DG123700 Rh7AG342200 Rh7CG359800 Rh7CG474900
rosa_wichuraiana	Rw2G004640 Rw4G016300 Rw7G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	52
AciI	CCGC	2 cut(s)	573, 829
AclWI	GGATC	1 cut(s)	829
AcuI	CTGAAG	2 cut(s)	79, 875
AfaI	GTAC	2 cut(s)	881, 956
AgsI	TTSAA	7 cut(s)	306, 487, 523, 604, 763, 848, 871
AjnI	CCWGG	1 cut(s)	928
AloI	GAACNNNNNNTCC	2 cut(s)	238, 270
AluBI	AGCT	6 cut(s)	173, 327, 404, 463, 687, 874
AluI	AGCT	6 cut(s)	173, 327, 404, 463, 687, 874
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	3 cut(s)	357, 403, 462
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	1 cut(s)	829
AlwNI	CAGNNNCTG	1 cut(s)	116
Ama87I	CYCGRG	2 cut(s)	147, 174
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	8 cut(s)	53, 73, 107, 116, 152, 155, 186, 324
Asp700I	GAANNNNTTC	2 cut(s)	540, 939
AspLEI	GCGC	2 cut(s)	53, 146
AsuC2I	CCSGG	1 cut(s)	797
AsuHPI	GGTGA	2 cut(s)	493, 944
AsuNHI	GCTAGC	1 cut(s)	169
AvaI	CYCGRG	2 cut(s)	147, 174
BaeGI	GKGCMC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	863, 895
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	8 cut(s)	65, 85, 103, 119, 139, 167, 173, 336
BciT130I	CCWGG	1 cut(s)	930
BclI	TGATCA	1 cut(s)	715
BcnI	CCSGG	1 cut(s)	797
BcoDI	GTCTC	3 cut(s)	357, 403, 462
BfaI	CTAG	6 cut(s)	170, 180, 243, 270, 311, 608
BfmI	CTRYAG	3 cut(s)	153, 344, 495
BfoI	RGCGCY	1 cut(s)	147
BglI	GCCNNNNNGGC	1 cut(s)	837
BisI	GCNGC	9 cut(s)	54, 74, 108, 117, 153, 156, 187, 325, 574
BlsI	GCNGC	9 cut(s)	55, 75, 109, 118, 154, 157, 188, 326, 575
Bme1390I	CCNGG	2 cut(s)	797, 930
BmeT110I	CYCGRG	2 cut(s)	147, 174
BmrFI	CCNGG	2 cut(s)	797, 930
BmsI	GCATC	5 cut(s)	14, 51, 592, 816, 926
BmtI	GCTAGC	1 cut(s)	173
BplI	GAGNNNNNCTC	2 cut(s)	845, 877
BpmI	CTGGAG	1 cut(s)	759
BpuMI	CCSGG	1 cut(s)	797
BsaXI	ACNNNNNCTCC	6 cut(s)	238, 268, 381, 411, 674, 704
Bse118I	RCCGGY	1 cut(s)	836
Bse1I	ACTGG	2 cut(s)	560, 776
BseBI	CCWGG	1 cut(s)	930
BseGI	GGATG	2 cut(s)	66, 917
BseMII	CTCAG	3 cut(s)	414, 760, 794
BseNI	ACTGG	2 cut(s)	560, 776
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	8 cut(s)	65, 85, 103, 119, 139, 167, 173, 336
BseYI	CCCAGC	1 cut(s)	479
BsgI	GTGCAG	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	2 cut(s)	147, 174
BsiSI	CCGG	4 cut(s)	693, 733, 797, 837
BsmAI	GTCTC	3 cut(s)	357, 403, 462
BsoBI	CYCGRG	2 cut(s)	147, 174
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	715, 821
BspACI	CCGC	2 cut(s)	573, 829
BspCNI	CTCAG	3 cut(s)	413, 759, 795
BspMAI	CTGCAG	2 cut(s)	157, 348
BspOI	GCTAGC	1 cut(s)	173
BspPI	GGATC	1 cut(s)	829
BsrFI	RCCGGY	1 cut(s)	836
BsrI	ACTGG	2 cut(s)	560, 776
BssAI	RCCGGY	1 cut(s)	836
BssMI	GATC	2 cut(s)	715, 821
Bst2UI	CCWGG	1 cut(s)	930
Bst4CI	ACNGT	2 cut(s)	867, 969
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstC8I	GCNNGC	3 cut(s)	78, 134, 171
BstDEI	CTNAG	4 cut(s)	328, 400, 746, 803
BstF5I	GGATG	2 cut(s)	66, 917
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	2 cut(s)	53, 146
BstKTI	GATC	2 cut(s)	718, 824
BstMAI	GTCTC	3 cut(s)	357, 403, 462
BstMBI	GATC	2 cut(s)	715, 821
BstMWI	GCNNNNNNNGC	8 cut(s)	70, 113, 116, 152, 161, 170, 693, 837
BstNI	CCWGG	1 cut(s)	930
BstNSI	RCATGY	2 cut(s)	427, 625
BstSCI	CCNGG	2 cut(s)	795, 928
BstSFI	CTRYAG	3 cut(s)	153, 344, 495
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	8 cut(s)	65, 85, 103, 119, 139, 167, 173, 336
BstXI	CCANNNNNNTGG	1 cut(s)	929
BtsCI	GGATG	2 cut(s)	66, 917
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	2 cut(s)	34, 863
Cac8I	GCNNGC	3 cut(s)	78, 134, 171
CaiI	CAGNNNCTG	1 cut(s)	116
CfoI	GCGC	2 cut(s)	53, 146
Cfr10I	RCCGGY	1 cut(s)	836
Csp6I	GTAC	2 cut(s)	880, 955
CviAII	CATG	4 cut(s)	424, 528, 560, 622
CviQI	GTAC	2 cut(s)	880, 955
DdeI	CTNAG	4 cut(s)	328, 400, 746, 803
DpnI	GATC	2 cut(s)	717, 823
DpnII	GATC	2 cut(s)	715, 821
Eco57I	CTGAAG	2 cut(s)	79, 875
Eco88I	CYCGRG	2 cut(s)	147, 174
EcoRII	CCWGG	1 cut(s)	928
FaeI	CATG	4 cut(s)	427, 531, 563, 625
FaiI	YATR	9 cut(s)	425, 447, 497, 529, 561, 623, 738, 740, 812
FatI	CATG	4 cut(s)	423, 527, 559, 621
FbaI	TGATCA	1 cut(s)	715
Fnu4HI	GCNGC	9 cut(s)	54, 74, 108, 117, 153, 156, 187, 325, 574
FokI	GGATG	2 cut(s)	73, 904
Fsp4HI	GCNGC	9 cut(s)	54, 74, 108, 117, 153, 156, 187, 325, 574
FspBI	CTAG	6 cut(s)	170, 180, 243, 270, 311, 608
FspI	TGCGCA	1 cut(s)	52
GlaI	GCGC	2 cut(s)	52, 145
GluI	GCNGC	9 cut(s)	54, 74, 108, 117, 153, 156, 187, 325, 574
GsaI	CCCAGC	1 cut(s)	483
GsuI	CTGGAG	1 cut(s)	759
HaeII	RGCGCY	1 cut(s)	147
HapII	CCGG	4 cut(s)	693, 733, 797, 837
HhaI	GCGC	2 cut(s)	53, 146
Hin1II	CATG	4 cut(s)	427, 531, 563, 625
Hin6I	GCGC	2 cut(s)	51, 144
HinP1I	GCGC	2 cut(s)	51, 144
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	6 cut(s)	227, 408, 491, 536, 700, 729
HpaII	CCGG	4 cut(s)	693, 733, 797, 837
HphI	GGTGA	2 cut(s)	493, 944
Hpy166II	GTNNAC	3 cut(s)	6, 781, 880
Hpy188I	TCNGA	7 cut(s)	435, 619, 728, 826, 853, 894, 906
Hpy188III	TCNNGA	3 cut(s)	97, 243, 677
Hpy8I	GTNNAC	3 cut(s)	6, 781, 880
HpyAV	CCTTC	9 cut(s)	94, 154, 259, 312, 551, 683, 757, 799, 972
HpyCH4III	ACNGT	2 cut(s)	867, 969
HpyCH4V	TGCA	9 cut(s)	6, 27, 124, 132, 155, 324, 346, 552, 625
HpyF10VI	GCNNNNNNNGC	8 cut(s)	70, 113, 116, 152, 161, 170, 693, 837
HpyF3I	CTNAG	4 cut(s)	328, 400, 746, 803
Hsp92II	CATG	4 cut(s)	427, 531, 563, 625
HspAI	GCGC	2 cut(s)	51, 144
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	2 cut(s)	715, 821
Lsp1109I	GCAGC	8 cut(s)	65, 85, 103, 119, 139, 167, 173, 336
LweI	GCATC	5 cut(s)	14, 51, 592, 816, 926
MaeI	CTAG	6 cut(s)	170, 180, 243, 270, 311, 608
MaeIII	GTNAC	2 cut(s)	499, 565
MalI	GATC	2 cut(s)	717, 823
MboI	GATC	2 cut(s)	715, 821
MboII	GAAGA	1 cut(s)	881
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	3 cut(s)	236, 402, 723
MmeI	TCCRAC	2 cut(s)	313, 436
MnlI	CCTC	4 cut(s)	342, 429, 659, 907
MroXI	GAANNNNTTC	2 cut(s)	540, 939
MseI	TTAA	1 cut(s)	885
MspI	CCGG	4 cut(s)	693, 733, 797, 837
MspR9I	CCNGG	2 cut(s)	797, 930
MvaI	CCWGG	1 cut(s)	930
MwoI	GCNNNNNNNGC	8 cut(s)	70, 113, 116, 152, 161, 170, 693, 837
NciI	CCSGG	1 cut(s)	797
NdeII	GATC	2 cut(s)	715, 821
NheI	GCTAGC	1 cut(s)	169
NlaIII	CATG	4 cut(s)	427, 531, 563, 625
NmeAIII	GCCGAG	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	499
NsbI	TGCGCA	1 cut(s)	52
NspI	RCATGY	2 cut(s)	427, 625
PdmI	GAANNNNTTC	2 cut(s)	540, 939
PfeI	GAWTC	3 cut(s)	491, 536, 700
PkrI	GCNGC	9 cut(s)	55, 75, 109, 118, 154, 157, 188, 326, 575
PleI	GAGTC	3 cut(s)	235, 402, 723
PpsI	GAGTC	3 cut(s)	235, 402, 723
Psp6I	CCWGG	1 cut(s)	928
PspFI	CCCAGC	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	928
PstI	CTGCAG	2 cut(s)	157, 348
PstNI	CAGNNNCTG	1 cut(s)	116
RsaI	GTAC	2 cut(s)	881, 956
RsaNI	GTAC	2 cut(s)	880, 955
SaqAI	TTAA	1 cut(s)	885
SatI	GCNGC	9 cut(s)	54, 74, 108, 117, 153, 156, 187, 325, 574
Sau3AI	GATC	2 cut(s)	715, 821
SchI	GAGTC	3 cut(s)	236, 402, 723
ScrFI	CCNGG	2 cut(s)	797, 930
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	5 cut(s)	14, 51, 592, 816, 926
SfcI	CTRYAG	3 cut(s)	153, 344, 495
SsiI	CCGC	2 cut(s)	573, 829
SspMI	CTAG	6 cut(s)	170, 180, 243, 270, 311, 608
StyD4I	CCNGG	2 cut(s)	795, 928
TaaI	ACNGT	2 cut(s)	867, 969
TaqI	TCGA	3 cut(s)	230, 406, 676
TatI	WGTACW	1 cut(s)	954
TauI	GCSGC	1 cut(s)	576
TfiI	GAWTC	3 cut(s)	491, 536, 700
Tru1I	TTAA	1 cut(s)	885
Tru9I	TTAA	1 cut(s)	885
TscAI	CASTG	2 cut(s)	34, 870
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	8 cut(s)	53, 73, 107, 116, 152, 155, 186, 324
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	4 cut(s)	419, 549, 655, 932
TspGWI	ACGGA	2 cut(s)	29, 402
TspRI	CASTG	2 cut(s)	34, 870
VneI	GTGCAC	1 cut(s)	4
XbaI	TCTAGA	1 cut(s)	242
XceI	RCATGY	2 cut(s)	427, 625
XmnI	GAANNNNTTC	2 cut(s)	540, 939
XspI	CTAG	6 cut(s)	170, 180, 243, 270, 311, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.