Rroxscaffold_4G00310830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0008185
Physical Location & Seq
Reverse (-)
32980337 .. 32980606
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00310830.1

Sequence Viewer

Length: 270 bp
ATGGGGGTCGAGACCCGGATCCGATTGATGGCGGAGAGAATCTTTGCGCTCCAATCCGTGGAAGTGGCGAAGATAGTCATCATGCGTCATTCTCGCAGATGCATTGATAGAAGAAAGCCTGGCCTTGGTGAATGCAAAGCATGCCGGCAAGGTGACCGAGGTGAGAAGATGGCGGCGTCTCTGCGTTTGGCGAGGGTGCAACAAGTTGGGTGCCCAGATCATCTTGGGAGCCCAAAAGGATTCAGCGGCCCAAATCAGTTTGGGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.82

Weight (kDa)

10.49

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 210
AccB7I CCANNNNNTGG 1 cut(s) 58
AciI CCGC 3 cut(s) 32, 173, 246
AclWI GGATC 2 cut(s) 13, 26
AcyI GRCGYC 1 cut(s) 176
AfiI CCNNNNNNNGG 3 cut(s) 28, 58, 125
AjnI CCWGG 1 cut(s) 118
Alw26I GTCTC 2 cut(s) 5, 183
AlwI GGATC 2 cut(s) 13, 26
AoxI GGCC 2 cut(s) 121, 247
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 248
AsuC2I CCSGG 1 cut(s) 16
AsuHPI GGTGA 3 cut(s) 140, 164, 173
BaeGI GKGCMC 1 cut(s) 215
BamHI GGATCC 1 cut(s) 18
BanI GGYRCC 1 cut(s) 210
BanII GRGCYC 1 cut(s) 233
BccI CCATC 2 cut(s) 22, 163
BciT130I CCWGG 1 cut(s) 120
BcnI CCSGG 1 cut(s) 16
BcoDI GTCTC 2 cut(s) 5, 183
BisI GCNGC 2 cut(s) 174, 247
BlsI GCNGC 2 cut(s) 175, 248
Bme1390I CCNGG 2 cut(s) 16, 120
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 3 cut(s) 20, 212, 230
BmrFI CCNGG 2 cut(s) 16, 120
BmsI GCATC 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 16
BsaBI GATNNNNATC 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 176
BsaI GGTCTC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 57, 124, 157
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 58, 125
Bse118I RCCGGY 1 cut(s) 144
Bse8I GATNNNNATC 1 cut(s) 77
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 3 cut(s) 57, 124, 157
BseJI GATNNNNATC 1 cut(s) 77
BseLI CCNNNNNNNGG 3 cut(s) 28, 58, 125
BseSI GKGCMC 1 cut(s) 215
BshFI GGCC 2 cut(s) 123, 249
BshNI GGYRCC 1 cut(s) 210
BsiSI CCGG 2 cut(s) 16, 145
BslI CCNNNNNNNGG 3 cut(s) 28, 58, 125
BsmAI GTCTC 2 cut(s) 5, 183
BsmBI CGTCTC 1 cut(s) 183
BsmI GAATGC 1 cut(s) 137
BsnI GGCC 2 cut(s) 123, 249
Bso31I GGTCTC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 215, 233
Bsp143I GATC 2 cut(s) 18, 217
BspACI CCGC 3 cut(s) 32, 173, 246
BspANI GGCC 2 cut(s) 123, 249
BspLI GGNNCC 3 cut(s) 20, 212, 230
BspPI GGATC 2 cut(s) 13, 26
BspT107I GGYRCC 1 cut(s) 210
BspTNI GGTCTC 1 cut(s) 5
BsrFI RCCGGY 1 cut(s) 144
BssAI RCCGGY 1 cut(s) 144
BssECI CCNNGG 3 cut(s) 57, 124, 157
BssMI GATC 2 cut(s) 18, 217
BssNI GRCGYC 1 cut(s) 176
BssT1I CCWWGG 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 176
BstAPI GCANNNNNTGC 1 cut(s) 141
BstC8I GCNNGC 2 cut(s) 142, 146
BstDSI CCRYGG 1 cut(s) 57
BstEII GGTNACC 1 cut(s) 152
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 2 cut(s) 21, 220
BstMAI GTCTC 2 cut(s) 5, 183
BstMBI GATC 2 cut(s) 18, 217
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 1 cut(s) 144
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 14, 118
BstSLI GKGCMC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BsuRI GGCC 2 cut(s) 123, 249
BtgI CCRYGG 1 cut(s) 57
Cac8I GCNNGC 2 cut(s) 142, 146
CfoI GCGC 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 248
CseI GACGC 2 cut(s) 74, 165
CviAII CATG 2 cut(s) 82, 141
CviJI RGCY 5 cut(s) 118, 123, 231, 249, 267
CviKI_1 RGCY 5 cut(s) 118, 123, 231, 249, 267
DpnI GATC 2 cut(s) 20, 219
DpnII GATC 2 cut(s) 18, 217
EciI GGCGGA 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 233
Eco31I GGTCTC 1 cut(s) 5
Eco91I GGTNACC 1 cut(s) 152
EcoO65I GGTNACC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 124
EcoT22I ATGCAT 1 cut(s) 104
EcoT38I GRGCYC 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 124
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 2 cut(s) 85, 144
FaiI YATR 2 cut(s) 83, 142
FatI CATG 2 cut(s) 81, 140
Fnu4HI GCNGC 2 cut(s) 174, 247
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 2 cut(s) 174, 247
GlaI GCGC 1 cut(s) 48
GluI GCNGC 2 cut(s) 174, 247
HaeIII GGCC 2 cut(s) 123, 249
HapII CCGG 2 cut(s) 16, 145
HgaI GACGC 2 cut(s) 74, 165
HhaI GCGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 176
Hin1II CATG 2 cut(s) 85, 144
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HinfI GANTC 2 cut(s) 39, 240
HpaII CCGG 2 cut(s) 16, 145
HphI GGTGA 3 cut(s) 140, 164, 173
Hpy188I TCNGA 1 cut(s) 23
Hpy188III TCNNGA 1 cut(s) 10
HpyCH4V TGCA 3 cut(s) 102, 135, 199
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
Hsp92I GRCGYC 1 cut(s) 176
Hsp92II CATG 2 cut(s) 85, 144
HspAI GCGC 1 cut(s) 47
KroI GCCGGC 1 cut(s) 144
KroNI GCCGGC 1 cut(s) 146
Kzo9I GATC 2 cut(s) 18, 217
LmnI GCTCC 2 cut(s) 54, 228
LpnPI CCDG 5 cut(s) 29, 105, 132, 158, 228
LweI GCATC 1 cut(s) 89
MaeIII GTNAC 1 cut(s) 152
MalI GATC 2 cut(s) 20, 219
MboI GATC 2 cut(s) 18, 217
MboII GAAGA 3 cut(s) 82, 123, 178
MflI RGATCY 1 cut(s) 18
MhlI GDGCHC 2 cut(s) 215, 233
MnlI CCTC 2 cut(s) 152, 186
Mph1103I ATGCAT 1 cut(s) 104
MroNI GCCGGC 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 246
MspI CCGG 2 cut(s) 16, 145
MspR9I CCNGG 2 cut(s) 16, 120
Mva1269I GAATGC 1 cut(s) 137
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 141
NaeI GCCGGC 1 cut(s) 146
NciI CCSGG 1 cut(s) 16
NdeII GATC 2 cut(s) 18, 217
NgoMIV GCCGGC 1 cut(s) 144
NlaIII CATG 2 cut(s) 85, 144
NlaIV GGNNCC 3 cut(s) 20, 212, 230
NmuCI GTSAC 1 cut(s) 152
NsiI ATGCAT 1 cut(s) 104
NspI RCATGY 1 cut(s) 144
PaeI GCATGC 1 cut(s) 144
PctI GAATGC 1 cut(s) 137
PdiI GCCGGC 1 cut(s) 146
PfeI GAWTC 2 cut(s) 39, 240
PflMI CCANNNNNTGG 1 cut(s) 58
PkrI GCNGC 2 cut(s) 175, 248
Psp6I CCWGG 1 cut(s) 118
PspEI GGTNACC 1 cut(s) 152
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 3 cut(s) 20, 212, 230
PspPI GGNCC 1 cut(s) 248
PsuI RGATCY 1 cut(s) 18
SatI GCNGC 2 cut(s) 174, 247
Sau3AI GATC 2 cut(s) 18, 217
Sau96I GGNCC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 16, 120
SduI GDGCHC 2 cut(s) 215, 233
SetI ASST 2 cut(s) 154, 163
SfaNI GCATC 1 cut(s) 89
SphI GCATGC 1 cut(s) 144
SsiI CCGC 3 cut(s) 32, 173, 246
StyD4I CCNGG 2 cut(s) 14, 118
StyI CCWWGG 1 cut(s) 124
TaqI TCGA 1 cut(s) 9
TaqII GACCGA 1 cut(s) 171
TauI GCSGC 2 cut(s) 176, 249
TfiI GAWTC 2 cut(s) 39, 240
TseFI GTSAC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 152
TspGWI ACGGA 1 cut(s) 46
Van91I CCANNNNNTGG 1 cut(s) 58
XceI RCATGY 1 cut(s) 144
Zsp2I ATGCAT 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.