Rh6BG320100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008185
Physical Location & Seq
Reverse (-)
55119081 .. 55120462
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG320100.1

Sequence Viewer

Length: 999 bp
ATGTTTAATGCCGCTCCCAAAACCTACCGTCTGTGCTCGGTGATCCAAACATGGCGACCGCTGCTGGTCTCCATCCTAAGTGGAGAAACCCGCTCCACCTCCCACGATCCAATCTCTACCTTCCAAAGCTGGTTCTTCCCGGCGACCACCCAACAACACGAGGGTTCTGTAATTTTCCAGGTTTCTGATCCTTGCCTGATTGACTTCGGTCCAGACCGCGGTAGACCTCTAGAGGCGAGCCTCGTGTGCTCTGTTTCGAGTCTCCGATCTGTCAAACTTTGGGACCTGAGGAGGGTGGTGAAATCGGTGTTTCTTGGCCGATGTAAGCATATCGAGGAGGATGAGTTTGCTGAGATCGGACGGGCTCGACCGCCTCGGGGTCGTCTCAAATTCAGAATTCTTGATTCTCCGCTTTGGATGCATAGGCTGATATGGGGAGACATGTCTCAGCACTCGGGCTGGAGACGAGATCGACTGCATCTCATTTGTGCGGCGGCGATTATGGCTGCGACGGAGATGGAGGCCGCAAAAGTGGGTGCTCCCAATCGGGGTGGGTTGCCTTCGAGAGGACGTGATCGTTTTTTCCATCGTACTGGGACTGTGATCGAAGGCTTCCGTTCCCTGGGCGCGGTGGCAGCCGACACTGATCTCCGAGCAGAGCATAAGATGGCGAGGTCGAGGGTGGCAAAATCATTTAGGTGGCCCATTTTATGTGGGTGGCCTAAATCCAACTGCTCGTTTTGGACCCAGGTGTGGCCCGATTTGAAGAGTTTGGGTCCTTTGGGTTTTCGTATCTGGCACCCAGGCGAACTCTGGTACTTCACTAATGGGTTCAGGTTCTTCATGGTTTCGTCTTTGGAATCTAGGAGGATCGACTCAGAACATCACATTACAGTCTTTCCTTTCCTCCTGGCCCAACTGTTTGGGGCAAGGAAAAATTTAAAGTTTTTGTTTTTTCTTTCTAAATTATGCCTAATTCCTATGTTTAGTTTTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

38.09

Weight (kDa)

10.18

Isoelectric Point (pI)

49.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 798
AccBSI CCGCTC 2 cut(s) 14, 93
AccI GTMKAC 1 cut(s) 223
AccII CGCG 2 cut(s) 219, 629
AclWI GGATC 4 cut(s) 37, 101, 182, 878
AcoI YGGCCR 1 cut(s) 316
AcsI RAATTY 3 cut(s) 389, 396, 937
AfaI GTAC 2 cut(s) 592, 818
AfiI CCNNNNNNNGG 8 cut(s) 218, 292, 377, 548, 566, 622, 628, 753
AflIII ACRYGT 1 cut(s) 441
AgsI TTSAA 1 cut(s) 766
AjiI CACGTC 1 cut(s) 572
AjnI CCWGG 5 cut(s) 177, 621, 747, 802, 909
AluBI AGCT 1 cut(s) 129
AluI AGCT 1 cut(s) 129
Alw21I GWGCWC 3 cut(s) 38, 251, 541
Alw26I GTCTC 6 cut(s) 73, 266, 389, 432, 450, 457
AlwI GGATC 4 cut(s) 37, 101, 182, 878
Ama87I CYCGRG 2 cut(s) 375, 454
AoxI GGCC 6 cut(s) 316, 522, 701, 719, 755, 912
ApeKI GCWGC 3 cut(s) 61, 506, 635
ApoI RAATTY 3 cut(s) 389, 396, 937
AspLEI GCGC 1 cut(s) 629
AspS9I GGNCC 7 cut(s) 209, 283, 702, 744, 756, 776, 913
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 52, 310
AvaI CYCGRG 2 cut(s) 375, 454
AvaII GGWCC 4 cut(s) 209, 283, 744, 776
AxyI CCTNAGG 1 cut(s) 287
BanI GGYRCC 1 cut(s) 798
BanII GRGCYC 1 cut(s) 367
BauI CACGAG 2 cut(s) 158, 242
Bbv12I GWGCWC 3 cut(s) 38, 251, 541
BbvI GCAGC 3 cut(s) 48, 493, 647
BccI CCATC 4 cut(s) 80, 511, 594, 661
BciT130I CCWGG 5 cut(s) 179, 623, 749, 804, 911
BcnI CCSGG 1 cut(s) 140
BcoDI GTCTC 6 cut(s) 73, 266, 389, 432, 450, 457
BfaI CTAG 2 cut(s) 230, 864
BisI GCNGC 7 cut(s) 12, 62, 492, 495, 507, 525, 636
BlsI GCNGC 7 cut(s) 13, 63, 493, 496, 508, 526, 637
Bme1390I CCNGG 6 cut(s) 140, 179, 623, 749, 804, 911
Bme18I GGWCC 4 cut(s) 209, 283, 744, 776
BmeT110I CYCGRG 2 cut(s) 375, 454
BmgBI CACGTC 1 cut(s) 572
BmgT120I GGNCC 7 cut(s) 209, 283, 702, 744, 756, 776, 913
BmiI GGNNCC 4 cut(s) 284, 746, 777, 800
BmrFI CCNGG 6 cut(s) 140, 179, 623, 749, 804, 911
BmrI ACTGGG 1 cut(s) 603
BmsI GCATC 2 cut(s) 408, 487
BmuI ACTGGG 1 cut(s) 603
BoxI GACNNNNGTC 1 cut(s) 207
BpmI CTGGAG 1 cut(s) 481
BpuMI CCSGG 1 cut(s) 140
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 6 cut(s) 217, 374, 621, 622, 747, 802
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 8 cut(s) 218, 292, 377, 548, 566, 622, 628, 753
Bse1I ACTGG 1 cut(s) 598
Bse21I CCTNAGG 1 cut(s) 287
BseBI CCWGG 5 cut(s) 179, 623, 749, 804, 911
BseDI CCNNGG 6 cut(s) 217, 374, 621, 622, 747, 802
BseGI GGATG 3 cut(s) 72, 346, 423
BseLI CCNNNNNNNGG 8 cut(s) 218, 292, 377, 548, 566, 622, 628, 753
BseMII CTCAG 4 cut(s) 278, 342, 461, 891
BseNI ACTGG 1 cut(s) 598
BseRI GAGGAG 2 cut(s) 304, 350
BseXI GCAGC 3 cut(s) 48, 493, 647
Bsh1236I CGCG 2 cut(s) 219, 629
Bsh1285I CGRYCG 2 cut(s) 59, 371
BshFI GGCC 6 cut(s) 318, 524, 703, 721, 757, 914
BshNI GGYRCC 1 cut(s) 798
BsiEI CGRYCG 2 cut(s) 59, 371
BsiHKAI GWGCWC 3 cut(s) 38, 251, 541
BsiHKCI CYCGRG 2 cut(s) 375, 454
BsiSI CCGG 1 cut(s) 140
BslFI GGGAC 2 cut(s) 296, 610
BslI CCNNNNNNNGG 8 cut(s) 218, 292, 377, 548, 566, 622, 628, 753
BsmAI GTCTC 6 cut(s) 73, 266, 389, 432, 450, 457
BsmBI CGTCTC 2 cut(s) 389, 457
BsmFI GGGAC 2 cut(s) 296, 610
BsnI GGCC 6 cut(s) 318, 524, 703, 721, 757, 914
Bso31I GGTCTC 1 cut(s) 73
BsoBI CYCGRG 2 cut(s) 375, 454
Bsp1286I GDGCHC 4 cut(s) 38, 251, 367, 541
BspANI GGCC 6 cut(s) 318, 524, 703, 721, 757, 914
BspCNI CTCAG 4 cut(s) 279, 343, 460, 890
BspFNI CGCG 2 cut(s) 219, 629
BspLI GGNNCC 4 cut(s) 284, 746, 777, 800
BspPI GGATC 4 cut(s) 37, 101, 182, 878
BspT107I GGYRCC 1 cut(s) 798
BspTNI GGTCTC 1 cut(s) 73
BsrBI CCGCTC 2 cut(s) 14, 93
BsrI ACTGG 1 cut(s) 598
BssECI CCNNGG 6 cut(s) 217, 374, 621, 622, 747, 802
BssSI CACGAG 2 cut(s) 158, 242
Bst2BI CACGAG 2 cut(s) 158, 242
Bst2UI CCWGG 5 cut(s) 179, 623, 749, 804, 911
Bst4CI ACNGT 4 cut(s) 29, 601, 895, 921
Bst6I CTCTTC 1 cut(s) 761
BstC8I GCNNGC 1 cut(s) 238
BstDEI CTNAG 5 cut(s) 77, 287, 351, 447, 877
BstDSI CCRYGG 1 cut(s) 217
BstENI CCTNNNNNAGG 1 cut(s) 564
BstF5I GGATG 3 cut(s) 72, 346, 423
BstFNI CGCG 2 cut(s) 219, 629
BstHHI GCGC 1 cut(s) 629
BstMAI GTCTC 6 cut(s) 73, 266, 389, 432, 450, 457
BstMCI CGRYCG 2 cut(s) 59, 371
BstMWI GCNNNNNNNGC 5 cut(s) 61, 246, 418, 503, 635
BstNI CCWGG 5 cut(s) 179, 623, 749, 804, 911
BstNSI RCATGY 1 cut(s) 445
BstPAI GACNNNNGTC 1 cut(s) 207
BstSCI CCNGG 6 cut(s) 138, 177, 621, 747, 802, 909
BstUI CGCG 2 cut(s) 219, 629
BstV1I GCAGC 3 cut(s) 48, 493, 647
BstXI CCANNNNNNTGG 2 cut(s) 593, 923
Bsu36I CCTNAGG 1 cut(s) 287
BsuRI GGCC 6 cut(s) 318, 524, 703, 721, 757, 914
BtgI CCRYGG 1 cut(s) 217
BtrI CACGTC 1 cut(s) 572
BtsCI GGATG 3 cut(s) 72, 346, 423
BtsIMutI CAGTG 1 cut(s) 642
Cac8I GCNNGC 1 cut(s) 238
CfoI GCGC 1 cut(s) 629
Cfr13I GGNCC 7 cut(s) 209, 283, 702, 744, 756, 776, 913
Cfr42I CCGCGG 1 cut(s) 220
Csp6I GTAC 2 cut(s) 591, 817
CspCI CAANNNNNGTGG 2 cut(s) 532, 567
CviAII CATG 3 cut(s) 51, 442, 844
CviQI GTAC 2 cut(s) 591, 817
DdeI CTNAG 5 cut(s) 77, 287, 351, 447, 877
DraI TTTAAA 1 cut(s) 942
EaeI YGGCCR 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 761
EarI CTCTTC 1 cut(s) 761
Eco24I GRGCYC 1 cut(s) 367
Eco31I GGTCTC 1 cut(s) 73
Eco47I GGWCC 4 cut(s) 209, 283, 744, 776
Eco81I CCTNAGG 1 cut(s) 287
Eco88I CYCGRG 2 cut(s) 375, 454
EcoNI CCTNNNNNAGG 1 cut(s) 564
EcoO109I RGGNCCY 2 cut(s) 283, 776
EcoRI GAATTC 1 cut(s) 396
EcoRII CCWGG 5 cut(s) 177, 621, 747, 802, 909
EcoT22I ATGCAT 1 cut(s) 423
EcoT38I GRGCYC 1 cut(s) 367
Esp3I CGTCTC 2 cut(s) 389, 457
FaeI CATG 3 cut(s) 54, 445, 847
FaqI GGGAC 2 cut(s) 296, 610
FatI CATG 3 cut(s) 50, 441, 843
FauI CCCGC 1 cut(s) 98
FblI GTMKAC 1 cut(s) 223
Fnu4HI GCNGC 7 cut(s) 12, 62, 492, 495, 507, 525, 636
FokI GGATG 3 cut(s) 59, 353, 430
FriOI GRGCYC 1 cut(s) 367
Fsp4HI GCNGC 7 cut(s) 12, 62, 492, 495, 507, 525, 636
FspBI CTAG 2 cut(s) 230, 864
GlaI GCGC 1 cut(s) 628
GluI GCNGC 7 cut(s) 12, 62, 492, 495, 507, 525, 636
GsuI CTGGAG 1 cut(s) 481
HaeIII GGCC 6 cut(s) 318, 524, 703, 721, 757, 914
HapII CCGG 1 cut(s) 140
HhaI GCGC 1 cut(s) 629
Hin1II CATG 3 cut(s) 54, 445, 847
Hin6I GCGC 1 cut(s) 627
HinP1I GCGC 1 cut(s) 627
HinfI GANTC 4 cut(s) 259, 404, 860, 875
HpaII CCGG 1 cut(s) 140
HphI GGTGA 2 cut(s) 52, 310
Hpy166II GTNNAC 1 cut(s) 224
Hpy188I TCNGA 6 cut(s) 187, 266, 359, 395, 653, 880
Hpy188III TCNNGA 4 cut(s) 212, 230, 401, 564
Hpy8I GTNNAC 1 cut(s) 224
Hpy99I CGWCG 1 cut(s) 514
HpyAV CCTTC 3 cut(s) 130, 570, 602
HpyCH4III ACNGT 4 cut(s) 29, 601, 895, 921
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 2 cut(s) 421, 478
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 246, 418, 503, 635
HpyF3I CTNAG 5 cut(s) 77, 287, 351, 447, 877
HpySE526I ACGT 1 cut(s) 571
Hsp92II CATG 3 cut(s) 54, 445, 847
HspAI GCGC 1 cut(s) 627
KspI CCGCGG 1 cut(s) 220
LmnI GCTCC 3 cut(s) 19, 98, 544
Lsp1109I GCAGC 3 cut(s) 48, 493, 647
LweI GCATC 2 cut(s) 408, 487
MaeI CTAG 2 cut(s) 230, 864
MaeII ACGT 1 cut(s) 571
MbiI CCGCTC 2 cut(s) 14, 93
MboII GAAGA 3 cut(s) 127, 778, 832
MhlI GDGCHC 4 cut(s) 38, 251, 367, 541
MluCI AATT 6 cut(s) 171, 389, 396, 937, 965, 975
MlyI GAGTC 2 cut(s) 268, 869
MmeI TCCRAC 1 cut(s) 753
Mph1103I ATGCAT 1 cut(s) 423
MseI TTAA 2 cut(s) 6, 941
MslI CAYNNNNRTG 1 cut(s) 697
MspA1I CMGCKG 2 cut(s) 61, 219
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 6 cut(s) 140, 179, 623, 749, 804, 911
MvaI CCWGG 5 cut(s) 179, 623, 749, 804, 911
MvnI CGCG 2 cut(s) 219, 629
MwoI GCNNNNNNNGC 5 cut(s) 61, 246, 418, 503, 635
NciI CCSGG 1 cut(s) 140
NlaIII CATG 3 cut(s) 54, 445, 847
NlaIV GGNNCC 4 cut(s) 284, 746, 777, 800
NsiI ATGCAT 1 cut(s) 423
NspI RCATGY 1 cut(s) 445
PasI CCCWGGG 1 cut(s) 622
PciI ACATGT 1 cut(s) 441
PfeI GAWTC 2 cut(s) 404, 860
PkrI GCNGC 7 cut(s) 13, 63, 493, 496, 508, 526, 637
PleI GAGTC 2 cut(s) 267, 869
PpsI GAGTC 2 cut(s) 267, 869
PpuMI RGGWCCY 2 cut(s) 283, 776
PscI ACATGT 1 cut(s) 441
PshAI GACNNNNGTC 1 cut(s) 207
Psp5II RGGWCCY 2 cut(s) 283, 776
Psp6I CCWGG 5 cut(s) 177, 621, 747, 802, 909
PspGI CCWGG 5 cut(s) 177, 621, 747, 802, 909
PspN4I GGNNCC 4 cut(s) 284, 746, 777, 800
PspPI GGNCC 7 cut(s) 209, 283, 702, 744, 756, 776, 913
PspPPI RGGWCCY 2 cut(s) 283, 776
RsaI GTAC 2 cut(s) 592, 818
RsaNI GTAC 2 cut(s) 591, 817
RseI CAYNNNNRTG 1 cut(s) 697
SacII CCGCGG 1 cut(s) 220
SaqAI TTAA 2 cut(s) 6, 941
SatI GCNGC 7 cut(s) 12, 62, 492, 495, 507, 525, 636
Sau96I GGNCC 7 cut(s) 209, 283, 702, 744, 756, 776, 913
SchI GAGTC 2 cut(s) 268, 869
ScrFI CCNGG 6 cut(s) 140, 179, 623, 749, 804, 911
SduI GDGCHC 4 cut(s) 38, 251, 367, 541
SfaNI GCATC 2 cut(s) 408, 487
Sfr303I CCGCGG 1 cut(s) 220
SgrBI CCGCGG 1 cut(s) 220
SinI GGWCC 4 cut(s) 209, 283, 744, 776
SmiMI CAYNNNNRTG 1 cut(s) 697
Sse9I AATT 6 cut(s) 171, 389, 396, 937, 965, 975
SspMI CTAG 2 cut(s) 230, 864
StyD4I CCNGG 6 cut(s) 138, 177, 621, 747, 802, 909
TaaI ACNGT 4 cut(s) 29, 601, 895, 921
TaiI ACGT 1 cut(s) 574
TaqI TCGA 8 cut(s) 257, 333, 367, 472, 563, 606, 677, 873
TaqII GACCGA 1 cut(s) 197
TasI AATT 6 cut(s) 171, 389, 396, 937, 965, 975
TauI GCSGC 4 cut(s) 14, 494, 497, 527
TfiI GAWTC 2 cut(s) 404, 860
Tru1I TTAA 2 cut(s) 6, 941
Tru9I TTAA 2 cut(s) 6, 941
TscAI CASTG 1 cut(s) 649
TseI GCWGC 3 cut(s) 61, 506, 635
TspDTI ATGAA 2 cut(s) 832, 984
TspGWI ACGGA 2 cut(s) 527, 605
TspRI CASTG 1 cut(s) 649
VpaK11BI GGWCC 4 cut(s) 209, 283, 744, 776
XagI CCTNNNNNAGG 1 cut(s) 564
XapI RAATTY 3 cut(s) 389, 396, 937
XbaI TCTAGA 1 cut(s) 229
XceI RCATGY 1 cut(s) 445
XcmI CCANNNNNNNNNTGG 1 cut(s) 810
XmiI GTMKAC 1 cut(s) 223
XspI CTAG 2 cut(s) 230, 864
Zsp2I ATGCAT 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.