Rh1DG388700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0008185
Physical Location & Seq
Reverse (-)
60785356 .. 60785694
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG388700.1

Sequence Viewer

Length: 339 bp
ATGGGAGACCTGATTCTGGAAGCGGCGGTGAGAGGCAGTGAAAATCATGGTGACCTGAGCGCCTCTGATGGCCGGCTGAGACAAGCTAGGTCAGAGGCAATGGCTGGGCCATTTGGTTCGGTGCACGCAGGCGAGGCGATGGTACTCGGATATGCAGATGGGGGCCGAGCGGCTGTGGGAAGCTTCATGCTCCATTTAATGATGGTTGCGGCGAGTGGCTCTGAGCATCGTCGTTTTTGTCACGACTCTGTTGCCCAAAGCTGGGCGGCTTGGGTCTATTATGCAGGTGAAGCAAGAGGCTCAGATTCTGCAGACGCCGGCGATGGGCGCCTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

11.67

Weight (kDa)

5.37

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 275
AccB1I GGYRCC 1 cut(s) 327
AccBSI CCGCTC 1 cut(s) 170
AciI CCGC 5 cut(s) 23, 26, 170, 209, 266
AcoI YGGCCR 1 cut(s) 70
AcyI GRCGYC 2 cut(s) 315, 328
AfaI GTAC 1 cut(s) 144
AfiI CCNNNNNNNGG 4 cut(s) 16, 261, 262, 324
AluBI AGCT 3 cut(s) 86, 183, 261
AluI AGCT 3 cut(s) 86, 183, 261
Alw21I GWGCWC 1 cut(s) 126
Alw26I GTCTC 1 cut(s) 73
Alw44I GTGCAC 1 cut(s) 122
AlwNI CAGNNNCTG 1 cut(s) 308
AoxI GGCC 3 cut(s) 70, 107, 163
ApaLI GTGCAC 1 cut(s) 122
AspLEI GCGC 2 cut(s) 62, 330
AspS9I GGNCC 2 cut(s) 107, 163
AsuHPI GGTGA 3 cut(s) 40, 62, 299
BaeGI GKGCMC 1 cut(s) 126
BanI GGYRCC 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 126
BccI CCATC 5 cut(s) 62, 133, 152, 196, 317
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 309
BfoI RGCGCY 2 cut(s) 63, 331
BfuAI ACCTGC 1 cut(s) 275
BisI GCNGC 4 cut(s) 24, 171, 210, 267
BlsI GCNGC 4 cut(s) 25, 172, 211, 268
BmgT120I GGNCC 2 cut(s) 107, 163
BmiI GGNNCC 2 cut(s) 164, 329
BmsI GCATC 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 56
BsaHI GRCGYC 2 cut(s) 315, 328
Bsc4I CCNNNNNNNGG 4 cut(s) 16, 261, 262, 324
Bse118I RCCGGY 2 cut(s) 72, 317
Bse3DI GCAATG 1 cut(s) 105
BseLI CCNNNNNNNGG 4 cut(s) 16, 261, 262, 324
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 4 cut(s) 47, 68, 213, 315
BseSI GKGCMC 1 cut(s) 126
BseYI CCCAGC 2 cut(s) 104, 261
BshFI GGCC 3 cut(s) 72, 109, 165
BshNI GGYRCC 1 cut(s) 327
BsiHKAI GWGCWC 1 cut(s) 126
BsiSI CCGG 2 cut(s) 73, 318
BslI CCNNNNNNNGG 4 cut(s) 16, 261, 262, 324
BsmAI GTCTC 1 cut(s) 73
BsnI GGCC 3 cut(s) 72, 109, 165
Bsp1286I GDGCHC 1 cut(s) 126
BspACI CCGC 5 cut(s) 23, 26, 170, 209, 266
BspANI GGCC 3 cut(s) 72, 109, 165
BspCNI CTCAG 4 cut(s) 48, 69, 214, 314
BspLI GGNNCC 2 cut(s) 164, 329
BspMAI CTGCAG 1 cut(s) 313
BspMI ACCTGC 1 cut(s) 275
BspT107I GGYRCC 1 cut(s) 327
BsrBI CCGCTC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 105
BsrFI RCCGGY 2 cut(s) 72, 317
BssAI RCCGGY 2 cut(s) 72, 317
BssNI GRCGYC 2 cut(s) 315, 328
BstACI GRCGYC 2 cut(s) 315, 328
BstC8I GCNNGC 5 cut(s) 74, 126, 130, 319, 332
BstDEI CTNAG 4 cut(s) 56, 77, 222, 301
BstEII GGTNACC 1 cut(s) 50
BstH2I RGCGCY 2 cut(s) 63, 331
BstHHI GCGC 2 cut(s) 62, 330
BstMAI GTCTC 1 cut(s) 73
BstMWI GCNNNNNNNGC 3 cut(s) 134, 290, 327
BstPI GGTNACC 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 309
BstSLI GKGCMC 1 cut(s) 126
BsuRI GGCC 3 cut(s) 72, 109, 165
BtgZI GCGATG 1 cut(s) 152
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 43
BveI ACCTGC 1 cut(s) 275
Cac8I GCNNGC 5 cut(s) 74, 126, 130, 319, 332
CaiI CAGNNNCTG 1 cut(s) 308
CfoI GCGC 2 cut(s) 62, 330
Cfr10I RCCGGY 2 cut(s) 72, 317
Cfr13I GGNCC 2 cut(s) 107, 163
CseI GACGC 1 cut(s) 323
Csp6I GTAC 1 cut(s) 143
CviAII CATG 2 cut(s) 47, 187
CviQI GTAC 1 cut(s) 143
DdeI CTNAG 4 cut(s) 56, 77, 222, 301
DinI GGCGCC 1 cut(s) 329
EaeI YGGCCR 1 cut(s) 70
Eco91I GGTNACC 1 cut(s) 50
EcoO65I GGTNACC 1 cut(s) 50
EgeI GGCGCC 1 cut(s) 329
EheI GGCGCC 1 cut(s) 329
FaeI CATG 2 cut(s) 50, 190
FaiI YATR 4 cut(s) 48, 153, 188, 282
FatI CATG 2 cut(s) 46, 186
Fnu4HI GCNGC 4 cut(s) 24, 171, 210, 267
Fsp4HI GCNGC 4 cut(s) 24, 171, 210, 267
FspBI CTAG 1 cut(s) 87
GlaI GCGC 2 cut(s) 61, 329
GluI GCNGC 4 cut(s) 24, 171, 210, 267
GsaI CCCAGC 2 cut(s) 108, 265
HaeII RGCGCY 2 cut(s) 63, 331
HaeIII GGCC 3 cut(s) 72, 109, 165
HapII CCGG 2 cut(s) 73, 318
HgaI GACGC 1 cut(s) 323
HhaI GCGC 2 cut(s) 62, 330
Hin1I GRCGYC 2 cut(s) 315, 328
Hin1II CATG 2 cut(s) 50, 190
Hin6I GCGC 2 cut(s) 60, 328
HinP1I GCGC 2 cut(s) 60, 328
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 3 cut(s) 13, 245, 305
HpaII CCGG 2 cut(s) 73, 318
HphI GGTGA 3 cut(s) 40, 62, 299
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 5 cut(s) 67, 94, 149, 223, 304
Hpy188III TCNNGA 2 cut(s) 17, 242
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 1 cut(s) 234
HpyCH4V TGCA 4 cut(s) 124, 155, 284, 311
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 290, 327
HpyF3I CTNAG 4 cut(s) 56, 77, 222, 301
Hsp92I GRCGYC 2 cut(s) 315, 328
Hsp92II CATG 2 cut(s) 50, 190
HspAI GCGC 2 cut(s) 60, 328
KasI GGCGCC 1 cut(s) 327
KroI GCCGGC 2 cut(s) 72, 317
KroNI GCCGGC 2 cut(s) 74, 319
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 9 cut(s) 2, 23, 68, 86, 90, 114, 247, 270, 331
LweI GCATC 1 cut(s) 235
MaeI CTAG 1 cut(s) 87
MaeIII GTNAC 2 cut(s) 50, 239
MbiI CCGCTC 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 126
Mly113I GGCGCC 1 cut(s) 328
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 5 cut(s) 26, 73, 88, 127, 290
MreI CGCCGGCG 1 cut(s) 317
MroNI GCCGGC 2 cut(s) 72, 317
MseI TTAA 1 cut(s) 197
MspI CCGG 2 cut(s) 73, 318
MwoI GCNNNNNNNGC 3 cut(s) 134, 290, 327
NaeI GCCGGC 2 cut(s) 74, 319
NarI GGCGCC 1 cut(s) 328
NgoMIV GCCGGC 2 cut(s) 72, 317
NlaIII CATG 2 cut(s) 50, 190
NlaIV GGNNCC 2 cut(s) 164, 329
NmeAIII GCCGAG 1 cut(s) 191
NmuCI GTSAC 2 cut(s) 50, 239
PaqCI CACCTGC 1 cut(s) 275
PdiI GCCGGC 2 cut(s) 74, 319
PfeI GAWTC 2 cut(s) 13, 305
PkrI GCNGC 4 cut(s) 25, 172, 211, 268
PleI GAGTC 1 cut(s) 239
PluTI GGCGCC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 239
PspEI GGTNACC 1 cut(s) 50
PspFI CCCAGC 2 cut(s) 104, 261
PspN4I GGNNCC 2 cut(s) 164, 329
PspPI GGNCC 2 cut(s) 107, 163
PstI CTGCAG 1 cut(s) 313
PstNI CAGNNNCTG 1 cut(s) 308
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 4 cut(s) 24, 171, 210, 267
Sau96I GGNCC 2 cut(s) 107, 163
SchI GAGTC 1 cut(s) 239
SduI GDGCHC 1 cut(s) 126
SetI ASST 7 cut(s) 12, 57, 88, 92, 185, 263, 289
SfaNI GCATC 1 cut(s) 235
SfcI CTRYAG 1 cut(s) 309
SfoI GGCGCC 1 cut(s) 329
SgrAI CRCCGGYG 1 cut(s) 317
SsiI CCGC 5 cut(s) 23, 26, 170, 209, 266
SspDI GGCGCC 1 cut(s) 327
SspMI CTAG 1 cut(s) 87
TauI GCSGC 4 cut(s) 26, 173, 212, 269
TfiI GAWTC 2 cut(s) 13, 305
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 1 cut(s) 43
TseFI GTSAC 2 cut(s) 50, 239
Tsp45I GTSAC 2 cut(s) 50, 239
TspDTI ATGAA 1 cut(s) 175
TspRI CASTG 1 cut(s) 43
VneI GTGCAC 1 cut(s) 122
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.