Rh7DG021200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0008185
Physical Location & Seq
Reverse (-)
1718887 .. 1719222
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG021200.1

Sequence Viewer

Length: 336 bp
ATGGCGACCACCGAATCTAGCCCTCAGATTTGCATCCCCATGTTTGCTTTGCGCCAAAGTGAAATGGGTGATGTAAATGAGATTGTTCGGTGGTCTACTCTGTTGAAACCCAAGGATAGATGGGTGCAAAATTGGGATTTTTGGATTCGTCCGTGTAGGGCACGGCTCAAATCAGACCAAATCTTGATGGGAGACCTAATTCTAGAAGCGGCGGTGAGAGGCAGTGCAGATCATGGTGGCCTGAGCGCCTCTGATGGTCGGCAGAGACAAGCTAGGTCAGAGGCAATGGCTAGGCTATTTGGTTCGACGCACGCAGGCGAGGCGATGGTACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.43

Weight (kDa)

7.85

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 95
AciI CCGC 2 cut(s) 209, 212
AfaI GTAC 1 cut(s) 330
AgsI TTSAA 1 cut(s) 106
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
Alw26I GTCTC 2 cut(s) 186, 259
AoxI GGCC 1 cut(s) 238
AspLEI GCGC 2 cut(s) 54, 248
AsuHPI GGTGA 2 cut(s) 80, 226
BaeGI GKGCMC 1 cut(s) 163
BccI CCATC 4 cut(s) 114, 181, 248, 319
BceAI ACGGC 1 cut(s) 179
BcoDI GTCTC 2 cut(s) 186, 259
BfaI CTAG 4 cut(s) 18, 203, 273, 291
BfoI RGCGCY 1 cut(s) 249
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
BmsI GCATC 1 cut(s) 42
Bpu10I CCTNAGC 1 cut(s) 242
BsaBI GATNNNNATC 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 291
Bse8I GATNNNNATC 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 33
BseJI GATNNNNATC 1 cut(s) 32
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 2 cut(s) 38, 233
BseSI GKGCMC 1 cut(s) 163
BsgI GTGCAG 1 cut(s) 246
BshFI GGCC 1 cut(s) 240
BsmAI GTCTC 2 cut(s) 186, 259
BsnI GGCC 1 cut(s) 240
Bso31I GGTCTC 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 1 cut(s) 229
BspACI CCGC 2 cut(s) 209, 212
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 2 cut(s) 37, 234
BspTNI GGTCTC 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 1 cut(s) 229
BssT1I CCWWGG 1 cut(s) 111
BstC8I GCNNGC 2 cut(s) 312, 316
BstDEI CTNAG 2 cut(s) 24, 242
BstF5I GGATG 1 cut(s) 33
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 2 cut(s) 54, 248
BstKTI GATC 1 cut(s) 232
BstMAI GTCTC 2 cut(s) 186, 259
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstSLI GKGCMC 1 cut(s) 163
BsuRI GGCC 1 cut(s) 240
BtsCI GGATG 1 cut(s) 33
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 229
Cac8I GCNNGC 2 cut(s) 312, 316
CfoI GCGC 2 cut(s) 54, 248
CseI GACGC 1 cut(s) 316
Csp6I GTAC 1 cut(s) 329
CviAII CATG 2 cut(s) 40, 233
CviJI RGCY 6 cut(s) 21, 166, 240, 272, 290, 295
CviKI_1 RGCY 6 cut(s) 21, 166, 240, 272, 290, 295
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 2 cut(s) 24, 242
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 2 cut(s) 43, 236
FaiI YATR 2 cut(s) 41, 234
FatI CATG 2 cut(s) 39, 232
FblI GTMKAC 1 cut(s) 95
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 4 cut(s) 18, 203, 273, 291
GlaI GCGC 2 cut(s) 53, 247
GluI GCNGC 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 1 cut(s) 240
HgaI GACGC 1 cut(s) 316
HhaI GCGC 2 cut(s) 54, 248
Hin1II CATG 2 cut(s) 43, 236
Hin6I GCGC 2 cut(s) 52, 246
HinP1I GCGC 2 cut(s) 52, 246
HinfI GANTC 2 cut(s) 14, 145
HphI GGTGA 2 cut(s) 80, 226
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 5 cut(s) 27, 175, 253, 280, 335
Hpy188III TCNNGA 2 cut(s) 184, 203
Hpy8I GTNNAC 1 cut(s) 96
Hpy99I CGWCG 1 cut(s) 310
HpyCH4V TGCA 3 cut(s) 33, 127, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 2 cut(s) 24, 242
Hsp92II CATG 2 cut(s) 43, 236
HspAI GCGC 2 cut(s) 52, 246
Kzo9I GATC 1 cut(s) 229
LpnPI CCDG 2 cut(s) 254, 300
LweI GCATC 1 cut(s) 42
MaeI CTAG 4 cut(s) 18, 203, 273, 291
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 2 cut(s) 130, 198
MnlI CCTC 5 cut(s) 33, 212, 259, 274, 313
MslI CAYNNNNRTG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 320
NdeII GATC 1 cut(s) 229
NlaIII CATG 2 cut(s) 43, 236
PfeI GAWTC 2 cut(s) 14, 145
PkrI GCNGC 1 cut(s) 211
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
RseI CAYNNNNRTG 1 cut(s) 38
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 1 cut(s) 229
SduI GDGCHC 1 cut(s) 163
SetI ASST 3 cut(s) 198, 274, 278
SfaNI GCATC 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 38
Sse9I AATT 2 cut(s) 130, 198
SsiI CCGC 2 cut(s) 209, 212
SspMI CTAG 4 cut(s) 18, 203, 273, 291
StyI CCWWGG 1 cut(s) 111
TaqI TCGA 1 cut(s) 305
TasI AATT 2 cut(s) 130, 198
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 2 cut(s) 14, 145
TscAI CASTG 1 cut(s) 229
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 1 cut(s) 229
XbaI TCTAGA 1 cut(s) 202
XmiI GTMKAC 1 cut(s) 95
XspI CTAG 4 cut(s) 18, 203, 273, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.