Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005556

Physical Location & Seq

Genomic Coordinates Reverse (-)

2058351 .. 2061645

Gene Structure 3295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G002500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGACGAAGTTGTACAGGTTACGAGATAACCTTTTCTCCAACACAGTAAATAATTCTGGAAGGAGGAATAGTTCAGCCGTGCTAACAGATACCAATCCTTATGGAAGACTCAGGGATCCTGCTCCTACTGGATTTCAGCCTTCTTCATCAGTTGGTGTTACTCATGGTCTCGGTCGACATACTACTCTAACTCAAAGTATGGATCATCTTGGACTTTCCCATAATTTAGATCATCCTTCTTCACCAAGGCCATGGGCATCACAGGCTTTATCAGTTTTGAAATTGCAGAAGGGCAATCAAATGCCTGAAGATTACCCCAGATCTTTCAGAGAAGCAGCTGCAGTTTTCCAGTATGCTCAAGTATACGACTCTGACAAGAAAATTGTCAAGCATATGAGACCCATACCACAAGAGCTTGTGGAGTCCCTTGATGGAGAACTTGATTTCCTTGAATCGTATTTTTTTGATGGAACTGATGAATTAAATACTTATCTACACAAGTATCGCATAGAGTTGGATCAACATCTTGGTGCTCTTGTGGGGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0016604 GO:0016607 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0070013 GO:0090567 GO:0090700 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

182

Amino Acids

20.6

Weight (kDa)

6.7

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342681 RchiOBHm_Chr4g0385031
rosa_laevigata	RLG00000008562 RLG00000014249 RLG00000030660
rosa_multiflora	Rmu_sc0000230.1_g000007 Rmu_sc0003052.1_g000011 Rmu_sc0006159.1_g000013 Rmu_sc0008336.1_g000014 Rmu_sc0010676.1_g000001 Rmu_sc0018406.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116070 Rroxscaffold_7G00190900
rosa_rugosa	Rorug02G0507600
rosa_samantha	Rh2DG203900 Rh3DG272000 Rh4AG220600 Rh4CG002500 Rh4CG169000 Rh5AG255100 Rh5BG250800 Rh6BG140300 Rh6DG123700 Rh7AG342200 Rh7CG359800 Rh7CG474900
rosa_wichuraiana	Rw2G004640 Rw4G016300 Rw7G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	175, 363
AclWI	GGATC	4 cut(s)	110, 123, 210, 525
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	280, 452
AloI	GAACNNNNNNTCC	4 cut(s)	55, 87, 429, 461
AluBI	AGCT	2 cut(s)	338, 415
AluI	AGCT	2 cut(s)	338, 415
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	2 cut(s)	173, 391
AlwI	GGATC	4 cut(s)	110, 123, 210, 525
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	2 cut(s)	335, 338
AsuHPI	GGTGA	1 cut(s)	234
BaeI	ACNNNNGTAYC	2 cut(s)	485, 518
BamHI	GGATCC	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	535
BbvI	GCAGC	2 cut(s)	325, 347
BccI	CCATC	2 cut(s)	425, 461
BceAI	ACGGC	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	173, 391
BfmI	CTRYAG	1 cut(s)	339
BglII	AGATCT	1 cut(s)	320
BisI	GCNGC	2 cut(s)	336, 339
BlsI	GCNGC	2 cut(s)	337, 340
BmiI	GGNNCC	1 cut(s)	117
BmsI	GCATC	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	342
BsaBI	GATNNNNATC	2 cut(s)	93, 522
BsaI	GGTCTC	2 cut(s)	173, 391
BsaJI	CCNNGG	2 cut(s)	245, 251
BsaXI	ACNNNNNCTCC	4 cut(s)	20, 50, 55, 85
Bse1I	ACTGG	2 cut(s)	133, 349
Bse8I	GATNNNNATC	2 cut(s)	93, 522
BseDI	CCNNGG	2 cut(s)	245, 251
BseGI	GGATG	1 cut(s)	232
BseJI	GATNNNNATC	2 cut(s)	93, 522
BseMII	CTCAG	1 cut(s)	124
BseNI	ACTGG	2 cut(s)	133, 349
BseXI	GCAGC	2 cut(s)	325, 347
Bsh1285I	CGRYCG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	250
BsiEI	CGRYCG	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	535
BslFI	GGGAC	1 cut(s)	409
BsmAI	GTCTC	2 cut(s)	173, 391
BsmFI	GGGAC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	250
Bso31I	GGTCTC	2 cut(s)	173, 391
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp1407I	TGTACA	1 cut(s)	12
Bsp143I	GATC	5 cut(s)	115, 202, 229, 320, 517
Bsp19I	CCATGG	1 cut(s)	251
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	117
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	4 cut(s)	110, 123, 210, 525
BspTNI	GGTCTC	2 cut(s)	173, 391
BsrGI	TGTACA	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	133, 349
BssECI	CCNNGG	2 cut(s)	245, 251
BssMI	GATC	5 cut(s)	115, 202, 229, 320, 517
BssNAI	GTATAC	1 cut(s)	364
BssT1I	CCWWGG	2 cut(s)	245, 251
Bst1107I	GTATAC	1 cut(s)	364
Bst4CI	ACNGT	1 cut(s)	46
BstAUI	TGTACA	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	110
BstDSI	CCRYGG	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	5 cut(s)	118, 205, 232, 323, 520
BstMAI	GTCTC	2 cut(s)	173, 391
BstMBI	GATC	5 cut(s)	115, 202, 229, 320, 517
BstMCI	CGRYCG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	325, 347
BstV2I	GAAGAC	1 cut(s)	112
BstX2I	RGATCY	2 cut(s)	115, 320
BstXI	CCANNNNNNTGG	1 cut(s)	252
BstYI	RGATCY	2 cut(s)	115, 320
BstZ17I	GTATAC	1 cut(s)	364
BsuRI	GGCC	1 cut(s)	250
BtgI	CCRYGG	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	2 cut(s)	164, 252
CviJI	RGCY	6 cut(s)	77, 139, 250, 266, 338, 415
CviKI_1	RGCY	6 cut(s)	77, 139, 250, 266, 338, 415
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	5 cut(s)	117, 204, 231, 322, 519
DpnII	GATC	5 cut(s)	115, 202, 229, 320, 517
Eco130I	CCWWGG	2 cut(s)	245, 251
Eco31I	GGTCTC	2 cut(s)	173, 391
Eco57I	CTGAAG	1 cut(s)	327
EcoT14I	CCWWGG	2 cut(s)	245, 251
ErhI	CCWWGG	2 cut(s)	245, 251
FaeI	CATG	2 cut(s)	167, 255
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	2 cut(s)	163, 251
FauNDI	CATATG	1 cut(s)	393
FblI	GTMKAC	2 cut(s)	175, 363
Fnu4HI	GCNGC	2 cut(s)	336, 339
FokI	GGATG	1 cut(s)	219
Fsp4HI	GCNGC	2 cut(s)	336, 339
GluI	GCNGC	2 cut(s)	336, 339
HaeIII	GGCC	1 cut(s)	250
Hin1II	CATG	2 cut(s)	167, 255
HincII	GTYRAC	1 cut(s)	176
HindII	GTYRAC	1 cut(s)	176
HinfI	GANTC	4 cut(s)	108, 368, 422, 452
HphI	GGTGA	1 cut(s)	234
Hpy166II	GTNNAC	2 cut(s)	176, 364
Hpy188I	TCNGA	2 cut(s)	329, 373
Hpy188III	TCNNGA	1 cut(s)	57
Hpy8I	GTNNAC	2 cut(s)	176, 364
HpyAV	CCTTC	4 cut(s)	54, 150, 246, 283
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4V	TGCA	2 cut(s)	286, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	1 cut(s)	110
Hsp92II	CATG	2 cut(s)	167, 255
Kzo9I	GATC	5 cut(s)	115, 202, 229, 320, 517
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	8 cut(s)	42, 97, 114, 132, 248, 318, 331, 362
Lsp1109I	GCAGC	2 cut(s)	325, 347
LweI	GCATC	1 cut(s)	266
MaeIII	GTNAC	2 cut(s)	18, 157
MalI	GATC	5 cut(s)	117, 204, 231, 322, 519
MboI	GATC	5 cut(s)	115, 202, 229, 320, 517
MboII	GAAGA	4 cut(s)	117, 135, 231, 320
MflI	RGATCY	2 cut(s)	115, 320
MhlI	GDGCHC	1 cut(s)	535
MluCI	AATT	5 cut(s)	52, 223, 281, 381, 479
MlyI	GAGTC	3 cut(s)	102, 362, 431
MmeI	TCCRAC	2 cut(s)	63, 495
MnlI	CCTC	2 cut(s)	57, 537
MseI	TTAA	1 cut(s)	482
MslI	CAYNNNNRTG	1 cut(s)	528
MspA1I	CMGCKG	1 cut(s)	338
MwoI	GCNNNNNNNGC	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	251
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	5 cut(s)	115, 202, 229, 320, 517
NlaIII	CATG	2 cut(s)	167, 255
NlaIV	GGNNCC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	337, 340
PleI	GAGTC	3 cut(s)	102, 362, 430
PpsI	GAGTC	3 cut(s)	102, 362, 430
PspN4I	GGNNCC	1 cut(s)	117
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	2 cut(s)	115, 320
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	528
SalI	GTCGAC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	482
SatI	GCNGC	2 cut(s)	336, 339
Sau3AI	GATC	5 cut(s)	115, 202, 229, 320, 517
SchI	GAGTC	3 cut(s)	102, 362, 431
SduI	GDGCHC	1 cut(s)	535
SetI	ASST	5 cut(s)	20, 33, 340, 417, 548
SfaNI	GCATC	1 cut(s)	266
SfcI	CTRYAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	528
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
Sse9I	AATT	5 cut(s)	52, 223, 281, 381, 479
StyI	CCWWGG	2 cut(s)	245, 251
TaaI	ACNGT	1 cut(s)	46
TaqI	TCGA	1 cut(s)	175
TaqII	GACCGA	1 cut(s)	161
TasI	AATT	5 cut(s)	52, 223, 281, 381, 479
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	1 cut(s)	482
Tru9I	TTAA	1 cut(s)	482
TseI	GCWGC	2 cut(s)	335, 338
TspDTI	ATGAA	2 cut(s)	135, 492
XmiI	GTMKAC	2 cut(s)	175, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.