Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008185

Physical Location & Seq

Genomic Coordinates Forward (+)

34321119 .. 34321676

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG156000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCCGCTCCCAAAACCTAGCCTCATGTGCTCGGTGCTCCAAACATGGCGACCGCTGCCGGTCTCCATTCTAAGTGGAGAAACCTGCTCCACCCCCCCGGTGACCACCCGACAAAACCAAGGTTTTGAAACTTTCAGGGTTTCTGATCCTTGCCAAATTGATTTCGATCCAAACCGTGGCGGACCTCCAAGGGCGAGCTTTATGTGCTTTCCTCCAAGAGGCGGTGGCAGCTTGCTCTTAGGAGCGATTCGAGTCTTTGGCAATCGACTGTGTGGAGATCCTTCATCCATTGCTTCTCTTGAGTCGGGTCTCCGATCTACTTCATGTGGGTGGTCGGTAGGAGACTTCTCTCGGCCTCACCCTGCATTGGTCAAATTCTGGGATTTGAAGAAGTTGGTGAAATTGGTGATTTATCGCCGAAGCAAGCCTGTAGTGGAAAACGAGCTTGGTCGGACTCGACTGCTTCGGGGGCATCTCAAACTCAGAGTTTTTGGTGACTCGAGAAGTTGGATAAGGCCTCTGCTAATGTGGAGAGAAAAGGCTCAGGATCCAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

20.63

Weight (kDa)

10.29

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008185)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000016386 RLG00000019388 RLG00000023749 RLG00000025324 RLG00000029183 RLG00000029321
rosa_multiflora	Rmu_sc0000674.1_g000016 Rmu_sc0005706.1_g000007 Rmu_ssc0000421.1_g000059
rosa_roxburghii	Rroxscaffold_158G00443760 Rroxscaffold_4G00310830
rosa_rugosa	Rorug01G0064200 Rorug04G0428800
rosa_samantha	Rh1CG371300 Rh1DG388700 Rh2AG237800 Rh2DG245300 Rh4CG156000 Rh4DG117200 Rh6AG473200 Rh6BG089600 Rh6BG320100 Rh6DG336000 Rh7DG021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	176
AccBSI	CCGCTC	1 cut(s)	7
AciI	CCGC	4 cut(s)	5, 53, 180, 222
AclWI	GGATC	5 cut(s)	140, 161, 272, 542, 555
AcsI	RAATTY	1 cut(s)	374
AfiI	CCNNNNNNNGG	4 cut(s)	176, 218, 221, 367
AgsI	TTSAA	2 cut(s)	128, 388
AjnI	CCWGG	1 cut(s)	550
AjuI	GAANNNNNNNTTGG	2 cut(s)	429, 461
AluBI	AGCT	3 cut(s)	198, 231, 445
AluI	AGCT	3 cut(s)	198, 231, 445
Alw21I	GWGCWC	2 cut(s)	32, 39
Alw26I	GTCTC	3 cut(s)	67, 314, 336
AlwI	GGATC	5 cut(s)	140, 161, 272, 542, 555
Ama87I	CYCGRG	1 cut(s)	499
AoxI	GGCC	2 cut(s)	353, 515
ApeKI	GCWGC	2 cut(s)	55, 228
ApoI	RAATTY	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	182
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	5 cut(s)	112, 350, 409, 418, 506
AvaI	CYCGRG	1 cut(s)	499
AvaII	GGWCC	1 cut(s)	182
BamHI	GGATCC	1 cut(s)	547
Bbv12I	GWGCWC	2 cut(s)	32, 39
BbvI	GCAGC	2 cut(s)	42, 240
BciT130I	CCWGG	1 cut(s)	552
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	3 cut(s)	67, 314, 336
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	429
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	3 cut(s)	5, 56, 229
BlsI	GCNGC	3 cut(s)	6, 57, 230
Bme1390I	CCNGG	2 cut(s)	98, 552
Bme18I	GGWCC	1 cut(s)	182
BmeT110I	CYCGRG	1 cut(s)	499
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	549
BmrFI	CCNGG	2 cut(s)	98, 552
BmsI	GCATC	1 cut(s)	481
Bpu10I	CCTNAGC	1 cut(s)	543
BpuEI	CTTGAG	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	98
BsaBI	GATNNNNATC	1 cut(s)	165
BsaI	GGTCTC	2 cut(s)	67, 314
BsaJI	CCNNGG	5 cut(s)	96, 118, 175, 188, 551
Bsc4I	CCNNNNNNNGG	4 cut(s)	176, 218, 221, 367
Bse118I	RCCGGY	1 cut(s)	58
Bse3DI	GCAATG	1 cut(s)	288
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	552
BseDI	CCNNGG	5 cut(s)	96, 118, 175, 188, 551
BseGI	GGATG	1 cut(s)	284
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	4 cut(s)	176, 218, 221, 367
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	496, 557
BseXI	GCAGC	2 cut(s)	42, 240
Bsh1285I	CGRYCG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	355, 517
BsiEI	CGRYCG	1 cut(s)	53
BsiHKAI	GWGCWC	2 cut(s)	32, 39
BsiHKCI	CYCGRG	1 cut(s)	499
BsiSI	CCGG	2 cut(s)	59, 98
BslI	CCNNNNNNNGG	4 cut(s)	176, 218, 221, 367
BsmAI	GTCTC	3 cut(s)	67, 314, 336
BsnI	GGCC	2 cut(s)	355, 517
Bso31I	GGTCTC	2 cut(s)	67, 314
BsoBI	CYCGRG	1 cut(s)	499
Bsp1286I	GDGCHC	2 cut(s)	32, 39
Bsp143I	GATC	5 cut(s)	145, 166, 277, 314, 547
BspACI	CCGC	4 cut(s)	5, 53, 180, 222
BspANI	GGCC	2 cut(s)	355, 517
BspCNI	CTCAG	2 cut(s)	495, 556
BspLI	GGNNCC	1 cut(s)	549
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	5 cut(s)	140, 161, 272, 542, 555
BspTNI	GGTCTC	2 cut(s)	67, 314
BsrBI	CCGCTC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	58
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	5 cut(s)	96, 118, 175, 188, 551
BssMI	GATC	5 cut(s)	145, 166, 277, 314, 547
BssT1I	CCWWGG	2 cut(s)	118, 188
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	2 cut(s)	176, 270
BstC8I	GCNNGC	3 cut(s)	196, 233, 425
BstDEI	CTNAG	4 cut(s)	71, 238, 482, 543
BstDSI	CCRYGG	1 cut(s)	175
BstEII	GGTNACC	1 cut(s)	100
BstENI	CCTNNNNNAGG	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	284
BstKTI	GATC	5 cut(s)	148, 169, 280, 317, 550
BstMAI	GTCTC	3 cut(s)	67, 314, 336
BstMBI	GATC	5 cut(s)	145, 166, 277, 314, 547
BstMCI	CGRYCG	1 cut(s)	53
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 55, 204, 228, 469
BstNI	CCWGG	1 cut(s)	552
BstPI	GGTNACC	1 cut(s)	100
BstSCI	CCNGG	2 cut(s)	96, 550
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	42, 240
BstX2I	RGATCY	2 cut(s)	277, 547
BstYI	RGATCY	2 cut(s)	277, 547
BsuRI	GGCC	2 cut(s)	355, 517
BtgI	CCRYGG	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	284
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	3 cut(s)	196, 233, 425
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	182
CviAII	CATG	3 cut(s)	25, 45, 324
CviJI	RGCY	8 cut(s)	21, 198, 231, 355, 427, 445, 517, 542
CviKI_1	RGCY	8 cut(s)	21, 198, 231, 355, 427, 445, 517, 542
DdeI	CTNAG	4 cut(s)	71, 238, 482, 543
DpnI	GATC	5 cut(s)	147, 168, 279, 316, 549
DpnII	GATC	5 cut(s)	145, 166, 277, 314, 547
EciI	GGCGGA	1 cut(s)	195
Eco130I	CCWWGG	2 cut(s)	118, 188
Eco147I	AGGCCT	1 cut(s)	517
Eco31I	GGTCTC	2 cut(s)	67, 314
Eco47I	GGWCC	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	499
Eco91I	GGTNACC	1 cut(s)	100
EcoNI	CCTNNNNNAGG	1 cut(s)	216
EcoO65I	GGTNACC	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	550
EcoT14I	CCWWGG	2 cut(s)	118, 188
ErhI	CCWWGG	2 cut(s)	118, 188
FaeI	CATG	3 cut(s)	28, 48, 327
FaiI	YATR	4 cut(s)	26, 46, 203, 325
FatI	CATG	3 cut(s)	24, 44, 323
Fnu4HI	GCNGC	3 cut(s)	5, 56, 229
FokI	GGATG	1 cut(s)	271
Fsp4HI	GCNGC	3 cut(s)	5, 56, 229
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	3 cut(s)	5, 56, 229
HaeIII	GGCC	2 cut(s)	355, 517
HapII	CCGG	2 cut(s)	59, 98
Hin1II	CATG	3 cut(s)	28, 48, 327
HinfI	GANTC	5 cut(s)	247, 252, 302, 454, 497
HpaII	CCGG	2 cut(s)	59, 98
HphI	GGTGA	5 cut(s)	112, 350, 409, 418, 506
Hpy188I	TCNGA	4 cut(s)	145, 314, 453, 485
Hpy188III	TCNNGA	3 cut(s)	299, 501, 545
HpyAV	CCTTC	1 cut(s)	291
HpyCH4III	ACNGT	2 cut(s)	176, 270
HpyCH4V	TGCA	1 cut(s)	365
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 55, 204, 228, 469
HpyF3I	CTNAG	4 cut(s)	71, 238, 482, 543
Hsp92II	CATG	3 cut(s)	28, 48, 327
Kzo9I	GATC	5 cut(s)	145, 166, 277, 314, 547
LmnI	GCTCC	4 cut(s)	12, 42, 92, 242
LpnPI	CCDG	9 cut(s)	72, 97, 111, 121, 364, 375, 441, 530, 537
Lsp1109I	GCAGC	2 cut(s)	42, 240
LweI	GCATC	1 cut(s)	481
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	100, 494
MalI	GATC	5 cut(s)	147, 168, 279, 316, 549
MbiI	CCGCTC	1 cut(s)	7
MboI	GATC	5 cut(s)	145, 166, 277, 314, 547
MboII	GAAGA	1 cut(s)	400
MflI	RGATCY	2 cut(s)	277, 547
MhlI	GDGCHC	2 cut(s)	32, 39
MluCI	AATT	3 cut(s)	156, 374, 401
MlyI	GAGTC	4 cut(s)	261, 311, 448, 491
MmeI	TCCRAC	2 cut(s)	431, 488
MnlI	CCTC	6 cut(s)	32, 195, 212, 222, 366, 528
MslI	CAYNNNNRTG	1 cut(s)	328
MspA1I	CMGCKG	1 cut(s)	55
MspI	CCGG	2 cut(s)	59, 98
MspR9I	CCNGG	2 cut(s)	98, 552
MvaI	CCWGG	1 cut(s)	552
MwoI	GCNNNNNNNGC	5 cut(s)	27, 55, 204, 228, 469
NciI	CCSGG	1 cut(s)	98
NdeII	GATC	5 cut(s)	145, 166, 277, 314, 547
NlaIII	CATG	3 cut(s)	28, 48, 327
NlaIV	GGNNCC	1 cut(s)	549
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	2 cut(s)	100, 494
PaeR7I	CTCGAG	1 cut(s)	499
PceI	AGGCCT	1 cut(s)	517
PfeI	GAWTC	1 cut(s)	247
PflMI	CCANNNNNTGG	1 cut(s)	176
PkrI	GCNGC	3 cut(s)	6, 57, 230
PleI	GAGTC	4 cut(s)	260, 310, 448, 491
PpsI	GAGTC	4 cut(s)	260, 310, 448, 491
Psp6I	CCWGG	1 cut(s)	550
PspEI	GGTNACC	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	550
PspN4I	GGNNCC	1 cut(s)	549
PspPI	GGNCC	1 cut(s)	182
PsuI	RGATCY	2 cut(s)	277, 547
RseI	CAYNNNNRTG	1 cut(s)	328
SatI	GCNGC	3 cut(s)	5, 56, 229
Sau3AI	GATC	5 cut(s)	145, 166, 277, 314, 547
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	4 cut(s)	261, 311, 448, 491
ScrFI	CCNGG	2 cut(s)	98, 552
SduI	GDGCHC	2 cut(s)	32, 39
SetI	ASST	7 cut(s)	19, 86, 124, 187, 200, 233, 447
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	429
Sfr274I	CTCGAG	1 cut(s)	499
SinI	GGWCC	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	499
SmiMI	CAYNNNNRTG	1 cut(s)	328
SmlI	CTYRAG	2 cut(s)	299, 499
SmoI	CTYRAG	2 cut(s)	299, 499
Sse9I	AATT	3 cut(s)	156, 374, 401
SseBI	AGGCCT	1 cut(s)	517
SsiI	CCGC	4 cut(s)	5, 53, 180, 222
SspMI	CTAG	1 cut(s)	18
StuI	AGGCCT	1 cut(s)	517
StyD4I	CCNGG	2 cut(s)	96, 550
StyI	CCWWGG	2 cut(s)	118, 188
TaaI	ACNGT	2 cut(s)	176, 270
TaqI	TCGA	5 cut(s)	165, 250, 265, 457, 500
TasI	AATT	3 cut(s)	156, 374, 401
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	247
TseFI	GTSAC	2 cut(s)	100, 494
TseI	GCWGC	2 cut(s)	55, 228
Tsp45I	GTSAC	2 cut(s)	100, 494
TspDTI	ATGAA	2 cut(s)	273, 312
Van91I	CCANNNNNTGG	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	182
XagI	CCTNNNNNAGG	1 cut(s)	216
XapI	RAATTY	1 cut(s)	374
XhoI	CTCGAG	1 cut(s)	499
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.