Rh4DG117200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0008185
Physical Location & Seq
Reverse (-)
18602594 .. 18602896
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG117200.1

Sequence Viewer

Length: 303 bp
ATGCTCGGTTATCCAAACATGGCGACTGCTGCCGGTCTCCATTCTTGTGGAGAAACACACTCCACATCCAATCTCAGCCCTCCAATCTTGGTCGGCGACCAACCAACAAAAAGAAGGTATGCAACATTCAAGGTTTCTGACCCGTGCCGGTTTGGGTTCGATTCGGATCTCGACGGACCTCCAGGGGTGAGCCTTGGGCGCTATCCTCCAAGAGGCAGTGGTGGCTTGCTCTTCAGAGCAAGTAGATCTCTTGTGTCGGATCTCCAGTCTACTTCATGTGGACGGTCAAGAAGCTTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.61

Weight (kDa)

9.35

Isoelectric Point (pI)

67.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 269
AclWI GGATC 2 cut(s) 174, 267
AcuI CTGAAG 1 cut(s) 217
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 1 cut(s) 130
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 1 cut(s) 294
AluI AGCT 1 cut(s) 294
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 2 cut(s) 174, 267
ApeKI GCWGC 1 cut(s) 29
AspLEI GCGC 1 cut(s) 201
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 199
AvaII GGWCC 1 cut(s) 176
BbvI GCAGC 1 cut(s) 16
BciT130I CCWGG 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 41
BfoI RGCGCY 1 cut(s) 202
BglII AGATCT 1 cut(s) 245
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 183
BpmI CTGGAG 2 cut(s) 165, 248
BsaBI GATNNNNATC 1 cut(s) 165
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 2 cut(s) 182, 193
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse118I RCCGGY 2 cut(s) 32, 147
Bse1I ACTGG 1 cut(s) 265
Bse8I GATNNNNATC 1 cut(s) 165
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 182, 193
BseGI GGATG 1 cut(s) 65
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 88
BseNI ACTGG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 16
BsiSI CCGG 2 cut(s) 33, 148
BslI CCNNNNNNNGG 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 41
Bso31I GGTCTC 1 cut(s) 41
Bsp143I GATC 3 cut(s) 166, 245, 259
BspCNI CTCAG 1 cut(s) 87
BspPI GGATC 2 cut(s) 174, 267
BspQI GCTCTTC 1 cut(s) 236
BspTNI GGTCTC 1 cut(s) 41
BsrFI RCCGGY 2 cut(s) 32, 147
BsrI ACTGG 1 cut(s) 265
BssAI RCCGGY 2 cut(s) 32, 147
BssECI CCNNGG 2 cut(s) 182, 193
BssMI GATC 3 cut(s) 166, 245, 259
BssT1I CCWWGG 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 285
Bst6I CTCTTC 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 1 cut(s) 74
BstENI CCTNNNNNAGG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 65
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 3 cut(s) 169, 248, 262
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 3 cut(s) 166, 245, 259
BstMWI GCNNNNNNNGC 3 cut(s) 29, 198, 222
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 3 cut(s) 166, 245, 259
BstXI CCANNNNNNTGG 1 cut(s) 47
BstYI RGATCY 3 cut(s) 166, 245, 259
BtsCI GGATG 1 cut(s) 65
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 227
CfoI GCGC 1 cut(s) 201
Cfr10I RCCGGY 2 cut(s) 32, 147
Cfr13I GGNCC 1 cut(s) 176
CviAII CATG 2 cut(s) 19, 276
CviJI RGCY 4 cut(s) 78, 192, 225, 294
CviKI_1 RGCY 4 cut(s) 78, 192, 225, 294
DdeI CTNAG 1 cut(s) 74
DpnI GATC 3 cut(s) 168, 247, 261
DpnII GATC 3 cut(s) 166, 245, 259
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 193
Eco31I GGTCTC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 176
Eco57I CTGAAG 1 cut(s) 217
EcoNI CCTNNNNNAGG 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 2 cut(s) 22, 279
FaiI YATR 3 cut(s) 20, 120, 277
FalI AAGNNNNNCTT 1 cut(s) 283
FatI CATG 2 cut(s) 18, 275
FblI GTMKAC 1 cut(s) 269
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 30
GlaI GCGC 1 cut(s) 200
GluI GCNGC 1 cut(s) 30
GsuI CTGGAG 2 cut(s) 165, 248
HaeII RGCGCY 1 cut(s) 202
HapII CCGG 2 cut(s) 33, 148
HhaI GCGC 1 cut(s) 201
Hin1II CATG 2 cut(s) 22, 279
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 292
HinfI GANTC 1 cut(s) 161
HpaII CCGG 2 cut(s) 33, 148
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 2 cut(s) 270, 281
Hpy188I TCNGA 4 cut(s) 139, 166, 236, 259
Hpy188III TCNNGA 3 cut(s) 170, 288, 300
Hpy8I GTNNAC 2 cut(s) 270, 281
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 108
HpyCH4III ACNGT 1 cut(s) 285
HpyCH4V TGCA 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 198, 222
HpyF3I CTNAG 1 cut(s) 74
Hsp92II CATG 2 cut(s) 22, 279
HspAI GCGC 1 cut(s) 199
Kzo9I GATC 3 cut(s) 166, 245, 259
LguI GCTCTTC 1 cut(s) 236
LpnPI CCDG 5 cut(s) 46, 161, 168, 195, 278
Lsp1109I GCAGC 1 cut(s) 16
MalI GATC 3 cut(s) 168, 247, 261
MboI GATC 3 cut(s) 166, 245, 259
MboII GAAGA 1 cut(s) 223
MflI RGATCY 3 cut(s) 166, 245, 259
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 4 cut(s) 90, 189, 206, 216
MslI CAYNNNNRTG 1 cut(s) 45
MspI CCGG 2 cut(s) 33, 148
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 3 cut(s) 29, 198, 222
NdeII GATC 3 cut(s) 166, 245, 259
NlaIII CATG 2 cut(s) 22, 279
PciSI GCTCTTC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspPI GGNCC 1 cut(s) 176
PsuI RGATCY 3 cut(s) 166, 245, 259
RseI CAYNNNNRTG 1 cut(s) 45
SapI GCTCTTC 1 cut(s) 236
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 3 cut(s) 166, 245, 259
Sau96I GGNCC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 183
SetI ASST 4 cut(s) 119, 135, 181, 296
SinI GGWCC 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 1 cut(s) 285
TaqI TCGA 2 cut(s) 159, 171
TfiI GAWTC 1 cut(s) 161
TscAI CASTG 1 cut(s) 223
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 264
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 176
XagI CCTNNNNNAGG 1 cut(s) 210
XmiI GTMKAC 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.