Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0008185

Physical Location & Seq

Genomic Coordinates Forward (+)

27794612 .. 27795303

Gene Structure 692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023749

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCGACCGCTGCCGGTCTCCATTCTAAGTGGAGCAACCTACTCCACCCCCCACAATCCAATCTCATCCCTCCAACGCTGGCTTTCCCCGGCGACCACCCAACAAAACCTAGGGCGAGCTTCATGCGCTTTCCTCCAAGAGGTGGTGGCAGCTTGCTCTTAGGAGCGATTAGAGTCTCTGGCAATCGACCGTGTGGAGATCCTTCATCCATTGCTTCTCTTGAGTCGGGTCTCCGATCTACTTCTTATGGGTGGTCGGTAGAAGGCTTTTCTCTACCTCACCCTGCATTGGTCAAATTCTGGAATCTGAGGAAGTTGGTGAAATCGGTGATTCATCACCGAAGCAAGCCTATAGAGGAAGATGAGCTTGTGGAGAGAAAAGACTCAGGATCCAGGGTGGAGGCAGATGCGCCTGCATCTCGTATGTGCGACGACGATGGTGGCCACGACGGAGATTGGTGCAAGCGTGGGTGTACCCAGTCTGAGTTGGGTGCCGAGATCATTGTTGTGGGCCAACTCGAATTGGGGGCCCAATTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

19.39

Weight (kDa)

7.04

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008185)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000016386 RLG00000019388 RLG00000023749 RLG00000025324 RLG00000029183 RLG00000029321
rosa_multiflora	Rmu_sc0000674.1_g000016 Rmu_sc0005706.1_g000007 Rmu_ssc0000421.1_g000059
rosa_roxburghii	Rroxscaffold_158G00443760 Rroxscaffold_4G00310830
rosa_rugosa	Rorug01G0064200 Rorug04G0428800
rosa_samantha	Rh1CG371300 Rh1DG388700 Rh2AG237800 Rh2DG245300 Rh4CG156000 Rh4DG117200 Rh6AG473200 Rh6BG089600 Rh6BG320100 Rh6DG336000 Rh7DG021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	491
AccB7I	CCANNNNNTGG	1 cut(s)	143
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	3 cut(s)	194, 384, 397
AcoI	YGGCCR	1 cut(s)	442
AcsI	RAATTY	1 cut(s)	296
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	3 cut(s)	140, 143, 289
AjnI	CCWGG	1 cut(s)	392
AluBI	AGCT	3 cut(s)	120, 153, 367
AluI	AGCT	3 cut(s)	120, 153, 367
Alw26I	GTCTC	3 cut(s)	23, 181, 236
AlwI	GGATC	3 cut(s)	194, 384, 397
AoxI	GGCC	3 cut(s)	442, 511, 528
ApaI	GGGCCC	1 cut(s)	532
ApeKI	GCWGC	2 cut(s)	11, 150
ApoI	RAATTY	1 cut(s)	296
AspA2I	CCTAGG	1 cut(s)	110
AspLEI	GCGC	2 cut(s)	129, 412
AspS9I	GGNCC	3 cut(s)	511, 528, 529
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	4 cut(s)	272, 329, 331, 340
AvrII	CCTAGG	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	532
BalI	TGGCCA	1 cut(s)	444
BamHI	GGATCC	1 cut(s)	389
BanI	GGYRCC	1 cut(s)	491
BanII	GRGCYC	1 cut(s)	532
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	1 cut(s)	431
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	1 cut(s)	394
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	3 cut(s)	23, 181, 236
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	351
BisI	GCNGC	2 cut(s)	12, 151
BlnI	CCTAGG	1 cut(s)	110
BlsI	GCNGC	2 cut(s)	13, 152
Bme1390I	CCNGG	2 cut(s)	90, 394
BmgT120I	GGNCC	3 cut(s)	511, 528, 529
BmiI	GGNNCC	4 cut(s)	391, 493, 529, 530
BmrFI	CCNGG	2 cut(s)	90, 394
BmrI	ACTGGG	1 cut(s)	472
BmsI	GCATC	2 cut(s)	397, 425
BmuI	ACTGGG	1 cut(s)	472
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	90
BsaI	GGTCTC	2 cut(s)	23, 236
BsaJI	CCNNGG	3 cut(s)	88, 110, 393
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 143, 289
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	478
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	394
BseDI	CCNNGG	3 cut(s)	88, 110, 393
BseGI	GGATG	2 cut(s)	66, 206
BseLI	CCNNNNNNNGG	3 cut(s)	140, 143, 289
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	3 cut(s)	299, 399, 474
BseNI	ACTGG	1 cut(s)	478
BseSI	GKGCMC	1 cut(s)	532
BseXI	GCAGC	1 cut(s)	162
Bsh1285I	CGRYCG	2 cut(s)	9, 191
BshFI	GGCC	3 cut(s)	444, 513, 530
BshNI	GGYRCC	1 cut(s)	491
BsiEI	CGRYCG	2 cut(s)	9, 191
BsiSI	CCGG	2 cut(s)	15, 90
BslI	CCNNNNNNNGG	3 cut(s)	140, 143, 289
BsmAI	GTCTC	3 cut(s)	23, 181, 236
BsnI	GGCC	3 cut(s)	444, 513, 530
Bso31I	GGTCTC	2 cut(s)	23, 236
Bsp120I	GGGCCC	1 cut(s)	528
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	4 cut(s)	199, 236, 389, 498
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	3 cut(s)	444, 513, 530
BspCNI	CTCAG	3 cut(s)	300, 398, 475
BspLI	GGNNCC	4 cut(s)	391, 493, 529, 530
BspPI	GGATC	3 cut(s)	194, 384, 397
BspT107I	GGYRCC	1 cut(s)	491
BspTNI	GGTCTC	2 cut(s)	23, 236
BsrDI	GCAATG	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	478
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	3 cut(s)	88, 110, 393
BssMI	GATC	4 cut(s)	199, 236, 389, 498
BssT1I	CCWWGG	1 cut(s)	110
Bst2UI	CCWGG	1 cut(s)	394
Bst4CI	ACNGT	1 cut(s)	192
BstC8I	GCNNGC	6 cut(s)	81, 118, 155, 347, 414, 464
BstDEI	CTNAG	5 cut(s)	27, 160, 308, 385, 483
BstENI	CCTNNNNNAGG	1 cut(s)	138
BstF5I	GGATG	2 cut(s)	66, 206
BstHHI	GCGC	2 cut(s)	129, 412
BstKTI	GATC	4 cut(s)	202, 239, 392, 501
BstMAI	GTCTC	3 cut(s)	23, 181, 236
BstMBI	GATC	4 cut(s)	199, 236, 389, 498
BstMCI	CGRYCG	2 cut(s)	9, 191
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 126
BstNI	CCWGG	1 cut(s)	394
BstSCI	CCNGG	2 cut(s)	88, 392
BstSFI	CTRYAG	1 cut(s)	351
BstSLI	GKGCMC	1 cut(s)	532
BstV1I	GCAGC	1 cut(s)	162
BstX2I	RGATCY	2 cut(s)	199, 389
BstYI	RGATCY	2 cut(s)	199, 389
BsuRI	GGCC	3 cut(s)	444, 513, 530
BtsCI	GGATG	2 cut(s)	66, 206
Cac8I	GCNNGC	6 cut(s)	81, 118, 155, 347, 414, 464
CfoI	GCGC	2 cut(s)	129, 412
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	3 cut(s)	511, 528, 529
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	9 cut(s)	83, 120, 153, 267, 349, 367, 444, 513, 530
CviKI_1	RGCY	9 cut(s)	83, 120, 153, 267, 349, 367, 444, 513, 530
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	5 cut(s)	27, 160, 308, 385, 483
DpnI	GATC	4 cut(s)	201, 238, 391, 500
DpnII	GATC	4 cut(s)	199, 236, 389, 498
EaeI	YGGCCR	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	110
Eco24I	GRGCYC	1 cut(s)	532
Eco31I	GGTCTC	2 cut(s)	23, 236
EcoNI	CCTNNNNNAGG	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	528
EcoRII	CCWGG	1 cut(s)	392
EcoT14I	CCWWGG	1 cut(s)	110
EcoT38I	GRGCYC	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	110
FaeI	CATG	1 cut(s)	127
FaiI	YATR	5 cut(s)	125, 249, 353, 425, 538
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FatI	CATG	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	12, 151
FokI	GGATG	2 cut(s)	53, 193
FriOI	GRGCYC	1 cut(s)	532
Fsp4HI	GCNGC	2 cut(s)	12, 151
FspBI	CTAG	1 cut(s)	111
GlaI	GCGC	2 cut(s)	128, 411
GluI	GCNGC	2 cut(s)	12, 151
HaeIII	GGCC	3 cut(s)	444, 513, 530
HapII	CCGG	2 cut(s)	15, 90
HhaI	GCGC	2 cut(s)	129, 412
Hin1II	CATG	1 cut(s)	127
Hin6I	GCGC	2 cut(s)	127, 410
HinP1I	GCGC	2 cut(s)	127, 410
HinfI	GANTC	5 cut(s)	174, 224, 304, 331, 383
HpaII	CCGG	2 cut(s)	15, 90
HphI	GGTGA	4 cut(s)	272, 329, 331, 340
Hpy166II	GTNNAC	1 cut(s)	474
Hpy188I	TCNGA	3 cut(s)	236, 309, 484
Hpy188III	TCNNGA	3 cut(s)	221, 301, 387
Hpy8I	GTNNAC	1 cut(s)	474
Hpy99I	CGWCG	3 cut(s)	434, 437, 452
HpyAV	CCTTC	2 cut(s)	213, 257
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4V	TGCA	3 cut(s)	287, 416, 462
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 126
HpyF3I	CTNAG	5 cut(s)	27, 160, 308, 385, 483
Hsp92II	CATG	1 cut(s)	127
HspAI	GCGC	2 cut(s)	127, 410
Kzo9I	GATC	4 cut(s)	199, 236, 389, 498
LmnI	GCTCC	2 cut(s)	33, 164
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	2 cut(s)	397, 425
MaeI	CTAG	1 cut(s)	111
MalI	GATC	4 cut(s)	201, 238, 391, 500
MboI	GATC	4 cut(s)	199, 236, 389, 498
MboII	GAAGA	1 cut(s)	371
MflI	RGATCY	2 cut(s)	199, 389
MhlI	GDGCHC	1 cut(s)	532
MlsI	TGGCCA	1 cut(s)	444
MluCI	AATT	3 cut(s)	296, 521, 533
MluNI	TGGCCA	1 cut(s)	444
MlyI	GAGTC	3 cut(s)	183, 233, 377
MmeI	TCCRAC	1 cut(s)	98
MnlI	CCTC	7 cut(s)	81, 134, 144, 288, 303, 349, 394
Mox20I	TGGCCA	1 cut(s)	444
MscI	TGGCCA	1 cut(s)	444
MslI	CAYNNNNRTG	1 cut(s)	506
Msp20I	TGGCCA	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	2 cut(s)	15, 90
MspR9I	CCNGG	2 cut(s)	90, 394
MvaI	CCWGG	1 cut(s)	394
MwoI	GCNNNNNNNGC	2 cut(s)	11, 126
NciI	CCSGG	1 cut(s)	90
NdeII	GATC	4 cut(s)	199, 236, 389, 498
NlaIII	CATG	1 cut(s)	127
NlaIV	GGNNCC	4 cut(s)	391, 493, 529, 530
NmeAIII	GCCGAG	1 cut(s)	520
PfeI	GAWTC	2 cut(s)	304, 331
PflMI	CCANNNNNTGG	1 cut(s)	143
PkrI	GCNGC	2 cut(s)	13, 152
PleI	GAGTC	3 cut(s)	182, 232, 377
PpsI	GAGTC	3 cut(s)	182, 232, 377
Psp6I	CCWGG	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	392
PspN4I	GGNNCC	4 cut(s)	391, 493, 529, 530
PspOMI	GGGCCC	1 cut(s)	528
PspPI	GGNCC	3 cut(s)	511, 528, 529
PsuI	RGATCY	2 cut(s)	199, 389
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
RseI	CAYNNNNRTG	1 cut(s)	506
SatI	GCNGC	2 cut(s)	12, 151
Sau3AI	GATC	4 cut(s)	199, 236, 389, 498
Sau96I	GGNCC	3 cut(s)	511, 528, 529
SchI	GAGTC	3 cut(s)	183, 233, 377
ScrFI	CCNGG	2 cut(s)	90, 394
SduI	GDGCHC	1 cut(s)	532
SetI	ASST	7 cut(s)	42, 112, 122, 145, 155, 280, 369
SfaNI	GCATC	2 cut(s)	397, 425
SfcI	CTRYAG	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	3 cut(s)	296, 521, 533
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	2 cut(s)	88, 392
StyI	CCWWGG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	192
TaqI	TCGA	2 cut(s)	187, 519
TasI	AATT	3 cut(s)	296, 521, 533
TfiI	GAWTC	2 cut(s)	304, 331
TseI	GCWGC	2 cut(s)	11, 150
TspDTI	ATGAA	3 cut(s)	112, 195, 323
TspGWI	ACGGA	1 cut(s)	465
Van91I	CCANNNNNTGG	1 cut(s)	143
XagI	CCTNNNNNAGG	1 cut(s)	138
XapI	RAATTY	1 cut(s)	296
XmaJI	CCTAGG	1 cut(s)	110
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.