Rh6DG336000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0008185
Physical Location & Seq
Reverse (-)
54064653 .. 54065848
1196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG336000.1

Sequence Viewer

Length: 336 bp
ATGAGGAAGGTGGTGAAATCTGTGTTTCATCACCGAAGCAAGCATATCGGGGATGATGAGTTTGCTGAGATTGGAAGGACTCGACCACGTCGGGGACGTCTTAAATTTAGAATTCTTGGTGATTCTCGACGTTGGTTACCTATGCTACTGTGGAGAGACATGTCTCAGCATCCGGGGTGGAGACGAGATCGACTGCGTCTAGTATGTGTTGCGGCGATGGTGGCCACGACGGGGATGGTGGCCGCAAGAGTGGCTGCGCAGGCGAAGATGGTGGCAAGGGCGCAGGCAAAGGCTTGTGTGCAAGCTGACGTGGTACAACAGCGGCGATGGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.97

Weight (kDa)

11.78

Isoelectric Point (pI)

71.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 100
Acc16I TGCGCA 1 cut(s) 258
AciI CCGC 3 cut(s) 212, 243, 322
AcoI YGGCCR 2 cut(s) 222, 240
AcsI RAATTY 2 cut(s) 104, 111
AcyI GRCGYC 1 cut(s) 97
AfaI GTAC 1 cut(s) 315
AfiI CCNNNNNNNGG 2 cut(s) 92, 231
AflIII ACRYGT 1 cut(s) 159
AjiI CACGTC 2 cut(s) 89, 310
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
Alw26I GTCTC 3 cut(s) 150, 168, 175
AoxI GGCC 2 cut(s) 222, 240
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 2 cut(s) 104, 111
AspLEI GCGC 2 cut(s) 259, 283
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 3 cut(s) 23, 25, 131
BalI TGGCCA 1 cut(s) 224
BbvI GCAGC 1 cut(s) 241
BccI CCATC 4 cut(s) 211, 229, 262, 321
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BcnI CCSGG 1 cut(s) 174
BcoDI GTCTC 3 cut(s) 150, 168, 175
BfaI CTAG 1 cut(s) 200
BisI GCNGC 4 cut(s) 213, 243, 255, 323
BlsI GCNGC 4 cut(s) 214, 244, 256, 324
Bme1390I CCNGG 1 cut(s) 174
BmgBI CACGTC 2 cut(s) 89, 310
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 174
BsaHI GRCGYC 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 173
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 231
BseDI CCNNGG 1 cut(s) 173
BseGI GGATG 3 cut(s) 58, 169, 240
BseLI CCNNNNNNNGG 2 cut(s) 92, 231
BseMII CTCAG 2 cut(s) 57, 179
BseXI GCAGC 1 cut(s) 241
BshFI GGCC 2 cut(s) 224, 242
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 2 cut(s) 92, 231
BsmAI GTCTC 3 cut(s) 150, 168, 175
BsmBI CGTCTC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 108
BsnI GGCC 2 cut(s) 224, 242
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 3 cut(s) 212, 243, 322
BspANI GGCC 2 cut(s) 224, 242
BspCNI CTCAG 2 cut(s) 58, 178
BssECI CCNNGG 1 cut(s) 173
BssMI GATC 1 cut(s) 187
BssNI GRCGYC 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 150
BstACI GRCGYC 1 cut(s) 97
BstC8I GCNNGC 4 cut(s) 41, 261, 285, 303
BstDEI CTNAG 2 cut(s) 66, 165
BstEII GGTNACC 1 cut(s) 135
BstF5I GGATG 3 cut(s) 58, 169, 240
BstHHI GCGC 2 cut(s) 259, 283
BstKTI GATC 1 cut(s) 190
BstMAI GTCTC 3 cut(s) 150, 168, 175
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 3 cut(s) 221, 251, 260
BstNSI RCATGY 1 cut(s) 163
BstPI GGTNACC 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 241
BsuRI GGCC 2 cut(s) 224, 242
BtgZI GCGATG 1 cut(s) 230
BtrI CACGTC 2 cut(s) 89, 310
BtsCI GGATG 3 cut(s) 58, 169, 240
Cac8I GCNNGC 4 cut(s) 41, 261, 285, 303
CfoI GCGC 2 cut(s) 259, 283
CseI GACGC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 314
CviAII CATG 1 cut(s) 160
CviJI RGCY 5 cut(s) 224, 242, 254, 293, 305
CviKI_1 RGCY 5 cut(s) 224, 242, 254, 293, 305
CviQI GTAC 1 cut(s) 314
DdeI CTNAG 2 cut(s) 66, 165
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
EaeI YGGCCR 2 cut(s) 222, 240
Eco91I GGTNACC 1 cut(s) 135
EcoO65I GGTNACC 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 175
FaeI CATG 1 cut(s) 163
FaiI YATR 4 cut(s) 45, 143, 161, 205
FaqI GGGAC 1 cut(s) 108
FatI CATG 1 cut(s) 159
Fnu4HI GCNGC 4 cut(s) 213, 243, 255, 323
FokI GGATG 3 cut(s) 65, 156, 247
Fsp4HI GCNGC 4 cut(s) 213, 243, 255, 323
FspBI CTAG 1 cut(s) 200
FspI TGCGCA 1 cut(s) 258
GlaI GCGC 2 cut(s) 258, 282
GluI GCNGC 4 cut(s) 213, 243, 255, 323
HaeIII GGCC 2 cut(s) 224, 242
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 185
HhaI GCGC 2 cut(s) 259, 283
Hin1I GRCGYC 1 cut(s) 97
Hin1II CATG 1 cut(s) 163
Hin6I GCGC 2 cut(s) 257, 281
HinP1I GCGC 2 cut(s) 257, 281
HinfI GANTC 2 cut(s) 79, 122
HpaII CCGG 1 cut(s) 173
HphI GGTGA 3 cut(s) 23, 25, 131
Hpy188III TCNNGA 1 cut(s) 126
Hpy99I CGWCG 3 cut(s) 93, 132, 232
HpyAV CCTTC 1 cut(s) 69
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4IV ACGT 4 cut(s) 88, 97, 130, 309
HpyCH4V TGCA 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 251, 260
HpyF3I CTNAG 2 cut(s) 66, 165
HpySE526I ACGT 4 cut(s) 88, 97, 130, 309
Hsp92I GRCGYC 1 cut(s) 97
Hsp92II CATG 1 cut(s) 163
HspAI GCGC 2 cut(s) 257, 281
Kzo9I GATC 1 cut(s) 187
LpnPI CCDG 3 cut(s) 186, 245, 269
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 200
MaeII ACGT 4 cut(s) 88, 97, 130, 309
MaeIII GTNAC 1 cut(s) 135
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 1 cut(s) 277
MlsI TGGCCA 1 cut(s) 224
MluCI AATT 2 cut(s) 104, 111
MluNI TGGCCA 1 cut(s) 224
MlyI GAGTC 1 cut(s) 73
Mox20I TGGCCA 1 cut(s) 224
MscI TGGCCA 1 cut(s) 224
MseI TTAA 1 cut(s) 102
Msp20I TGGCCA 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 322
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 174
MwoI GCNNNNNNNGC 3 cut(s) 221, 251, 260
NciI CCSGG 1 cut(s) 174
NdeII GATC 1 cut(s) 187
NlaIII CATG 1 cut(s) 163
NsbI TGCGCA 1 cut(s) 258
NspI RCATGY 1 cut(s) 163
PciI ACATGT 1 cut(s) 159
PcsI WCGNNNNNNNCGW 1 cut(s) 94
PfeI GAWTC 1 cut(s) 122
PflFI GACNNNGTC 2 cut(s) 87, 195
PkrI GCNGC 4 cut(s) 214, 244, 256, 324
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PscI ACATGT 1 cut(s) 159
PspEI GGTNACC 1 cut(s) 135
PsyI GACNNNGTC 2 cut(s) 87, 195
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 4 cut(s) 213, 243, 255, 323
Sau3AI GATC 1 cut(s) 187
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 174
SetI ASST 7 cut(s) 12, 91, 100, 133, 142, 307, 312
SfaNI GCATC 1 cut(s) 178
Sse9I AATT 2 cut(s) 104, 111
SsiI CCGC 3 cut(s) 212, 243, 322
SspMI CTAG 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 172
TaaI ACNGT 1 cut(s) 150
TaiI ACGT 4 cut(s) 91, 100, 133, 312
TaqI TCGA 3 cut(s) 82, 127, 190
TasI AATT 2 cut(s) 104, 111
TauI GCSGC 3 cut(s) 215, 245, 325
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 2 cut(s) 87, 195
XapI RAATTY 2 cut(s) 104, 111
XceI RCATGY 1 cut(s) 163
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
XspI CTAG 1 cut(s) 200
ZraI GACGTC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.