Rorug04G0428800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0008185
Physical Location & Seq
Reverse (-)
58644516 .. 58646156
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0428800.1

Sequence Viewer

Length: 606 bp
ATGTACTCGTCAAAGCCGAATTCGTACGAGAAGTTCTCGGAGTCCAACACCGATGCTGCTTCTCCACCGACGGGTATTCCGGTCAGCTCCAGCAACCCTTTCAGTCATGATGATCATGATCATGACAACAGCTCCCAAATGCCGCCTGCTCCGCCATACCACCTCCGCCCTAGAGCCCCCGAGCCGTGGAAGACCGGCCTCTGCGACTGCCTCTCCGATCCCAAAAACTGCTGCACAACATTTTGGTGCCCTTGTATCACTTTCGGCCAGATTGCAGAGATTGTGGATAAGGGCTCTACTTCTTGTGGTGCAAGTGGAGCACTATACACTCTGATATTTTGTGTGACTGGTTGTCCTTGCTTCTATTCATGCTTCTACCGCTCCAAAATGAGGCAGCAGTACACTCTTGATGAGAGCCCTTGTGGTGATTGCTTGGTTCATTGCTTCTGCGAGTACTGCGCCCTGTGCCAGGAGTACCGTGAGCTTCAAAATCGCGGTTTCGACATGGTTATCGGATGGCATGGAAATATCGAGGAAAGGAACCGTGAAGTGGCAATGAATCCGGTGCCCCCGGTCATGGAGGAAGGCATGAGTCGAGATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.55

Weight (kDa)

4.95

Isoelectric Point (pI)

64.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 63 - 161 4.3e-35 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 246, 565
AccBSI CCGCTC 1 cut(s) 381
AccII CGCG 1 cut(s) 495
AciI CCGC 5 cut(s) 143, 152, 166, 379, 495
AclWI GGATC 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 265
AcsI RAATTY 1 cut(s) 19
AfaI GTAC 5 cut(s) 5, 26, 401, 455, 476
AfiI CCNNNNNNNGG 6 cut(s) 71, 186, 390, 469, 550, 577
AgsI TTSAA 1 cut(s) 488
AhdI GACNNNNNGTC 1 cut(s) 351
AjnI CCWGG 1 cut(s) 468
AluBI AGCT 3 cut(s) 87, 132, 484
AluI AGCT 3 cut(s) 87, 132, 484
Alw21I GWGCWC 1 cut(s) 322
AlwI GGATC 1 cut(s) 212
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 2 cut(s) 196, 265
ApeKI GCWGC 3 cut(s) 56, 231, 394
ApoI RAATTY 1 cut(s) 19
AspLEI GCGC 1 cut(s) 461
AsuC2I CCSGG 1 cut(s) 572
AsuHPI GGTGA 1 cut(s) 437
AvaI CYCGRG 1 cut(s) 179
BaeGI GKGCMC 2 cut(s) 251, 570
BanI GGYRCC 2 cut(s) 246, 565
BanII GRGCYC 3 cut(s) 178, 296, 419
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 322
BbvI GCAGC 3 cut(s) 43, 218, 406
BccI CCATC 1 cut(s) 510
BceAI ACGGC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 470
BclI TGATCA 2 cut(s) 112, 118
BcnI CCSGG 1 cut(s) 572
BfaI CTAG 1 cut(s) 171
BisI GCNGC 4 cut(s) 57, 143, 232, 395
BlsI GCNGC 4 cut(s) 58, 144, 233, 396
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 2 cut(s) 470, 572
BmeRI GACNNNNNGTC 1 cut(s) 351
BmeT110I CYCGRG 1 cut(s) 179
BmiI GGNNCC 3 cut(s) 248, 542, 567
BmrFI CCNGG 2 cut(s) 470, 572
BmsI GCATC 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 197
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BpmI CTGGAG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 572
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 185, 570
BsaWI WCCGGW 2 cut(s) 79, 562
BsaXI ACNNNNNCTCC 4 cut(s) 116, 146, 197, 227
Bsc4I CCNNNNNNNGG 6 cut(s) 71, 186, 390, 469, 550, 577
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 352
Bse3DI GCAATG 2 cut(s) 439, 561
Bse8I GATNNNNATC 1 cut(s) 117
BseBI CCWGG 1 cut(s) 470
BseDI CCNNGG 2 cut(s) 185, 570
BseGI GGATG 1 cut(s) 521
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 6 cut(s) 71, 186, 390, 469, 550, 577
BseMI GCAATG 2 cut(s) 439, 561
BseNI ACTGG 1 cut(s) 352
BseSI GKGCMC 2 cut(s) 251, 570
BseXI GCAGC 3 cut(s) 43, 218, 406
BsgI GTGCAG 1 cut(s) 217
Bsh1236I CGCG 1 cut(s) 495
BshFI GGCC 2 cut(s) 198, 267
BshNI GGYRCC 2 cut(s) 246, 565
BsiHKAI GWGCWC 1 cut(s) 322
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 4 cut(s) 80, 195, 563, 572
BsiWI CGTACG 1 cut(s) 24
BslI CCNNNNNNNGG 6 cut(s) 71, 186, 390, 469, 550, 577
BsnI GGCC 2 cut(s) 198, 267
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 6 cut(s) 178, 251, 296, 322, 419, 570
Bsp143I GATC 4 cut(s) 112, 118, 217, 598
BspACI CCGC 5 cut(s) 143, 152, 166, 379, 495
BspANI GGCC 2 cut(s) 198, 267
BspFNI CGCG 1 cut(s) 495
BspHI TCATGA 3 cut(s) 106, 115, 121
BspLI GGNNCC 3 cut(s) 248, 542, 567
BspPI GGATC 1 cut(s) 212
BspT107I GGYRCC 2 cut(s) 246, 565
BsrBI CCGCTC 1 cut(s) 381
BsrDI GCAATG 2 cut(s) 439, 561
BsrFI RCCGGY 1 cut(s) 194
BsrI ACTGG 1 cut(s) 352
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 2 cut(s) 185, 570
BssMI GATC 4 cut(s) 112, 118, 217, 598
Bst2UI CCWGG 1 cut(s) 470
Bst4CI ACNGT 2 cut(s) 479, 545
BstC8I GCNNGC 1 cut(s) 147
BstDSI CCRYGG 1 cut(s) 185
BstENI CCTNNNNNAGG 1 cut(s) 467
BstF5I GGATG 1 cut(s) 521
BstFNI CGCG 1 cut(s) 495
BstHHI GCGC 1 cut(s) 461
BstKTI GATC 4 cut(s) 115, 121, 220, 601
BstMBI GATC 4 cut(s) 112, 118, 217, 598
BstMWI GCNNNNNNNGC 5 cut(s) 151, 317, 378, 456, 465
BstNI CCWGG 1 cut(s) 470
BstSCI CCNGG 2 cut(s) 468, 570
BstSLI GKGCMC 2 cut(s) 251, 570
BstUI CGCG 1 cut(s) 495
BstV1I GCAGC 3 cut(s) 43, 218, 406
BstV2I GAAGAC 1 cut(s) 197
BsuRI GGCC 2 cut(s) 198, 267
BtgI CCRYGG 1 cut(s) 185
BtsCI GGATG 1 cut(s) 521
Cac8I GCNNGC 1 cut(s) 147
CciI TCATGA 3 cut(s) 106, 115, 121
CfoI GCGC 1 cut(s) 461
Cfr10I RCCGGY 1 cut(s) 194
Csp6I GTAC 5 cut(s) 4, 25, 400, 454, 475
CviAII CATG 8 cut(s) 107, 116, 122, 369, 505, 521, 577, 589
CviQI GTAC 5 cut(s) 4, 25, 400, 454, 475
DpnI GATC 4 cut(s) 114, 120, 219, 600
DpnII GATC 4 cut(s) 112, 118, 217, 598
DriI GACNNNNNGTC 1 cut(s) 351
EaeI YGGCCR 1 cut(s) 265
Eam1105I GACNNNNNGTC 1 cut(s) 351
EciI GGCGGA 2 cut(s) 141, 155
Eco24I GRGCYC 3 cut(s) 178, 296, 419
Eco88I CYCGRG 1 cut(s) 179
EcoNI CCTNNNNNAGG 1 cut(s) 467
EcoRI GAATTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 468
EcoT38I GRGCYC 3 cut(s) 178, 296, 419
FaeI CATG 8 cut(s) 110, 119, 125, 372, 508, 524, 580, 592
FatI CATG 8 cut(s) 106, 115, 121, 368, 504, 520, 576, 588
FbaI TGATCA 2 cut(s) 112, 118
Fnu4HI GCNGC 4 cut(s) 57, 143, 232, 395
FokI GGATG 1 cut(s) 528
FriOI GRGCYC 3 cut(s) 178, 296, 419
Fsp4HI GCNGC 4 cut(s) 57, 143, 232, 395
FspBI CTAG 1 cut(s) 171
GlaI GCGC 1 cut(s) 460
GluI GCNGC 4 cut(s) 57, 143, 232, 395
GsuI CTGGAG 1 cut(s) 73
HaeIII GGCC 2 cut(s) 198, 267
HapII CCGG 4 cut(s) 80, 195, 563, 572
HhaI GCGC 1 cut(s) 461
Hin1II CATG 8 cut(s) 110, 119, 125, 372, 508, 524, 580, 592
Hin6I GCGC 1 cut(s) 459
HinP1I GCGC 1 cut(s) 459
HinfI GANTC 3 cut(s) 41, 559, 592
HpaII CCGG 4 cut(s) 80, 195, 563, 572
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 1 cut(s) 402
Hpy188I TCNGA 4 cut(s) 40, 217, 333, 515
Hpy188III TCNNGA 5 cut(s) 107, 116, 122, 407, 596
Hpy8I GTNNAC 1 cut(s) 402
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 578
HpyCH4III ACNGT 2 cut(s) 479, 545
HpyCH4V TGCA 3 cut(s) 234, 275, 311
HpyF10VI GCNNNNNNNGC 5 cut(s) 151, 317, 378, 456, 465
Hsp92II CATG 8 cut(s) 110, 119, 125, 372, 508, 524, 580, 592
HspAI GCGC 1 cut(s) 459
Ksp22I TGATCA 2 cut(s) 112, 118
Kzo9I GATC 4 cut(s) 112, 118, 217, 598
LmnI GCTCC 5 cut(s) 92, 137, 154, 317, 386
Lsp1109I GCAGC 3 cut(s) 43, 218, 406
LweI GCATC 1 cut(s) 43
MaeI CTAG 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 343
MalI GATC 4 cut(s) 114, 120, 219, 600
MbiI CCGCTC 1 cut(s) 381
MboI GATC 4 cut(s) 112, 118, 217, 598
MboII GAAGA 1 cut(s) 202
MhlI GDGCHC 6 cut(s) 178, 251, 296, 322, 419, 570
MluCI AATT 1 cut(s) 19
MlyI GAGTC 2 cut(s) 50, 601
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 6 cut(s) 173, 209, 221, 384, 526, 574
MslI CAYNNNNRTG 2 cut(s) 120, 244
MspI CCGG 4 cut(s) 80, 195, 563, 572
MspR9I CCNGG 2 cut(s) 470, 572
MvaI CCWGG 1 cut(s) 470
MvnI CGCG 1 cut(s) 495
MwoI GCNNNNNNNGC 5 cut(s) 151, 317, 378, 456, 465
NciI CCSGG 1 cut(s) 572
NdeII GATC 4 cut(s) 112, 118, 217, 598
NlaIII CATG 8 cut(s) 110, 119, 125, 372, 508, 524, 580, 592
NlaIV GGNNCC 3 cut(s) 248, 542, 567
NmuCI GTSAC 1 cut(s) 343
PagI TCATGA 3 cut(s) 106, 115, 121
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PfeI GAWTC 1 cut(s) 559
Pfl23II CGTACG 1 cut(s) 24
PkrI GCNGC 4 cut(s) 58, 144, 233, 396
PleI GAGTC 2 cut(s) 49, 600
PpsI GAGTC 2 cut(s) 49, 600
Psp6I CCWGG 1 cut(s) 468
PspGI CCWGG 1 cut(s) 468
PspLI CGTACG 1 cut(s) 24
PspN4I GGNNCC 3 cut(s) 248, 542, 567
PsrI GAACNNNNNNTAC 2 cut(s) 17, 49
RsaI GTAC 5 cut(s) 5, 26, 401, 455, 476
RsaNI GTAC 5 cut(s) 4, 25, 400, 454, 475
RseI CAYNNNNRTG 2 cut(s) 120, 244
SatI GCNGC 4 cut(s) 57, 143, 232, 395
Sau3AI GATC 4 cut(s) 112, 118, 217, 598
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 2 cut(s) 50, 601
ScrFI CCNGG 2 cut(s) 470, 572
SduI GDGCHC 6 cut(s) 178, 251, 296, 322, 419, 570
SetI ASST 4 cut(s) 89, 134, 165, 486
SfaNI GCATC 1 cut(s) 43
SmiMI CAYNNNNRTG 2 cut(s) 120, 244
Sse9I AATT 1 cut(s) 19
SsiI CCGC 5 cut(s) 143, 152, 166, 379, 495
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 468, 570
TaaI ACNGT 2 cut(s) 479, 545
TaqI TCGA 3 cut(s) 501, 531, 595
TasI AATT 1 cut(s) 19
TatI WGTACW 3 cut(s) 3, 399, 453
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 1 cut(s) 559
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 3 cut(s) 56, 231, 394
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 3 cut(s) 357, 428, 572
XagI CCTNNNNNAGG 1 cut(s) 467
XapI RAATTY 1 cut(s) 19
XspI CTAG 1 cut(s) 171
ZrmI AGTACT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.