Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005556

Physical Location & Seq

Genomic Coordinates Forward (+)

36998732 .. 37000520

Gene Structure 1789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG169000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTACCTAGCTTATATATTCAATCAGGCTTTATCAATTTTGAAATTGCAGAAGGGCAATCAAATGCCTGAAGATTACCCCAGATCTTTCAGAGAAGCAGCTGCAGTTTTCCAGCATGCTCAAGTATACGACTCTGACAAGAAAATTGTCAAGCATATGAGACCCATACCACAAGAGCTTGTGGAGTCCCTTGATGGAGAACTTGATTTCCTTGGATCGTATTTTTTTGTTATTTATTTCTTGTTGTTGTCAGGCATTGCAATTGCTGAAGGAAAATTGGACCCCATAAGTATGGAGGTCTTTGATCATTTCCCTAGTTCCATTTCTAGACATCGGTCAGATCCCATTAAGAGCCAAATTACTCATCACTTTCAGAGATCTGAGACTGCTACTGTATCTACACAAGAATTTAGGATGGAACTGATGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

143

Amino Acids

16.56

Weight (kDa)

5.83

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342681 RchiOBHm_Chr4g0385031
rosa_laevigata	RLG00000008562 RLG00000014249 RLG00000030660
rosa_multiflora	Rmu_sc0000230.1_g000007 Rmu_sc0003052.1_g000011 Rmu_sc0006159.1_g000013 Rmu_sc0008336.1_g000014 Rmu_sc0010676.1_g000001 Rmu_sc0018406.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116070 Rroxscaffold_7G00190900
rosa_rugosa	Rorug02G0507600
rosa_samantha	Rh2DG203900 Rh3DG272000 Rh4AG220600 Rh4CG002500 Rh4CG169000 Rh5AG255100 Rh5BG250800 Rh6BG140300 Rh6DG123700 Rh7AG342200 Rh7CG359800 Rh7CG474900
rosa_wichuraiana	Rw2G004640 Rw4G016300 Rw7G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AclWI	GGATC	2 cut(s)	223, 335
AcsI	RAATTY	1 cut(s)	407
AcuI	CTGAAG	2 cut(s)	90, 288
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	2 cut(s)	22, 43
AloI	GAACNNNNNNTCC	2 cut(s)	192, 224
AluBI	AGCT	3 cut(s)	11, 101, 178
AluI	AGCT	3 cut(s)	11, 101, 178
Alw26I	GTCTC	2 cut(s)	154, 377
AlwI	GGATC	2 cut(s)	223, 335
ApeKI	GCWGC	2 cut(s)	98, 101
ApoI	RAATTY	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	280
AvaII	GGWCC	1 cut(s)	280
BbvI	GCAGC	2 cut(s)	88, 110
BccI	CCATC	2 cut(s)	188, 409
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	2 cut(s)	154, 377
BfaI	CTAG	3 cut(s)	8, 315, 327
BfmI	CTRYAG	1 cut(s)	102
BglII	AGATCT	2 cut(s)	83, 377
BisI	GCNGC	2 cut(s)	99, 102
BlsI	GCNGC	2 cut(s)	100, 103
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	282
BoxI	GACNNNNGTC	1 cut(s)	334
BpuEI	CTTGAG	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	211
Bse3DI	GCAATG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	1 cut(s)	420
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	372
BseXI	GCAGC	2 cut(s)	88, 110
BslFI	GGGAC	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	154, 377
BsmFI	GGGAC	1 cut(s)	172
Bso31I	GGTCTC	1 cut(s)	154
Bsp143I	GATC	5 cut(s)	83, 215, 304, 340, 377
BspCNI	CTCAG	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	282
BspMAI	CTGCAG	1 cut(s)	106
BspPI	GGATC	2 cut(s)	223, 335
BspTNI	GGTCTC	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	5 cut(s)	83, 215, 304, 340, 377
BssNAI	GTATAC	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	211
Bst1107I	GTATAC	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	394
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	381
BstF5I	GGATG	1 cut(s)	420
BstKTI	GATC	5 cut(s)	86, 218, 307, 343, 380
BstMAI	GTCTC	2 cut(s)	154, 377
BstMBI	GATC	5 cut(s)	83, 215, 304, 340, 377
BstNSI	RCATGY	1 cut(s)	119
BstPAI	GACNNNNGTC	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	88, 110
BstX2I	RGATCY	3 cut(s)	83, 340, 377
BstXI	CCANNNNNNTGG	1 cut(s)	292
BstYI	RGATCY	3 cut(s)	83, 340, 377
BstZ17I	GTATAC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	420
Cac8I	GCNNGC	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	5 cut(s)	11, 29, 101, 178, 354
CviKI_1	RGCY	5 cut(s)	11, 29, 101, 178, 354
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	5 cut(s)	85, 217, 306, 342, 379
DpnII	GATC	5 cut(s)	83, 215, 304, 340, 377
Eco130I	CCWWGG	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	280
Eco57I	CTGAAG	2 cut(s)	90, 288
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	1 cut(s)	119
FaiI	YATR	9 cut(s)	15, 17, 117, 127, 156, 158, 167, 287, 293
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	1 cut(s)	115
FauNDI	CATATG	1 cut(s)	156
FbaI	TGATCA	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	99, 102
FokI	GGATG	1 cut(s)	427
Fsp4HI	GCNGC	2 cut(s)	99, 102
FspBI	CTAG	3 cut(s)	8, 315, 327
GluI	GCNGC	2 cut(s)	99, 102
Hin1II	CATG	1 cut(s)	119
HinfI	GANTC	2 cut(s)	131, 185
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	5 cut(s)	92, 136, 340, 375, 382
Hpy188III	TCNNGA	1 cut(s)	327
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	2 cut(s)	46, 263
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4V	TGCA	3 cut(s)	49, 104, 260
HpyF3I	CTNAG	1 cut(s)	381
Hsp92II	CATG	1 cut(s)	119
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	5 cut(s)	83, 215, 304, 340, 377
LpnPI	CCDG	5 cut(s)	11, 81, 94, 125, 237
Lsp1109I	GCAGC	2 cut(s)	88, 110
MaeI	CTAG	3 cut(s)	8, 315, 327
MalI	GATC	5 cut(s)	85, 217, 306, 342, 379
MboI	GATC	5 cut(s)	83, 215, 304, 340, 377
MboII	GAAGA	1 cut(s)	83
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	3 cut(s)	83, 340, 377
MluCI	AATT	8 cut(s)	36, 44, 144, 261, 275, 357, 407, 427
MlyI	GAGTC	2 cut(s)	125, 194
MnlI	CCTC	1 cut(s)	289
MseI	TTAA	2 cut(s)	348, 430
MslI	CAYNNNNRTG	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	101
MunI	CAATTG	1 cut(s)	261
NdeI	CATATG	1 cut(s)	156
NdeII	GATC	5 cut(s)	83, 215, 304, 340, 377
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	1 cut(s)	282
NspI	RCATGY	1 cut(s)	119
PaeI	GCATGC	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	100, 103
PleI	GAGTC	2 cut(s)	125, 193
PpsI	GAGTC	2 cut(s)	125, 193
PshAI	GACNNNNGTC	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	106
PsuI	RGATCY	3 cut(s)	83, 340, 377
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	348, 430
SatI	GCNGC	2 cut(s)	99, 102
Sau3AI	GATC	5 cut(s)	83, 215, 304, 340, 377
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	2 cut(s)	125, 194
SetI	ASST	5 cut(s)	9, 13, 103, 180, 300
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
SphI	GCATGC	1 cut(s)	119
Sse9I	AATT	8 cut(s)	36, 44, 144, 261, 275, 357, 407, 427
SspMI	CTAG	3 cut(s)	8, 315, 327
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	394
TaqII	GACCGA	1 cut(s)	324
TasI	AATT	8 cut(s)	36, 44, 144, 261, 275, 357, 407, 427
Tru1I	TTAA	2 cut(s)	348, 430
Tru9I	TTAA	2 cut(s)	348, 430
TseI	GCWGC	2 cut(s)	98, 101
VpaK11BI	GGWCC	1 cut(s)	280
XapI	RAATTY	1 cut(s)	407
XbaI	TCTAGA	1 cut(s)	326
XceI	RCATGY	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	3 cut(s)	8, 315, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.