Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008185

Physical Location & Seq

Genomic Coordinates Forward (+)

34162423 .. 34169879

Gene Structure 7457 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029183

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTCGCTCCCAAAACCTAGCCGCCTGTGCTCGGTGATCCAAACATGGCGACTGCTGCCGTTCTCCCTTCTAAGTGGAGAAATCCACTCCACATCCCACAATCCAATCTCAGACCTCCAATCTTGGTCGGCGACCAACCCACAAAATGAAGGTTATGCGACTTTCAGGGTTTCTGACCCGTGCCGATTTGGGTTTGATCCAGATCGCGGCGGACCTCCAGAGGCGAGCCTCGGGCGCTATCCTTCAAGAGGCAGTGGTGGCTTGCTCTTCGAAGCAAGTAGATCTCTTGCTTCGAATCTCCAATCTACTTCATGTGGAGGGAGGCATGACCTTACAGAGAGCTTGAAGAGTTTGCAGTGCAATCTTATTTTTGTGGGTGAAAATAGTCCATTCGGTGTTGAATCTGTGTATATGAATGCGAGAATGGACATGTTGAGGTTCAGTCGTGTGGCTCGCTGTAGCAGGAGCACCCAAACGCCATGCTTACTCCAATCGAATTCTTCCTCATGGGATTTGGCCACTACAGGCAACCACATTTTGCGTCCTTGCCAAGTAATGACTCGGACCCTACAAGCCCCTCGAGCTGTTTATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ndr

Protein Analysis

199

Amino Acids

21.77

Weight (kDa)

8.99

Isoelectric Point (pI)

62.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008185)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000016386 RLG00000019388 RLG00000023749 RLG00000025324 RLG00000029183 RLG00000029321
rosa_multiflora	Rmu_sc0000674.1_g000016 Rmu_sc0005706.1_g000007 Rmu_ssc0000421.1_g000059
rosa_roxburghii	Rroxscaffold_158G00443760 Rroxscaffold_4G00310830
rosa_rugosa	Rorug01G0064200 Rorug04G0428800
rosa_samantha	Rh1CG371300 Rh1DG388700 Rh2AG237800 Rh2DG245300 Rh4CG156000 Rh4DG117200 Rh6AG473200 Rh6BG089600 Rh6BG320100 Rh6DG336000 Rh7DG021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	207
AciI	CCGC	3 cut(s)	22, 207, 210
AclWI	GGATC	2 cut(s)	31, 191
AcoI	YGGCCR	1 cut(s)	516
AcsI	RAATTY	1 cut(s)	496
AfiI	CCNNNNNNNGG	3 cut(s)	31, 206, 248
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	3 cut(s)	246, 346, 401
AluBI	AGCT	2 cut(s)	342, 584
AluI	AGCT	2 cut(s)	342, 584
Alw21I	GWGCWC	2 cut(s)	32, 470
AlwI	GGATC	2 cut(s)	31, 191
Ama87I	CYCGRG	2 cut(s)	230, 579
AoxI	GGCC	1 cut(s)	516
ApeKI	GCWGC	1 cut(s)	55
ApoI	RAATTY	1 cut(s)	496
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	2 cut(s)	212, 564
AsuHPI	GGTGA	2 cut(s)	46, 389
AsuII	TTCGAA	2 cut(s)	270, 293
AvaI	CYCGRG	2 cut(s)	230, 579
AvaII	GGWCC	2 cut(s)	212, 564
BalI	TGGCCA	1 cut(s)	518
Bbv12I	GWGCWC	2 cut(s)	32, 470
BbvI	GCAGC	1 cut(s)	42
BceAI	ACGGC	1 cut(s)	43
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	2 cut(s)	457, 522
BfoI	RGCGCY	1 cut(s)	238
BglII	AGATCT	1 cut(s)	281
BisI	GCNGC	3 cut(s)	22, 56, 208
BlsI	GCNGC	3 cut(s)	23, 57, 209
Bme18I	GGWCC	2 cut(s)	212, 564
BmeT110I	CYCGRG	2 cut(s)	230, 579
BmgT120I	GGNCC	2 cut(s)	212, 564
BmiI	GGNNCC	1 cut(s)	566
BpmI	CTGGAG	1 cut(s)	201
Bpu14I	TTCGAA	2 cut(s)	270, 293
BsaBI	GATNNNNATC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 206, 248
Bse8I	GATNNNNATC	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	1 cut(s)	92
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	3 cut(s)	31, 206, 248
BseMII	CTCAG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	42
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	518
BsiHKAI	GWGCWC	2 cut(s)	32, 470
BsiHKCI	CYCGRG	2 cut(s)	230, 579
BslI	CCNNNNNNNGG	3 cut(s)	31, 206, 248
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	1 cut(s)	518
BsoBI	CYCGRG	2 cut(s)	230, 579
Bsp119I	TTCGAA	2 cut(s)	270, 293
Bsp1286I	GDGCHC	2 cut(s)	32, 470
Bsp143I	GATC	4 cut(s)	36, 196, 202, 281
BspACI	CCGC	3 cut(s)	22, 207, 210
BspANI	GGCC	1 cut(s)	518
BspCNI	CTCAG	1 cut(s)	122
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	566
BspPI	GGATC	2 cut(s)	31, 191
BspQI	GCTCTTC	1 cut(s)	272
BspT104I	TTCGAA	2 cut(s)	270, 293
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	4 cut(s)	36, 196, 202, 281
Bst6I	CTCTTC	2 cut(s)	272, 341
BstBI	TTCGAA	2 cut(s)	270, 293
BstC8I	GCNNGC	3 cut(s)	226, 263, 454
BstDEI	CTNAG	2 cut(s)	71, 109
BstENI	CCTNNNNNAGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	92
BstFNI	CGCG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	4 cut(s)	39, 199, 205, 284
BstMBI	GATC	4 cut(s)	36, 196, 202, 281
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 55, 234, 258, 581
BstNSI	RCATGY	1 cut(s)	433
BstSFI	CTRYAG	2 cut(s)	457, 522
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	518
BtsCI	GGATG	1 cut(s)	92
BtsI	GCAGTG	2 cut(s)	259, 362
BtsIMutI	CAGTG	2 cut(s)	259, 362
Cac8I	GCNNGC	3 cut(s)	226, 263, 454
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	2 cut(s)	212, 564
CseI	GACGC	1 cut(s)	530
CviAII	CATG	6 cut(s)	45, 312, 326, 430, 480, 507
CviJI	RGCY	8 cut(s)	21, 228, 261, 342, 452, 518, 575, 584
CviKI_1	RGCY	8 cut(s)	21, 228, 261, 342, 452, 518, 575, 584
DdeI	CTNAG	2 cut(s)	71, 109
DpnI	GATC	4 cut(s)	38, 198, 204, 283
DpnII	GATC	4 cut(s)	36, 196, 202, 281
EaeI	YGGCCR	1 cut(s)	516
Eam1104I	CTCTTC	2 cut(s)	272, 341
EarI	CTCTTC	2 cut(s)	272, 341
EciI	GGCGGA	1 cut(s)	225
Eco47I	GGWCC	2 cut(s)	212, 564
Eco88I	CYCGRG	2 cut(s)	230, 579
EcoNI	CCTNNNNNAGG	1 cut(s)	246
EcoRI	GAATTC	1 cut(s)	496
FaeI	CATG	6 cut(s)	48, 315, 329, 433, 483, 510
FatI	CATG	6 cut(s)	44, 311, 325, 429, 479, 506
Fnu4HI	GCNGC	3 cut(s)	22, 56, 208
FokI	GGATG	1 cut(s)	79
Fsp4HI	GCNGC	3 cut(s)	22, 56, 208
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	3 cut(s)	22, 56, 208
GsuI	CTGGAG	1 cut(s)	201
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	1 cut(s)	518
HgaI	GACGC	1 cut(s)	530
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	6 cut(s)	48, 315, 329, 433, 483, 510
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HinfI	GANTC	3 cut(s)	295, 401, 559
HphI	GGTGA	2 cut(s)	46, 389
Hpy188I	TCNGA	3 cut(s)	112, 175, 564
Hpy188III	TCNNGA	3 cut(s)	200, 218, 246
HpyAV	CCTTC	3 cut(s)	77, 143, 252
HpyCH4V	TGCA	2 cut(s)	355, 360
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 55, 234, 258, 581
HpyF3I	CTNAG	2 cut(s)	71, 109
Hsp92II	CATG	6 cut(s)	48, 315, 329, 433, 483, 510
HspAI	GCGC	1 cut(s)	235
Kzo9I	GATC	4 cut(s)	36, 196, 202, 281
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	2 cut(s)	12, 465
LpnPI	CCDG	6 cut(s)	38, 151, 213, 231, 448, 510
Lsp1109I	GCAGC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	18
MalI	GATC	4 cut(s)	38, 198, 204, 283
MboI	GATC	4 cut(s)	36, 196, 202, 281
MboII	GAAGA	3 cut(s)	259, 358, 492
MflI	RGATCY	1 cut(s)	281
MhlI	GDGCHC	2 cut(s)	32, 470
MlsI	TGGCCA	1 cut(s)	518
MluCI	AATT	1 cut(s)	496
MluNI	TGGCCA	1 cut(s)	518
MlyI	GAGTC	1 cut(s)	553
Mox20I	TGGCCA	1 cut(s)	518
MscI	TGGCCA	1 cut(s)	518
Msp20I	TGGCCA	1 cut(s)	518
Mva1269I	GAATGC	1 cut(s)	421
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	5 cut(s)	27, 55, 234, 258, 581
NdeII	GATC	4 cut(s)	36, 196, 202, 281
NlaIII	CATG	6 cut(s)	48, 315, 329, 433, 483, 510
NlaIV	GGNNCC	1 cut(s)	566
NspI	RCATGY	1 cut(s)	433
NspV	TTCGAA	2 cut(s)	270, 293
PaeR7I	CTCGAG	1 cut(s)	579
PciI	ACATGT	1 cut(s)	429
PciSI	GCTCTTC	1 cut(s)	272
PctI	GAATGC	1 cut(s)	421
PfeI	GAWTC	2 cut(s)	295, 401
PkrI	GCNGC	3 cut(s)	23, 57, 209
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
PscI	ACATGT	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	566
PspPI	GGNCC	2 cut(s)	212, 564
PspXI	VCTCGAGB	1 cut(s)	579
PsuI	RGATCY	1 cut(s)	281
SapI	GCTCTTC	1 cut(s)	272
SatI	GCNGC	3 cut(s)	22, 56, 208
Sau3AI	GATC	4 cut(s)	36, 196, 202, 281
Sau96I	GGNCC	2 cut(s)	212, 564
SchI	GAGTC	1 cut(s)	553
SduI	GDGCHC	2 cut(s)	32, 470
SetI	ASST	8 cut(s)	19, 117, 154, 217, 333, 344, 440, 586
SfcI	CTRYAG	2 cut(s)	457, 522
Sfr274I	CTCGAG	1 cut(s)	579
SfuI	TTCGAA	2 cut(s)	270, 293
SinI	GGWCC	2 cut(s)	212, 564
SlaI	CTCGAG	1 cut(s)	579
SmlI	CTYRAG	1 cut(s)	579
SmoI	CTYRAG	1 cut(s)	579
Sse9I	AATT	1 cut(s)	496
SsiI	CCGC	3 cut(s)	22, 207, 210
SspMI	CTAG	1 cut(s)	18
TaqI	TCGA	4 cut(s)	270, 293, 494, 580
TasI	AATT	1 cut(s)	496
TauI	GCSGC	2 cut(s)	24, 210
TfiI	GAWTC	2 cut(s)	295, 401
TscAI	CASTG	2 cut(s)	259, 362
TseI	GCWGC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	162, 300, 428
TspRI	CASTG	2 cut(s)	259, 362
VpaK11BI	GGWCC	2 cut(s)	212, 564
XagI	CCTNNNNNAGG	1 cut(s)	246
XapI	RAATTY	1 cut(s)	496
XceI	RCATGY	1 cut(s)	433
XhoI	CTCGAG	1 cut(s)	579
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.