RLG00000029321

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0008185
Physical Location & Seq
Forward (+)
36482212 .. 36483789
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029321

Sequence Viewer

Length: 837 bp
ATGTCGCTCCCAAAACCTAGCCGCCTGTGCTCGGTGATCCAAACATGGCAACCGCTGTTGGTCTCCATCCTAAGTGGAGAAACCCGCTCCACCTCCCACAATCCAATCTCAACCTTCCAACGCTGGTTTTTCCGAGCGCCCACCCAACAACATGAAGGTTCTGCAACTTTCAGGGTTTCTGCTCCTTGCTGGATTGAGTTCGGTCCAGACCACGGCAGATCTCCAGGGGTGAGCCTCATGCGCTTTTCTCCAAGCGGCAGTGGTGATTCAGGTCTCCGTTCTGTCAAACTTTGGGATCTGCAGAAGGTGGTGAAATCGGTGATTCATCGCCTAAGCAAGCATATCGAGGATGATGAGTTTGCTGAGATTAGACGGACTCGACCGCATCGGGGACGTCTGAAATTCAGAATTCTTGGTGTTTCTCGGTGTTGGATACCTATGCTAAAGGGGGGCGACATGTCTCAGGATCCGAGGTGGAGGCGAGATTGTCTGCATCTCACATGTGCGGCGGCGATGGTGGCTGCGACGGAGATGGTGTCCGCAAGAGTGGGTGCGCCCAATCTGGGTTGGGTGCCCAGAGCATTATTGAGTGATAGGTTTTCCACCAGTTTTCACCTTCTCCACCCTCCCATGTGGGAGTGGCAGAGAAGCTCTAAGTACGCAATCACAGATATTCGAACTGGAGGATCGTTCGTATATGCTATATGTCATACAGAAGGCCTTTCAAGTGACTTCATCGGAAATCTATTCTTTGTTGCTCTAGTGCCTCCCCCAGCTATACTTCAAAATTTATCAGCCAGAGCTTTGTTTTCATTATTAATTGTCTCAAGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

279

Amino Acids

31.2

Weight (kDa)

10.04

Isoelectric Point (pI)

59.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 397
AccB1I GGYRCC 1 cut(s) 571
AccBSI CCGCTC 1 cut(s) 87
AciI CCGC 8 cut(s) 22, 53, 85, 255, 383, 506, 509, 540
AclWI GGATC 5 cut(s) 31, 303, 461, 474, 694
AcsI RAATTY 3 cut(s) 401, 408, 787
AcyI GRCGYC 1 cut(s) 394
AfaI GTAC 1 cut(s) 659
AfiI CCNNNNNNNGG 4 cut(s) 31, 212, 389, 563
AflIII ACRYGT 2 cut(s) 456, 500
AgsI TTSAA 2 cut(s) 726, 785
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 3 cut(s) 651, 776, 803
AluI AGCT 3 cut(s) 651, 776, 803
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 4 cut(s) 67, 278, 465, 829
AlwI GGATC 5 cut(s) 31, 303, 461, 474, 694
AoxI GGCC 1 cut(s) 718
ApeKI GCWGC 1 cut(s) 521
ApoI RAATTY 3 cut(s) 401, 408, 787
AseI ATTAAT 1 cut(s) 818
AspLEI GCGC 3 cut(s) 139, 243, 556
AspS9I GGNCC 1 cut(s) 203
AsuHPI GGTGA 6 cut(s) 46, 241, 275, 322, 331, 605
AsuII TTCGAA 1 cut(s) 676
AvaII GGWCC 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 576
BamHI GGATCC 1 cut(s) 466
BanI GGYRCC 1 cut(s) 571
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 508
BccI CCATC 3 cut(s) 74, 508, 526
BceAI ACGGC 1 cut(s) 229
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BciT130I CCWGG 1 cut(s) 225
BciVI GTATCC 1 cut(s) 426
BcoDI GTCTC 4 cut(s) 67, 278, 465, 829
BfaI CTAG 2 cut(s) 18, 761
BfmI CTRYAG 1 cut(s) 299
BfoI RGCGCY 1 cut(s) 140
BfuI GTATCC 1 cut(s) 426
BglII AGATCT 1 cut(s) 218
BisI GCNGC 5 cut(s) 22, 256, 507, 510, 522
BlsI GCNGC 5 cut(s) 23, 257, 508, 511, 523
Bme1390I CCNGG 1 cut(s) 225
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 2 cut(s) 468, 573
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 2 cut(s) 394, 502
BpmI CTGGAG 2 cut(s) 207, 702
Bpu10I CCTNAGC 1 cut(s) 332
Bpu14I TTCGAA 1 cut(s) 676
BpuEI CTTGAG 1 cut(s) 811
BsaHI GRCGYC 1 cut(s) 394
BsaI GGTCTC 2 cut(s) 67, 278
BsaJI CCNNGG 3 cut(s) 211, 224, 470
BsaXI ACNNNNNCTCC 2 cut(s) 521, 551
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 212, 389, 563
Bse1I ACTGG 2 cut(s) 606, 685
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 3 cut(s) 211, 224, 470
BseGI GGATG 2 cut(s) 66, 355
BseLI CCNNNNNNNGG 4 cut(s) 31, 212, 389, 563
BseMII CTCAG 2 cut(s) 354, 476
BseNI ACTGG 2 cut(s) 606, 685
BseSI GKGCMC 1 cut(s) 576
BseXI GCAGC 1 cut(s) 508
BseYI CCCAGC 1 cut(s) 772
Bsh1285I CGRYCG 1 cut(s) 383
BshFI GGCC 1 cut(s) 720
BshNI GGYRCC 1 cut(s) 571
BsiEI CGRYCG 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 32
BslFI GGGAC 1 cut(s) 405
BslI CCNNNNNNNGG 4 cut(s) 31, 212, 389, 563
BsmAI GTCTC 4 cut(s) 67, 278, 465, 829
BsmFI GGGAC 1 cut(s) 405
BsnI GGCC 1 cut(s) 720
Bso31I GGTCTC 2 cut(s) 67, 278
Bsp119I TTCGAA 1 cut(s) 676
Bsp1286I GDGCHC 2 cut(s) 32, 576
Bsp143I GATC 5 cut(s) 36, 218, 295, 466, 686
BspACI CCGC 8 cut(s) 22, 53, 85, 255, 383, 506, 509, 540
BspANI GGCC 1 cut(s) 720
BspCNI CTCAG 2 cut(s) 355, 475
BspLI GGNNCC 2 cut(s) 468, 573
BspMAI CTGCAG 1 cut(s) 303
BspPI GGATC 5 cut(s) 31, 303, 461, 474, 694
BspT104I TTCGAA 1 cut(s) 676
BspT107I GGYRCC 1 cut(s) 571
BspTNI GGTCTC 2 cut(s) 67, 278
BsrBI CCGCTC 1 cut(s) 87
BsrI ACTGG 2 cut(s) 606, 685
BssECI CCNNGG 3 cut(s) 211, 224, 470
BssMI GATC 5 cut(s) 36, 218, 295, 466, 686
BssNI GRCGYC 1 cut(s) 394
Bst2UI CCWGG 1 cut(s) 225
BstACI GRCGYC 1 cut(s) 394
BstBI TTCGAA 1 cut(s) 676
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 5 cut(s) 71, 332, 363, 462, 654
BstDSI CCRYGG 1 cut(s) 211
BstF5I GGATG 2 cut(s) 66, 355
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 3 cut(s) 139, 243, 556
BstKTI GATC 5 cut(s) 39, 221, 298, 469, 689
BstMAI GTCTC 4 cut(s) 67, 278, 465, 829
BstMBI GATC 5 cut(s) 36, 218, 295, 466, 686
BstMCI CGRYCG 1 cut(s) 383
BstMWI GCNNNNNNNGC 3 cut(s) 27, 240, 518
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 2 cut(s) 460, 504
BstSCI CCNGG 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 299
BstSLI GKGCMC 1 cut(s) 576
BstV1I GCAGC 1 cut(s) 508
BstX2I RGATCY 3 cut(s) 218, 295, 466
BstYI RGATCY 3 cut(s) 218, 295, 466
BsuI GTATCC 1 cut(s) 426
BsuRI GGCC 1 cut(s) 720
BtgI CCRYGG 1 cut(s) 211
BtgZI GCGATG 2 cut(s) 311, 527
BtsCI GGATG 2 cut(s) 66, 355
BtsI GCAGTG 1 cut(s) 265
BtsIMutI CAGTG 1 cut(s) 265
Cac8I GCNNGC 1 cut(s) 338
CfoI GCGC 3 cut(s) 139, 243, 556
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 658
CviAII CATG 6 cut(s) 45, 152, 238, 457, 501, 631
CviJI RGCY 8 cut(s) 21, 234, 521, 651, 720, 776, 797, 803
CviKI_1 RGCY 8 cut(s) 21, 234, 521, 651, 720, 776, 797, 803
CviQI GTAC 1 cut(s) 658
DdeI CTNAG 5 cut(s) 71, 332, 363, 462, 654
DpnI GATC 5 cut(s) 38, 220, 297, 468, 688
DpnII GATC 5 cut(s) 36, 218, 295, 466, 686
Eco147I AGGCCT 1 cut(s) 720
Eco31I GGTCTC 2 cut(s) 67, 278
Eco47I GGWCC 1 cut(s) 203
EcoRI GAATTC 1 cut(s) 408
EcoRII CCWGG 1 cut(s) 223
FaeI CATG 6 cut(s) 48, 155, 241, 460, 504, 634
FaqI GGGAC 1 cut(s) 405
FatI CATG 6 cut(s) 44, 151, 237, 456, 500, 630
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 5 cut(s) 22, 256, 507, 510, 522
FokI GGATG 2 cut(s) 53, 362
Fsp4HI GCNGC 5 cut(s) 22, 256, 507, 510, 522
FspBI CTAG 2 cut(s) 18, 761
GlaI GCGC 3 cut(s) 138, 242, 555
GluI GCNGC 5 cut(s) 22, 256, 507, 510, 522
GsaI CCCAGC 1 cut(s) 776
GsuI CTGGAG 2 cut(s) 207, 702
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 1 cut(s) 720
HhaI GCGC 3 cut(s) 139, 243, 556
Hin1I GRCGYC 1 cut(s) 394
Hin1II CATG 6 cut(s) 48, 155, 241, 460, 504, 634
Hin6I GCGC 3 cut(s) 137, 241, 554
HinP1I GCGC 3 cut(s) 137, 241, 554
HinfI GANTC 3 cut(s) 266, 322, 376
HphI GGTGA 6 cut(s) 46, 241, 275, 322, 331, 605
Hpy188I TCNGA 5 cut(s) 134, 399, 407, 471, 740
Hpy188III TCNNGA 2 cut(s) 206, 464
Hpy99I CGWCG 1 cut(s) 529
HpyAV CCTTC 5 cut(s) 124, 149, 298, 626, 710
HpyCH4IV ACGT 1 cut(s) 394
HpyCH4V TGCA 3 cut(s) 164, 301, 493
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 240, 518
HpyF3I CTNAG 5 cut(s) 71, 332, 363, 462, 654
HpySE526I ACGT 1 cut(s) 394
Hsp92I GRCGYC 1 cut(s) 394
Hsp92II CATG 6 cut(s) 48, 155, 241, 460, 504, 634
HspAI GCGC 3 cut(s) 137, 241, 554
Kzo9I GATC 5 cut(s) 36, 218, 295, 466, 686
LmnI GCTCC 3 cut(s) 12, 92, 187
Lsp1109I GCAGC 1 cut(s) 508
LweI GCATC 2 cut(s) 394, 502
MaeI CTAG 2 cut(s) 18, 761
MaeII ACGT 1 cut(s) 394
MaeIII GTNAC 1 cut(s) 728
MalI GATC 5 cut(s) 38, 220, 297, 468, 688
MbiI CCGCTC 1 cut(s) 87
MboI GATC 5 cut(s) 36, 218, 295, 466, 686
MflI RGATCY 3 cut(s) 218, 295, 466
MhlI GDGCHC 2 cut(s) 32, 576
MluCI AATT 4 cut(s) 401, 408, 787, 819
MlyI GAGTC 1 cut(s) 370
MmeI TCCRAC 2 cut(s) 142, 410
MnlI CCTC 8 cut(s) 103, 245, 340, 465, 471, 636, 677, 777
MseI TTAA 2 cut(s) 818, 835
MspA1I CMGCKG 1 cut(s) 55
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
MwoI GCNNNNNNNGC 3 cut(s) 27, 240, 518
NdeII GATC 5 cut(s) 36, 218, 295, 466, 686
NlaIII CATG 6 cut(s) 48, 155, 241, 460, 504, 634
NlaIV GGNNCC 2 cut(s) 468, 573
NmuCI GTSAC 1 cut(s) 728
NspI RCATGY 2 cut(s) 460, 504
NspV TTCGAA 1 cut(s) 676
PceI AGGCCT 1 cut(s) 720
PciI ACATGT 2 cut(s) 456, 500
PfeI GAWTC 2 cut(s) 266, 322
PkrI GCNGC 5 cut(s) 23, 257, 508, 511, 523
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PscI ACATGT 2 cut(s) 456, 500
PshBI ATTAAT 1 cut(s) 818
Psp6I CCWGG 1 cut(s) 223
PspFI CCCAGC 1 cut(s) 772
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 2 cut(s) 468, 573
PspPI GGNCC 1 cut(s) 203
PstI CTGCAG 1 cut(s) 303
PsuI RGATCY 3 cut(s) 218, 295, 466
RsaI GTAC 1 cut(s) 659
RsaNI GTAC 1 cut(s) 658
SaqAI TTAA 2 cut(s) 818, 835
SatI GCNGC 5 cut(s) 22, 256, 507, 510, 522
Sau3AI GATC 5 cut(s) 36, 218, 295, 466, 686
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 1 cut(s) 370
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 2 cut(s) 32, 576
SfaNI GCATC 2 cut(s) 394, 502
SfcI CTRYAG 1 cut(s) 299
SfuI TTCGAA 1 cut(s) 676
SinI GGWCC 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 826
SmoI CTYRAG 1 cut(s) 826
Sse9I AATT 4 cut(s) 401, 408, 787, 819
SseBI AGGCCT 1 cut(s) 720
SsiI CCGC 8 cut(s) 22, 53, 85, 255, 383, 506, 509, 540
SspMI CTAG 2 cut(s) 18, 761
StuI AGGCCT 1 cut(s) 720
StyD4I CCNGG 1 cut(s) 223
TaiI ACGT 1 cut(s) 397
TaqI TCGA 3 cut(s) 345, 379, 676
TaqII GACCGA 1 cut(s) 191
TasI AATT 4 cut(s) 401, 408, 787, 819
TauI GCSGC 4 cut(s) 24, 258, 509, 512
TfiI GAWTC 2 cut(s) 266, 322
Tru1I TTAA 2 cut(s) 818, 835
Tru9I TTAA 2 cut(s) 818, 835
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 728
TseI GCWGC 1 cut(s) 521
Tsp45I GTSAC 1 cut(s) 728
TspDTI ATGAA 4 cut(s) 168, 314, 724, 801
TspGWI ACGGA 3 cut(s) 266, 388, 542
TspRI CASTG 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 203
VspI ATTAAT 1 cut(s) 818
XapI RAATTY 3 cut(s) 401, 408, 787
XceI RCATGY 2 cut(s) 460, 504
XspI CTAG 2 cut(s) 18, 761
ZraI GACGTC 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.