Rorug01G0064200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0008185
Physical Location & Seq
Forward (+)
10482975 .. 10484316
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0064200.1

Sequence Viewer

Length: 1236 bp
ATGGTCACCATCGAGGGCCCTAAGGGATCAGACATCGAGGCGAACTATGAAAGCTCTGATAAGTCAGAACCCGAGGTTAATAAGATCACTCTACGCTCTGGTCTGAGCATTCTAGGAGCTGACAAGCATAAACAAGTGAATGTGCCATCTGATAGCCCGAAAAAGTCAAAGTCAAAAATCGTTCTAGAGAACACGGCGGACAAAACTGCAAAAGATTCGACGTCGAAGAACTCTAAACTGGAACAGAACGAGGGCCAAGTAAAGGAGTCATCACAGAAATATAGATATAATGTGCTGGCTCACCTGAAACGTGTCCCGGCTACATTGAGTGTCTATGACGCACTGCAAATGTCGAGGGAACTAAGGGAAGCACTCATTGAAGCCTTAATGAGCCCTGACATGTACAAGGAACAAATTGCAGAGGTTGCTATAACCACGCCAAAAGTTTGTGCAAGTTGTATGGAATGCATCATATTTGGTGAAGAGGACCTCTTGCTAGGATCAGAGTACCACAATAGACCCCATTATGTTACAGGACTTGTGGGAAACACGACGCTTAATCAGATCCTCTTAGATGGTGGTTCAGCAGTGAATCTTCTACCGCTCAAGACACTCCGCACGATAGGGATAAGTGTGAAACAATTGACCCCATCCATGTTGACAATCCAGGGATATAACCAATCCGGGCAAAAGGCCATGGGCACAGTTACACTCCAGATGGAGATTGGGGGGGCTATGCTCGGACGCATTATTTCATATGGTGAGGCCAAGAAAGTAGTGGTAGATGTGGATCCCTTTAAAGCTGAAGAAGTAAACTACTTTGATGCCAAATTCTACAAGCCTCTAACCTTTAGTCTGACAGAGCAGCTAAAGACTGGAATATTGAAGGATAGCATAGTTGAACGACAGTCTGAAAAACCTGAGGTTGCTAAGCCACCAAAGCCCATCCGAGTCAAGGTGATGACCCCAAAAGATGAGAAGCATTCAATCTCAACAACAATACGGCCTAAAGTGATCTTCAAATACTCAAAGAAAGACCAGCGAGAACCTGGACAAAATGTGTTAATACCAGTCAGAGATACAATTGAGGCAATCATGACGAGCTACACCAAGCCTCTCCTCAAGATTGATCAGTCTATCCCAGGGGCAATATGGTTACTTCCACAGTATTTGGGAAAAAGCAAAGCCAGAACAAGCGCATTGTCTCATTCAGAAATACAACACTTGCTCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

411

Amino Acids

45.6

Weight (kDa)

9.03

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 224
AccBSI CCGCTC 1 cut(s) 604
AciI CCGC 3 cut(s) 197, 602, 616
AclWI GGATC 5 cut(s) 34, 508, 559, 785, 798
AcsI RAATTY 1 cut(s) 830
AcuI CTGAAG 1 cut(s) 825
AcyI GRCGYC 1 cut(s) 221
AfaI GTAC 2 cut(s) 404, 509
AfiI CCNNNNNNNGG 2 cut(s) 262, 955
AflIII ACRYGT 2 cut(s) 310, 399
AgsI TTSAA 5 cut(s) 380, 886, 902, 987, 1021
AjnI CCWGG 3 cut(s) 666, 1048, 1141
AluBI AGCT 5 cut(s) 54, 119, 803, 868, 1104
AluI AGCT 5 cut(s) 54, 119, 803, 868, 1104
Alw26I GTCTC 1 cut(s) 1209
AlwI GGATC 5 cut(s) 34, 508, 559, 785, 798
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 5 cut(s) 16, 253, 693, 765, 1004
ApaI GGGCCC 1 cut(s) 20
ApeKI GCWGC 1 cut(s) 865
ApoI RAATTY 1 cut(s) 830
AspLEI GCGC 1 cut(s) 1199
AspS9I GGNCC 4 cut(s) 16, 17, 253, 487
AsuC2I CCSGG 2 cut(s) 317, 685
AsuHPI GGTGA 4 cut(s) 293, 491, 773, 970
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 1 cut(s) 487
AxyI CCTNAGG 2 cut(s) 21, 921
BaeGI GKGCMC 2 cut(s) 20, 704
BamHI GGATCC 1 cut(s) 790
BanII GRGCYC 2 cut(s) 20, 395
BbvI GCAGC 1 cut(s) 877
BccI CCATC 6 cut(s) 17, 154, 569, 658, 712, 953
BceAI ACGGC 2 cut(s) 210, 1019
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BciT130I CCWGG 3 cut(s) 668, 1050, 1143
BclI TGATCA 1 cut(s) 1129
BcnI CCSGG 2 cut(s) 317, 685
BcoDI GTCTC 1 cut(s) 1209
BfaI CTAG 3 cut(s) 113, 185, 497
BisI GCNGC 1 cut(s) 866
BlpI GCTNAGC 1 cut(s) 930
BlsI GCNGC 1 cut(s) 867
Bme1390I CCNGG 5 cut(s) 317, 668, 685, 1050, 1143
Bme18I GGWCC 1 cut(s) 487
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 4 cut(s) 16, 17, 253, 487
BmiI GGNNCC 2 cut(s) 18, 792
BmrFI CCNGG 5 cut(s) 317, 668, 685, 1050, 1143
BmsI GCATC 2 cut(s) 477, 814
BpmI CTGGAG 1 cut(s) 698
Bpu1102I GCTNAGC 1 cut(s) 930
BpuEI CTTGAG 2 cut(s) 590, 1106
BpuMI CCSGG 2 cut(s) 317, 685
BsaBI GATNNNNATC 1 cut(s) 789
BsaHI GRCGYC 1 cut(s) 221
BsaJI CCNNGG 5 cut(s) 72, 667, 696, 1141, 1142
BsaXI ACNNNNNCTCC 1 cut(s) 1212
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 955
Bse1I ACTGG 3 cut(s) 243, 880, 1070
Bse21I CCTNAGG 2 cut(s) 21, 921
Bse8I GATNNNNATC 1 cut(s) 789
BseBI CCWGG 3 cut(s) 668, 1050, 1143
BseDI CCNNGG 5 cut(s) 72, 667, 696, 1141, 1142
BseGI GGATG 2 cut(s) 650, 945
BseJI GATNNNNATC 1 cut(s) 789
BseLI CCNNNNNNNGG 2 cut(s) 262, 955
BseMII CTCAG 2 cut(s) 95, 912
BseNI ACTGG 3 cut(s) 243, 880, 1070
BseRI GAGGAG 1 cut(s) 1109
BseSI GKGCMC 2 cut(s) 20, 704
BseXI GCAGC 1 cut(s) 877
BshFI GGCC 5 cut(s) 18, 255, 695, 767, 1006
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 2 cut(s) 317, 684
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 2 cut(s) 262, 955
BsmAI GTCTC 1 cut(s) 1209
BsmFI GGGAC 1 cut(s) 299
BsmI GAATGC 3 cut(s) 108, 470, 982
BsnI GGCC 5 cut(s) 18, 255, 695, 767, 1006
BsoBI CYCGRG 1 cut(s) 71
Bsp120I GGGCCC 1 cut(s) 16
Bsp1286I GDGCHC 3 cut(s) 20, 395, 704
Bsp1407I TGTACA 1 cut(s) 402
Bsp143I GATC 7 cut(s) 26, 84, 500, 564, 790, 1014, 1129
Bsp1720I GCTNAGC 1 cut(s) 930
Bsp19I CCATGG 1 cut(s) 696
BspACI CCGC 3 cut(s) 197, 602, 616
BspANI GGCC 5 cut(s) 18, 255, 695, 767, 1006
BspCNI CTCAG 2 cut(s) 96, 913
BspHI TCATGA 1 cut(s) 1095
BspLI GGNNCC 2 cut(s) 18, 792
BspPI GGATC 5 cut(s) 34, 508, 559, 785, 798
BsrBI CCGCTC 1 cut(s) 604
BsrGI TGTACA 1 cut(s) 402
BsrI ACTGG 3 cut(s) 243, 880, 1070
BssECI CCNNGG 5 cut(s) 72, 667, 696, 1141, 1142
BssMI GATC 7 cut(s) 26, 84, 500, 564, 790, 1014, 1129
BssNI GRCGYC 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 696
Bst2UI CCWGG 3 cut(s) 668, 1050, 1143
Bst4CI ACNGT 3 cut(s) 706, 909, 1167
Bst6I CTCTTC 1 cut(s) 477
BstACI GRCGYC 1 cut(s) 221
BstAPI GCANNNNNTGC 1 cut(s) 425
BstAUI TGTACA 1 cut(s) 402
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 6 cut(s) 21, 104, 362, 571, 921, 930
BstDSI CCRYGG 1 cut(s) 696
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 2 cut(s) 650, 945
BstHHI GCGC 1 cut(s) 1199
BstKTI GATC 7 cut(s) 29, 87, 503, 567, 793, 1017, 1132
BstMAI GTCTC 1 cut(s) 1209
BstMBI GATC 7 cut(s) 26, 84, 500, 564, 790, 1014, 1129
BstMWI GCNNNNNNNGC 2 cut(s) 425, 940
BstNI CCWGG 3 cut(s) 668, 1050, 1143
BstNSI RCATGY 1 cut(s) 403
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 5 cut(s) 315, 666, 683, 1048, 1141
BstSLI GKGCMC 2 cut(s) 20, 704
BstV1I GCAGC 1 cut(s) 877
BstX2I RGATCY 2 cut(s) 564, 790
BstYI RGATCY 2 cut(s) 564, 790
Bsu36I CCTNAGG 2 cut(s) 21, 921
BsuRI GGCC 5 cut(s) 18, 255, 695, 767, 1006
BtgI CCRYGG 1 cut(s) 696
BtsCI GGATG 2 cut(s) 650, 945
BtsI GCAGTG 2 cut(s) 341, 594
BtsIMutI CAGTG 2 cut(s) 341, 594
Cac8I GCNNGC 1 cut(s) 297
CciI TCATGA 1 cut(s) 1095
CfoI GCGC 1 cut(s) 1199
Cfr13I GGNCC 4 cut(s) 16, 17, 253, 487
CseI GACGC 3 cut(s) 347, 562, 753
Csp6I GTAC 2 cut(s) 403, 508
CspCI CAANNNNNGTGG 2 cut(s) 1152, 1187
CviAII CATG 4 cut(s) 400, 655, 697, 1096
CviQI GTAC 2 cut(s) 403, 508
DdeI CTNAG 6 cut(s) 21, 104, 362, 571, 921, 930
DpnI GATC 7 cut(s) 28, 86, 502, 566, 792, 1016, 1131
DpnII GATC 7 cut(s) 26, 84, 500, 564, 790, 1014, 1129
DraI TTTAAA 1 cut(s) 799
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
EciI GGCGGA 1 cut(s) 212
Eco130I CCWWGG 1 cut(s) 696
Eco24I GRGCYC 2 cut(s) 20, 395
Eco47I GGWCC 1 cut(s) 487
Eco57I CTGAAG 1 cut(s) 825
Eco81I CCTNAGG 2 cut(s) 21, 921
Eco88I CYCGRG 1 cut(s) 71
Eco91I GGTNACC 1 cut(s) 4
EcoO109I RGGNCCY 3 cut(s) 16, 17, 487
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 3 cut(s) 666, 1048, 1141
EcoT14I CCWWGG 1 cut(s) 696
EcoT22I ATGCAT 1 cut(s) 470
EcoT38I GRGCYC 2 cut(s) 20, 395
ErhI CCWWGG 1 cut(s) 696
FaeI CATG 4 cut(s) 403, 658, 700, 1099
FaqI GGGAC 1 cut(s) 299
FatI CATG 4 cut(s) 399, 654, 696, 1095
FauNDI CATATG 1 cut(s) 757
FbaI TGATCA 1 cut(s) 1129
Fnu4HI GCNGC 1 cut(s) 866
FokI GGATG 2 cut(s) 637, 932
FriOI GRGCYC 2 cut(s) 20, 395
Fsp4HI GCNGC 1 cut(s) 866
FspBI CTAG 3 cut(s) 113, 185, 497
GlaI GCGC 1 cut(s) 1198
GluI GCNGC 1 cut(s) 866
GsuI CTGGAG 1 cut(s) 698
HaeIII GGCC 5 cut(s) 18, 255, 695, 767, 1006
HapII CCGG 2 cut(s) 317, 684
HgaI GACGC 3 cut(s) 347, 562, 753
HhaI GCGC 1 cut(s) 1199
Hin1I GRCGYC 1 cut(s) 221
Hin1II CATG 4 cut(s) 403, 658, 700, 1099
Hin6I GCGC 1 cut(s) 1197
HinP1I GCGC 1 cut(s) 1197
HincII GTYRAC 1 cut(s) 660
HindII GTYRAC 1 cut(s) 660
HinfI GANTC 4 cut(s) 215, 266, 592, 951
HpaII CCGG 2 cut(s) 317, 684
HphI GGTGA 4 cut(s) 293, 491, 773, 970
Hpy166II GTNNAC 2 cut(s) 660, 814
Hpy188III TCNNGA 5 cut(s) 185, 607, 715, 1096, 1123
Hpy8I GTNNAC 2 cut(s) 660, 814
Hpy99I CGWCG 3 cut(s) 223, 226, 556
HpyAV CCTTC 1 cut(s) 880
HpyCH4III ACNGT 3 cut(s) 706, 909, 1167
HpyCH4IV ACGT 2 cut(s) 221, 310
HpyCH4V TGCA 5 cut(s) 209, 346, 419, 452, 468
HpyF10VI GCNNNNNNNGC 2 cut(s) 425, 940
HpyF3I CTNAG 6 cut(s) 21, 104, 362, 571, 921, 930
HpySE526I ACGT 2 cut(s) 221, 310
Hsp92I GRCGYC 1 cut(s) 221
Hsp92II CATG 4 cut(s) 403, 658, 700, 1099
HspAI GCGC 1 cut(s) 1197
Ksp22I TGATCA 1 cut(s) 1129
Kzo9I GATC 7 cut(s) 26, 84, 500, 564, 790, 1014, 1129
LmnI GCTCC 2 cut(s) 116, 1233
Lsp1109I GCAGC 1 cut(s) 877
LweI GCATC 2 cut(s) 477, 814
MaeI CTAG 3 cut(s) 113, 185, 497
MaeII ACGT 2 cut(s) 221, 310
MaeIII GTNAC 4 cut(s) 4, 529, 706, 1155
MalI GATC 7 cut(s) 28, 86, 502, 566, 792, 1016, 1131
MbiI CCGCTC 1 cut(s) 604
MboI GATC 7 cut(s) 26, 84, 500, 564, 790, 1014, 1129
MboII GAAGA 5 cut(s) 238, 494, 587, 818, 1009
MfeI CAATTG 2 cut(s) 641, 1083
MflI RGATCY 2 cut(s) 564, 790
MhlI GDGCHC 3 cut(s) 20, 395, 704
MluCI AATT 4 cut(s) 414, 641, 830, 1083
MlyI GAGTC 2 cut(s) 275, 960
Mph1103I ATGCAT 1 cut(s) 470
MseI TTAA 5 cut(s) 78, 386, 558, 798, 1064
MspI CCGG 2 cut(s) 317, 684
MspR9I CCNGG 5 cut(s) 317, 668, 685, 1050, 1143
MunI CAATTG 2 cut(s) 641, 1083
Mva1269I GAATGC 3 cut(s) 108, 470, 982
MvaI CCWGG 3 cut(s) 668, 1050, 1143
MwoI GCNNNNNNNGC 2 cut(s) 425, 940
NciI CCSGG 2 cut(s) 317, 685
NcoI CCATGG 1 cut(s) 696
NdeI CATATG 1 cut(s) 757
NdeII GATC 7 cut(s) 26, 84, 500, 564, 790, 1014, 1129
NlaIII CATG 4 cut(s) 403, 658, 700, 1099
NlaIV GGNNCC 2 cut(s) 18, 792
NmuCI GTSAC 1 cut(s) 4
NsiI ATGCAT 1 cut(s) 470
NspI RCATGY 1 cut(s) 403
PagI TCATGA 1 cut(s) 1095
PasI CCCWGGG 1 cut(s) 1142
PciI ACATGT 1 cut(s) 399
PctI GAATGC 3 cut(s) 108, 470, 982
PfeI GAWTC 2 cut(s) 215, 592
PkrI GCNGC 1 cut(s) 867
PleI GAGTC 2 cut(s) 274, 959
PpsI GAGTC 2 cut(s) 274, 959
PpuMI RGGWCCY 1 cut(s) 487
PscI ACATGT 1 cut(s) 399
Psp5II RGGWCCY 1 cut(s) 487
Psp6I CCWGG 3 cut(s) 666, 1048, 1141
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 3 cut(s) 666, 1048, 1141
PspN4I GGNNCC 2 cut(s) 18, 792
PspOMI GGGCCC 1 cut(s) 16
PspPI GGNCC 4 cut(s) 16, 17, 253, 487
PspPPI RGGWCCY 1 cut(s) 487
PsuI RGATCY 2 cut(s) 564, 790
RsaI GTAC 2 cut(s) 404, 509
RsaNI GTAC 2 cut(s) 403, 508
SaqAI TTAA 5 cut(s) 78, 386, 558, 798, 1064
SatI GCNGC 1 cut(s) 866
Sau3AI GATC 7 cut(s) 26, 84, 500, 564, 790, 1014, 1129
Sau96I GGNCC 4 cut(s) 16, 17, 253, 487
SchI GAGTC 2 cut(s) 275, 960
ScrFI CCNGG 5 cut(s) 317, 668, 685, 1050, 1143
SduI GDGCHC 3 cut(s) 20, 395, 704
SfaNI GCATC 2 cut(s) 477, 814
SinI GGWCC 1 cut(s) 487
SmlI CTYRAG 2 cut(s) 605, 1121
SmoI CTYRAG 2 cut(s) 605, 1121
Sse9I AATT 4 cut(s) 414, 641, 830, 1083
SsiI CCGC 3 cut(s) 197, 602, 616
SspI AATATT 1 cut(s) 882
SspMI CTAG 3 cut(s) 113, 185, 497
StyD4I CCNGG 5 cut(s) 315, 666, 683, 1048, 1141
StyI CCWWGG 1 cut(s) 696
TaaI ACNGT 3 cut(s) 706, 909, 1167
TaiI ACGT 2 cut(s) 224, 313
TaqI TCGA 5 cut(s) 12, 36, 218, 224, 353
TasI AATT 4 cut(s) 414, 641, 830, 1083
TatI WGTACW 1 cut(s) 402
TfiI GAWTC 2 cut(s) 215, 592
Tru1I TTAA 5 cut(s) 78, 386, 558, 798, 1064
Tru9I TTAA 5 cut(s) 78, 386, 558, 798, 1064
TscAI CASTG 2 cut(s) 348, 594
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 1 cut(s) 865
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 63, 744
TspRI CASTG 2 cut(s) 348, 594
VpaK11BI GGWCC 1 cut(s) 487
XapI RAATTY 1 cut(s) 830
XbaI TCTAGA 1 cut(s) 184
XceI RCATGY 1 cut(s) 403
XcmI CCANNNNNNNNNTGG 4 cut(s) 722, 775, 1046, 1149
XspI CTAG 3 cut(s) 113, 185, 497
ZraI GACGTC 1 cut(s) 222
Zsp2I ATGCAT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.