Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005556

Physical Location & Seq

Genomic Coordinates Reverse (-)

37323246 .. 37326152

Gene Structure 2907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G016300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGTGTCAAGAAATTTTTCAAGTGTGCAAGATGCTTTGTACAATATTACTGGTAGGTTACGAGATAACCTTTTCTCCAACACAGTAAATAATTCTGGAAGGAGGAATAGTTCAGCCGTGCTAACAGATACCAATCCTTATGGAAGACTCAGGGATCCTGCTCCTACTGGATTTCAGCCTTCTTCATCAGTTGGTGTTACTCATGGTCTCGGTCGACATACTACTCTAACTCAAAGTATGGATCATCTTGGACTTTCCCATAATTTAGATCATCCTTCTTCACCAAGGCCATGGGCATCACAGGCTTTATCAGTTTTGAAATTGCAGAAGGGCAATCAAATGCCTGAAGATTACCCCAGATCTTTCAGAGAAGCAGCTGCAGTTTTCCAGTATGCTCAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0016604 GO:0016607 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0070013 GO:0090567 GO:0090700 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

134

Amino Acids

14.77

Weight (kDa)

9.97

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342681 RchiOBHm_Chr4g0385031
rosa_laevigata	RLG00000008562 RLG00000014249 RLG00000030660
rosa_multiflora	Rmu_sc0000230.1_g000007 Rmu_sc0003052.1_g000011 Rmu_sc0006159.1_g000013 Rmu_sc0008336.1_g000014 Rmu_sc0010676.1_g000001 Rmu_sc0018406.1_g000002
rosa_roxburghii	Rroxscaffold_2G00116070 Rroxscaffold_7G00190900
rosa_rugosa	Rorug02G0507600
rosa_samantha	Rh2DG203900 Rh3DG272000 Rh4AG220600 Rh4CG002500 Rh4CG169000 Rh5AG255100 Rh5BG250800 Rh6BG140300 Rh6DG123700 Rh7AG342200 Rh7CG359800 Rh7CG474900
rosa_wichuraiana	Rw2G004640 Rw4G016300 Rw7G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	214
AclWI	GGATC	3 cut(s)	149, 162, 249
AcsI	RAATTY	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	1 cut(s)	41
AgsI	TTSAA	2 cut(s)	21, 319
AloI	GAACNNNNNNTCC	2 cut(s)	94, 126
AluBI	AGCT	1 cut(s)	377
AluI	AGCT	1 cut(s)	377
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	3 cut(s)	149, 162, 249
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	374, 377
ApoI	RAATTY	1 cut(s)	13
Asp700I	GAANNNNTTC	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	273
BamHI	GGATCC	1 cut(s)	154
BbsI	GAAGAC	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	364, 386
BceAI	ACGGC	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	378
BglII	AGATCT	1 cut(s)	359
BisI	GCNGC	2 cut(s)	375, 378
BlsI	GCNGC	2 cut(s)	376, 379
BmiI	GGNNCC	1 cut(s)	156
BmsI	GCATC	2 cut(s)	22, 305
BpiI	GAAGAC	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	381
BsaBI	GATNNNNATC	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	284, 290
BsaXI	ACNNNNNCTCC	4 cut(s)	59, 89, 94, 124
Bse1I	ACTGG	3 cut(s)	55, 172, 388
Bse8I	GATNNNNATC	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	284, 290
BseGI	GGATG	1 cut(s)	271
BseJI	GATNNNNATC	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	163
BseNI	ACTGG	3 cut(s)	55, 172, 388
BseXI	GCAGC	2 cut(s)	364, 386
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	1 cut(s)	289
BsiEI	CGRYCG	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	289
Bso31I	GGTCTC	1 cut(s)	212
Bsp1407I	TGTACA	1 cut(s)	39
Bsp143I	GATC	4 cut(s)	154, 241, 268, 359
Bsp19I	CCATGG	1 cut(s)	290
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	156
BspMAI	CTGCAG	1 cut(s)	382
BspPI	GGATC	3 cut(s)	149, 162, 249
BspTNI	GGTCTC	1 cut(s)	212
BsrGI	TGTACA	1 cut(s)	39
BsrI	ACTGG	3 cut(s)	55, 172, 388
BssECI	CCNNGG	2 cut(s)	284, 290
BssMI	GATC	4 cut(s)	154, 241, 268, 359
BssT1I	CCWWGG	2 cut(s)	284, 290
Bst4CI	ACNGT	1 cut(s)	85
BstAUI	TGTACA	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	149
BstDSI	CCRYGG	1 cut(s)	290
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	4 cut(s)	157, 244, 271, 362
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	4 cut(s)	154, 241, 268, 359
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	2 cut(s)	364, 386
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	2 cut(s)	154, 359
BstXI	CCANNNNNNTGG	1 cut(s)	291
BstYI	RGATCY	2 cut(s)	154, 359
BsuRI	GGCC	1 cut(s)	289
BtgI	CCRYGG	1 cut(s)	290
BtsCI	GGATG	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	2 cut(s)	203, 291
CviJI	RGCY	5 cut(s)	116, 178, 289, 305, 377
CviKI_1	RGCY	5 cut(s)	116, 178, 289, 305, 377
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	4 cut(s)	156, 243, 270, 361
DpnII	GATC	4 cut(s)	154, 241, 268, 359
Eco130I	CCWWGG	2 cut(s)	284, 290
Eco31I	GGTCTC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	366
EcoT14I	CCWWGG	2 cut(s)	284, 290
ErhI	CCWWGG	2 cut(s)	284, 290
FaeI	CATG	2 cut(s)	206, 294
FaiI	YATR	7 cut(s)	141, 204, 219, 239, 261, 292, 393
FatI	CATG	2 cut(s)	202, 290
FblI	GTMKAC	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	375, 378
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	2 cut(s)	375, 378
GluI	GCNGC	2 cut(s)	375, 378
HaeIII	GGCC	1 cut(s)	289
Hin1II	CATG	2 cut(s)	206, 294
HincII	GTYRAC	1 cut(s)	215
HindII	GTYRAC	1 cut(s)	215
HinfI	GANTC	1 cut(s)	147
HphI	GGTGA	1 cut(s)	273
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	1 cut(s)	368
Hpy188III	TCNNGA	2 cut(s)	9, 96
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	4 cut(s)	93, 189, 285, 322
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	3 cut(s)	28, 325, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	1 cut(s)	149
Hsp92II	CATG	2 cut(s)	206, 294
Kzo9I	GATC	4 cut(s)	154, 241, 268, 359
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	9 cut(s)	36, 81, 136, 153, 171, 287, 357, 370, 401
Lsp1109I	GCAGC	2 cut(s)	364, 386
LweI	GCATC	2 cut(s)	22, 305
MaeIII	GTNAC	2 cut(s)	57, 196
MalI	GATC	4 cut(s)	156, 243, 270, 361
MboI	GATC	4 cut(s)	154, 241, 268, 359
MboII	GAAGA	4 cut(s)	156, 174, 270, 359
MflI	RGATCY	2 cut(s)	154, 359
MluCI	AATT	4 cut(s)	13, 91, 262, 320
MlyI	GAGTC	1 cut(s)	141
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	1 cut(s)	96
MroXI	GAANNNNTTC	1 cut(s)	16
MspA1I	CMGCKG	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	302
NcoI	CCATGG	1 cut(s)	290
NdeII	GATC	4 cut(s)	154, 241, 268, 359
NlaIII	CATG	2 cut(s)	206, 294
NlaIV	GGNNCC	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	376, 379
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	156
PstI	CTGCAG	1 cut(s)	382
PsuI	RGATCY	2 cut(s)	154, 359
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SalI	GTCGAC	1 cut(s)	213
SatI	GCNGC	2 cut(s)	375, 378
Sau3AI	GATC	4 cut(s)	154, 241, 268, 359
SchI	GAGTC	1 cut(s)	141
SetI	ASST	3 cut(s)	59, 72, 379
SfaNI	GCATC	2 cut(s)	22, 305
SfcI	CTRYAG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
Sse9I	AATT	4 cut(s)	13, 91, 262, 320
SspI	AATATT	1 cut(s)	46
StyI	CCWWGG	2 cut(s)	284, 290
TaaI	ACNGT	1 cut(s)	85
TaqI	TCGA	1 cut(s)	214
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	4 cut(s)	13, 91, 262, 320
TatI	WGTACW	1 cut(s)	39
TseI	GCWGC	2 cut(s)	374, 377
TspDTI	ATGAA	1 cut(s)	174
XapI	RAATTY	1 cut(s)	13
XmiI	GTMKAC	1 cut(s)	214
XmnI	GAANNNNTTC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.