Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000421.1

Orthogroup ID

OG0008185

Physical Location & Seq

Genomic Coordinates Forward (+)

231049 .. 232167

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000421.1_g000059.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggggagggccgggacccggatccgattgatggcggcacgattctatgtgctccaatctgtgggaatggctgagatagtcgtcgtgcgtcgttttgaagatgccaatatgaaagaaagtcaggccttggtgaatgcagagcatgccggcaaggtgaccagaggtgagaagatggcggcatctgctgcgtttggcaagggtgcagcaaagtgggtgcccagatcatattggaagcccaaaaggattcgacggttcgcttttgaatatgtgagcactgattgtctaatgggtggtgctaccatgccacgtcctagacttgcccatagatggcaagggaaggaatttccaccaacaagcacgctcgatccaaaagtttatggtgatcagaccagtacaagaaccgaagaacacatcaagaataacttcaatgcactgacagtggagggggtaatatctttgattaatttcgttcgaaagatatttcatacacttgacatatccacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00591 map00591

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

168

Amino Acids

18.95

Weight (kDa)

10.27

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008185)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000016386 RLG00000019388 RLG00000023749 RLG00000025324 RLG00000029183 RLG00000029321
rosa_multiflora	Rmu_sc0000674.1_g000016 Rmu_sc0005706.1_g000007 Rmu_ssc0000421.1_g000059
rosa_roxburghii	Rroxscaffold_158G00443760 Rroxscaffold_4G00310830
rosa_rugosa	Rorug01G0064200 Rorug04G0428800
rosa_samantha	Rh1CG371300 Rh1DG388700 Rh2AG237800 Rh2DG245300 Rh4CG156000 Rh4DG117200 Rh6AG473200 Rh6BG089600 Rh6BG320100 Rh6DG336000 Rh7DG021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AccB7I	CCANNNNNTGG	1 cut(s)	61
AciI	CCGC	2 cut(s)	35, 176
AclWI	GGATC	3 cut(s)	16, 29, 359
AcsI	RAATTY	1 cut(s)	341
AfaI	GTAC	1 cut(s)	394
AfiI	CCNNNNNNNGG	4 cut(s)	18, 31, 61, 327
AgsI	TTSAA	3 cut(s)	98, 263, 427
AjiI	CACGTC	1 cut(s)	308
Alw21I	GWGCWC	2 cut(s)	54, 275
AlwI	GGATC	3 cut(s)	16, 29, 359
AoxI	GGCC	2 cut(s)	9, 123
ApeKI	GCWGC	2 cut(s)	185, 203
ApoI	RAATTY	1 cut(s)	341
AseI	ATTAAT	1 cut(s)	462
Asp700I	GAANNNNTTC	1 cut(s)	422
AspS9I	GGNCC	2 cut(s)	9, 15
AsuC2I	CCSGG	2 cut(s)	13, 19
AsuHPI	GGTGA	4 cut(s)	142, 166, 176, 392
AsuII	TTCGAA	1 cut(s)	472
AvaII	GGWCC	1 cut(s)	15
BaeGI	GKGCMC	1 cut(s)	219
BamHI	GGATCC	1 cut(s)	21
BanI	GGYRCC	1 cut(s)	214
Bbv12I	GWGCWC	2 cut(s)	54, 275
BbvI	GCAGC	2 cut(s)	172, 215
BccI	CCATC	3 cut(s)	25, 166, 321
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	2 cut(s)	13, 19
BfaI	CTAG	2 cut(s)	312, 505
BisI	GCNGC	4 cut(s)	36, 177, 186, 204
BlsI	GCNGC	4 cut(s)	37, 178, 187, 205
Bme1390I	CCNGG	2 cut(s)	13, 19
Bme18I	GGWCC	1 cut(s)	15
BmgBI	CACGTC	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	9, 15
BmiI	GGNNCC	4 cut(s)	16, 17, 23, 216
BmrFI	CCNGG	2 cut(s)	13, 19
BmsI	GCATC	2 cut(s)	91, 188
Bpu14I	TTCGAA	1 cut(s)	472
BpuMI	CCSGG	2 cut(s)	13, 19
BsaJI	CCNNGG	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 31, 61, 327
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	126
BseLI	CCNNNNNNNGG	4 cut(s)	18, 31, 61, 327
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	390
BseSI	GKGCMC	1 cut(s)	219
BseXI	GCAGC	2 cut(s)	172, 215
BsgI	GTGCAG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	11, 125
BshNI	GGYRCC	1 cut(s)	214
BsiHKAI	GWGCWC	2 cut(s)	54, 275
BsiSI	CCGG	3 cut(s)	12, 19, 147
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	4 cut(s)	18, 31, 61, 327
BsmFI	GGGAC	1 cut(s)	28
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	11, 125
Bsp119I	TTCGAA	1 cut(s)	472
Bsp1286I	GDGCHC	3 cut(s)	54, 219, 275
Bsp143I	GATC	4 cut(s)	21, 221, 364, 382
BspACI	CCGC	2 cut(s)	35, 176
BspANI	GGCC	2 cut(s)	11, 125
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	4 cut(s)	16, 17, 23, 216
BspPI	GGATC	3 cut(s)	16, 29, 359
BspT104I	TTCGAA	1 cut(s)	472
BspT107I	GGYRCC	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	390
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	4 cut(s)	21, 221, 364, 382
BssT1I	CCWWGG	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	252, 439
BstAPI	GCANNNNNTGC	2 cut(s)	143, 185
BstBI	TTCGAA	1 cut(s)	472
BstC8I	GCNNGC	3 cut(s)	144, 148, 359
BstDEI	CTNAG	1 cut(s)	72
BstEII	GGTNACC	1 cut(s)	154
BstKTI	GATC	4 cut(s)	24, 224, 367, 385
BstMBI	GATC	4 cut(s)	21, 221, 364, 382
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 182, 185
BstNSI	RCATGY	1 cut(s)	146
BstPI	GGTNACC	1 cut(s)	154
BstSCI	CCNGG	2 cut(s)	11, 17
BstSLI	GKGCMC	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	172, 215
BstX2I	RGATCY	1 cut(s)	21
BstYI	RGATCY	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	11, 125
BtrI	CACGTC	1 cut(s)	308
BtsIMutI	CAGTG	3 cut(s)	273, 431, 444
Cac8I	GCNNGC	3 cut(s)	144, 148, 359
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	9, 15
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	393
CviAII	CATG	2 cut(s)	143, 301
CviJI	RGCY	4 cut(s)	11, 71, 125, 235
CviKI_1	RGCY	4 cut(s)	11, 71, 125, 235
CviQI	GTAC	1 cut(s)	393
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	4 cut(s)	23, 223, 366, 384
DpnII	GATC	4 cut(s)	21, 221, 364, 382
Eco130I	CCWWGG	1 cut(s)	126
Eco147I	AGGCCT	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	15
Eco91I	GGTNACC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	15
EcoO65I	GGTNACC	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	2 cut(s)	146, 304
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	2 cut(s)	142, 300
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	4 cut(s)	36, 177, 186, 204
Fsp4HI	GCNGC	4 cut(s)	36, 177, 186, 204
FspBI	CTAG	2 cut(s)	312, 505
GluI	GCNGC	4 cut(s)	36, 177, 186, 204
HaeIII	GGCC	2 cut(s)	11, 125
HapII	CCGG	3 cut(s)	12, 19, 147
HgaI	GACGC	1 cut(s)	77
Hin1II	CATG	2 cut(s)	146, 304
HinfI	GANTC	2 cut(s)	42, 244
HpaII	CCGG	3 cut(s)	12, 19, 147
HphI	GGTGA	4 cut(s)	142, 166, 176, 392
Hpy188I	TCNGA	2 cut(s)	26, 387
Hpy188III	TCNNGA	1 cut(s)	415
Hpy99I	CGWCG	3 cut(s)	86, 93, 252
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	2 cut(s)	252, 439
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	3 cut(s)	137, 203, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 182, 185
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	2 cut(s)	146, 304
KflI	GGGWCCC	1 cut(s)	15
KroI	GCCGGC	1 cut(s)	146
KroNI	GCCGGC	1 cut(s)	148
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	4 cut(s)	21, 221, 364, 382
LmnI	GCTCC	1 cut(s)	57
LpnPI	CCDG	7 cut(s)	25, 32, 107, 160, 172, 232, 403
Lsp1109I	GCAGC	2 cut(s)	172, 215
LweI	GCATC	2 cut(s)	91, 188
MaeI	CTAG	2 cut(s)	312, 505
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	4 cut(s)	23, 223, 366, 384
MboI	GATC	4 cut(s)	21, 221, 364, 382
MboII	GAAGA	3 cut(s)	110, 181, 416
MflI	RGATCY	1 cut(s)	21
MhlI	GDGCHC	3 cut(s)	54, 219, 275
MluCI	AATT	2 cut(s)	341, 463
MnlI	CCTC	2 cut(s)	155, 436
MroNI	GCCGGC	1 cut(s)	146
MroXI	GAANNNNTTC	1 cut(s)	422
MseI	TTAA	1 cut(s)	462
MspI	CCGG	3 cut(s)	12, 19, 147
MspR9I	CCNGG	2 cut(s)	13, 19
Mva1269I	GAATGC	1 cut(s)	139
MwoI	GCNNNNNNNGC	3 cut(s)	143, 182, 185
NaeI	GCCGGC	1 cut(s)	148
NciI	CCSGG	2 cut(s)	13, 19
NdeII	GATC	4 cut(s)	21, 221, 364, 382
NgoMIV	GCCGGC	1 cut(s)	146
NlaIII	CATG	2 cut(s)	146, 304
NlaIV	GGNNCC	4 cut(s)	16, 17, 23, 216
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	146
NspV	TTCGAA	1 cut(s)	472
PaeI	GCATGC	1 cut(s)	146
PceI	AGGCCT	1 cut(s)	125
PctI	GAATGC	1 cut(s)	139
PdiI	GCCGGC	1 cut(s)	148
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	2 cut(s)	42, 244
PflMI	CCANNNNNTGG	1 cut(s)	61
PkrI	GCNGC	4 cut(s)	37, 178, 187, 205
PpuMI	RGGWCCY	1 cut(s)	15
PshBI	ATTAAT	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	15
PspEI	GGTNACC	1 cut(s)	154
PspN4I	GGNNCC	4 cut(s)	16, 17, 23, 216
PspPI	GGNCC	2 cut(s)	9, 15
PspPPI	RGGWCCY	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	21
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	4 cut(s)	36, 177, 186, 204
Sau3AI	GATC	4 cut(s)	21, 221, 364, 382
Sau96I	GGNCC	2 cut(s)	9, 15
ScrFI	CCNGG	2 cut(s)	13, 19
SduI	GDGCHC	3 cut(s)	54, 219, 275
SetI	ASST	4 cut(s)	156, 166, 310, 506
SfaNI	GCATC	2 cut(s)	91, 188
SfuI	TTCGAA	1 cut(s)	472
SinI	GGWCC	1 cut(s)	15
SphI	GCATGC	1 cut(s)	146
Sse9I	AATT	2 cut(s)	341, 463
SseBI	AGGCCT	1 cut(s)	125
SsiI	CCGC	2 cut(s)	35, 176
SspMI	CTAG	2 cut(s)	312, 505
StuI	AGGCCT	1 cut(s)	125
StyD4I	CCNGG	2 cut(s)	11, 17
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	252, 439
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	3 cut(s)	247, 363, 472
TasI	AATT	2 cut(s)	341, 463
TatI	WGTACW	1 cut(s)	392
TauI	GCSGC	2 cut(s)	38, 179
TfiI	GAWTC	2 cut(s)	42, 244
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	3 cut(s)	280, 438, 444
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	2 cut(s)	185, 203
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	2 cut(s)	125, 473
TspRI	CASTG	3 cut(s)	280, 438, 444
Van91I	CCANNNNNTGG	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	15
VspI	ATTAAT	1 cut(s)	462
XapI	RAATTY	1 cut(s)	341
XceI	RCATGY	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	422
XspI	CTAG	2 cut(s)	312, 505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.