Rw2G004640

exonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005556
Physical Location & Seq
Reverse (-)
4373466 .. 4374198
733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G004640.1

Sequence Viewer

Length: 369 bp
ATGCCTGAAGATTACCCCAGATCTTTCAGAGAAGCAGCTGCAGTTTTCCAGTATGCTCAAGTATACGACTCTGACAAGAAAATTGTCAAGCATATGAGACCCATACCACAAGAGCTTGTGGAGTCCCTTGATGGAGAACTTGATTTCCTTGAATCGTATTTTTTTGTTATTTATTTCTTGTTGTTGTCAGGCATTGCAATTGCTGAAGGAAAATTGGACCCCATAAGTATGGAGGTCTTTGATCATTTCCCTAGTTCCATTTCTAGACATCGGTCAGATCCCATTAAGAGCCAAATTACTCATCACTTTCAGAGATCTGAGACTGCTACTGTATCTACACAAGAATTTAGGATGGAACTGATGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03430 map03430
Pfam Domains
Protein Families
XPG_I XPG_N

Protein Analysis

122

Amino Acids

14.22

Weight (kDa)

5.12

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 63
AclWI GGATC 1 cut(s) 272
AcsI RAATTY 1 cut(s) 344
AcuI CTGAAG 2 cut(s) 27, 225
AgsI TTSAA 1 cut(s) 152
AloI GAACNNNNNNTCC 2 cut(s) 129, 161
AluBI AGCT 2 cut(s) 38, 115
AluI AGCT 2 cut(s) 38, 115
Alw26I GTCTC 2 cut(s) 91, 314
AlwI GGATC 1 cut(s) 272
ApeKI GCWGC 2 cut(s) 35, 38
ApoI RAATTY 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 217
AvaII GGWCC 1 cut(s) 217
BbvI GCAGC 2 cut(s) 25, 47
BccI CCATC 2 cut(s) 125, 346
BclI TGATCA 1 cut(s) 241
BcoDI GTCTC 2 cut(s) 91, 314
BfaI CTAG 2 cut(s) 252, 264
BfmI CTRYAG 1 cut(s) 39
BglII AGATCT 2 cut(s) 20, 314
BisI GCNGC 2 cut(s) 36, 39
BlsI GCNGC 2 cut(s) 37, 40
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 219
BoxI GACNNNNGTC 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 192
BseGI GGATG 1 cut(s) 357
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 1 cut(s) 49
BseXI GCAGC 2 cut(s) 25, 47
BslFI GGGAC 1 cut(s) 109
BsmAI GTCTC 2 cut(s) 91, 314
BsmFI GGGAC 1 cut(s) 109
Bso31I GGTCTC 1 cut(s) 91
Bsp143I GATC 4 cut(s) 20, 241, 277, 314
BspCNI CTCAG 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 219
BspMAI CTGCAG 1 cut(s) 43
BspPI GGATC 1 cut(s) 272
BspTNI GGTCTC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 1 cut(s) 49
BssMI GATC 4 cut(s) 20, 241, 277, 314
BssNAI GTATAC 1 cut(s) 64
Bst1107I GTATAC 1 cut(s) 64
Bst4CI ACNGT 1 cut(s) 331
BstDEI CTNAG 1 cut(s) 318
BstF5I GGATG 1 cut(s) 357
BstKTI GATC 4 cut(s) 23, 244, 280, 317
BstMAI GTCTC 2 cut(s) 91, 314
BstMBI GATC 4 cut(s) 20, 241, 277, 314
BstPAI GACNNNNGTC 1 cut(s) 271
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 25, 47
BstX2I RGATCY 3 cut(s) 20, 277, 314
BstXI CCANNNNNNTGG 1 cut(s) 229
BstYI RGATCY 3 cut(s) 20, 277, 314
BstZ17I GTATAC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 357
Cfr13I GGNCC 1 cut(s) 217
CviJI RGCY 3 cut(s) 38, 115, 291
CviKI_1 RGCY 3 cut(s) 38, 115, 291
DdeI CTNAG 1 cut(s) 318
DpnI GATC 4 cut(s) 22, 243, 279, 316
DpnII GATC 4 cut(s) 20, 241, 277, 314
Eco31I GGTCTC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 217
Eco57I CTGAAG 2 cut(s) 27, 225
FaiI YATR 7 cut(s) 54, 64, 93, 95, 104, 224, 230
FaqI GGGAC 1 cut(s) 109
FauNDI CATATG 1 cut(s) 93
FbaI TGATCA 1 cut(s) 241
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 2 cut(s) 36, 39
FokI GGATG 1 cut(s) 364
Fsp4HI GCNGC 2 cut(s) 36, 39
FspBI CTAG 2 cut(s) 252, 264
GluI GCNGC 2 cut(s) 36, 39
HinfI GANTC 3 cut(s) 68, 122, 152
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 5 cut(s) 29, 73, 277, 312, 319
Hpy188III TCNNGA 1 cut(s) 264
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4V TGCA 2 cut(s) 41, 197
HpyF3I CTNAG 1 cut(s) 318
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 4 cut(s) 20, 241, 277, 314
LpnPI CCDG 4 cut(s) 18, 31, 62, 174
Lsp1109I GCAGC 2 cut(s) 25, 47
MaeI CTAG 2 cut(s) 252, 264
MalI GATC 4 cut(s) 22, 243, 279, 316
MboI GATC 4 cut(s) 20, 241, 277, 314
MboII GAAGA 1 cut(s) 20
MfeI CAATTG 1 cut(s) 198
MflI RGATCY 3 cut(s) 20, 277, 314
MluCI AATT 6 cut(s) 81, 198, 212, 294, 344, 364
MlyI GAGTC 2 cut(s) 62, 131
MnlI CCTC 1 cut(s) 226
MseI TTAA 2 cut(s) 285, 367
MslI CAYNNNNRTG 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 38
MunI CAATTG 1 cut(s) 198
NdeI CATATG 1 cut(s) 93
NdeII GATC 4 cut(s) 20, 241, 277, 314
NlaIV GGNNCC 1 cut(s) 219
PfeI GAWTC 1 cut(s) 152
PkrI GCNGC 2 cut(s) 37, 40
PleI GAGTC 2 cut(s) 62, 130
PpsI GAGTC 2 cut(s) 62, 130
PshAI GACNNNNGTC 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 1 cut(s) 217
PstI CTGCAG 1 cut(s) 43
PsuI RGATCY 3 cut(s) 20, 277, 314
PvuII CAGCTG 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 227
SaqAI TTAA 2 cut(s) 285, 367
SatI GCNGC 2 cut(s) 36, 39
Sau3AI GATC 4 cut(s) 20, 241, 277, 314
Sau96I GGNCC 1 cut(s) 217
SchI GAGTC 2 cut(s) 62, 131
SetI ASST 3 cut(s) 40, 117, 237
SfcI CTRYAG 1 cut(s) 39
SinI GGWCC 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
Sse9I AATT 6 cut(s) 81, 198, 212, 294, 344, 364
SspMI CTAG 2 cut(s) 252, 264
TaaI ACNGT 1 cut(s) 331
TaqII GACCGA 1 cut(s) 261
TasI AATT 6 cut(s) 81, 198, 212, 294, 344, 364
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 2 cut(s) 285, 367
Tru9I TTAA 2 cut(s) 285, 367
TseI GCWGC 2 cut(s) 35, 38
VpaK11BI GGWCC 1 cut(s) 217
XapI RAATTY 1 cut(s) 344
XbaI TCTAGA 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 2 cut(s) 252, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.