Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008185

Physical Location & Seq

Genomic Coordinates Forward (+)

14078080 .. 14084383

Gene Structure 6304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG089600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTTTGCTTCGCGCCGGAGTGATATGGTTGAGGAGAGTAAAAGTGATCGGTGGTCTGATTTGGGGAAACCCAAGCCTAGATGGGTGCGAGTATGGAATTTCTGGATTCGTCCATGTCGGGCTCGACTCAAATCGGACCTGCTTTTGGTTAGCGAAGCAATGCATGATCGCCTCTTCCTCGACCCGATCCGGACGGTGGCACTGACCTGCGGTGCACATCAGGATGTTTCCAGTGCCCAAAGCAAATCGATGGACGTCGTCGCACTCCAACCTGCGGGTGTGACGGTGCTCCGATGTGCAGCAGCATTAGCAAGGATGATATGGGCCGTTCATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.75

Weight (kDa)

9.91

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008185)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000016386 RLG00000019388 RLG00000023749 RLG00000025324 RLG00000029183 RLG00000029321
rosa_multiflora	Rmu_sc0000674.1_g000016 Rmu_sc0005706.1_g000007 Rmu_ssc0000421.1_g000059
rosa_roxburghii	Rroxscaffold_158G00443760 Rroxscaffold_4G00310830
rosa_rugosa	Rorug01G0064200 Rorug04G0428800
rosa_samantha	Rh1CG371300 Rh1DG388700 Rh2AG237800 Rh2DG245300 Rh4CG156000 Rh4DG117200 Rh6AG473200 Rh6BG089600 Rh6BG320100 Rh6DG336000 Rh7DG021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
Acc36I	ACCTGC	3 cut(s)	147, 215, 280
AccII	CGCG	1 cut(s)	13
AccIII	TCCGGA	1 cut(s)	189
AciI	CCGC	2 cut(s)	210, 275
AclWI	GGATC	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	97
AcyI	GRCGYC	1 cut(s)	255
AfiI	CCNNNNNNNGG	3 cut(s)	145, 196, 274
Alw21I	GWGCWC	2 cut(s)	217, 291
Alw44I	GTGCAC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	181
Aor13HI	TCCGGA	1 cut(s)	189
AoxI	GGCC	1 cut(s)	324
ApaLI	GTGCAC	1 cut(s)	213
ApeKI	GCWGC	2 cut(s)	299, 302
ApoI	RAATTY	1 cut(s)	97
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	2 cut(s)	136, 324
AvaII	GGWCC	1 cut(s)	136
BaeGI	GKGCMC	2 cut(s)	217, 238
BanII	GRGCYC	1 cut(s)	124
Bbv12I	GWGCWC	2 cut(s)	217, 291
BbvI	GCAGC	2 cut(s)	311, 314
BccI	CCATC	2 cut(s)	75, 244
BceAI	ACGGC	1 cut(s)	311
BfaI	CTAG	2 cut(s)	78, 337
BfuAI	ACCTGC	3 cut(s)	147, 215, 280
BisI	GCNGC	2 cut(s)	300, 303
BlsI	GCNGC	2 cut(s)	301, 304
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	136, 324
Bsa29I	ATCGAT	1 cut(s)	248
BsaHI	GRCGYC	1 cut(s)	255
BsaWI	WCCGGW	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 196, 274
Bse1I	ACTGG	1 cut(s)	231
Bse3DI	GCAATG	1 cut(s)	165
BseAI	TCCGGA	1 cut(s)	189
BseCI	ATCGAT	1 cut(s)	248
BseGI	GGATG	2 cut(s)	229, 321
BseLI	CCNNNNNNNGG	3 cut(s)	145, 196, 274
BseMI	GCAATG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	47
BseSI	GKGCMC	2 cut(s)	217, 238
BseXI	GCAGC	2 cut(s)	311, 314
BsgI	GTGCAG	1 cut(s)	318
Bsh1236I	CGCG	1 cut(s)	13
BshFI	GGCC	1 cut(s)	326
BshVI	ATCGAT	1 cut(s)	248
BsiHKAI	GWGCWC	2 cut(s)	217, 291
BsiSI	CCGG	2 cut(s)	16, 190
BslI	CCNNNNNNNGG	3 cut(s)	145, 196, 274
BsnI	GGCC	1 cut(s)	326
Bsp1286I	GDGCHC	4 cut(s)	124, 217, 238, 291
Bsp13I	TCCGGA	1 cut(s)	189
Bsp143I	GATC	3 cut(s)	46, 166, 186
BspACI	CCGC	2 cut(s)	210, 275
BspANI	GGCC	1 cut(s)	326
BspDI	ATCGAT	1 cut(s)	248
BspEI	TCCGGA	1 cut(s)	189
BspFNI	CGCG	1 cut(s)	13
BspMI	ACCTGC	3 cut(s)	147, 215, 280
BspPI	GGATC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	231
BssMI	GATC	3 cut(s)	46, 166, 186
BssNI	GRCGYC	1 cut(s)	255
Bst4CI	ACNGT	2 cut(s)	196, 286
Bst6I	CTCTTC	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	229, 321
BstFNI	CGCG	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	3 cut(s)	49, 169, 189
BstMBI	GATC	3 cut(s)	46, 166, 186
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstSLI	GKGCMC	2 cut(s)	217, 238
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	2 cut(s)	311, 314
Bsu15I	ATCGAT	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	326
BsuTUI	ATCGAT	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	229, 321
BtsIMutI	CAGTG	2 cut(s)	200, 238
BveI	ACCTGC	3 cut(s)	147, 215, 280
CfoI	GCGC	1 cut(s)	15
Cfr13I	GGNCC	2 cut(s)	136, 324
ClaI	ATCGAT	1 cut(s)	248
CviAII	CATG	2 cut(s)	114, 164
CviJI	RGCY	3 cut(s)	76, 122, 326
CviKI_1	RGCY	3 cut(s)	76, 122, 326
DpnI	GATC	3 cut(s)	48, 168, 188
DpnII	GATC	3 cut(s)	46, 166, 186
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	136
EcoT22I	ATGCAT	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	124
FaeI	CATG	2 cut(s)	117, 167
FaiI	YATR	5 cut(s)	26, 94, 115, 165, 322
FatI	CATG	2 cut(s)	113, 163
FauI	CCCGC	1 cut(s)	268
Fnu4HI	GCNGC	2 cut(s)	300, 303
FokI	GGATG	2 cut(s)	236, 328
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	2 cut(s)	300, 303
FspBI	CTAG	2 cut(s)	78, 337
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	2 cut(s)	300, 303
HaeIII	GGCC	1 cut(s)	326
HapII	CCGG	2 cut(s)	16, 190
HhaI	GCGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	2 cut(s)	117, 167
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	106, 126
HpaII	CCGG	2 cut(s)	16, 190
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	3 cut(s)	58, 136, 293
Hpy188III	TCNNGA	3 cut(s)	103, 190, 221
Hpy8I	GTNNAC	1 cut(s)	215
Hpy99I	CGWCG	2 cut(s)	260, 263
HpyCH4III	ACNGT	2 cut(s)	196, 286
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	3 cut(s)	163, 215, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	117, 167
HspAI	GCGC	1 cut(s)	13
Kpn2I	TCCGGA	1 cut(s)	189
Kzo9I	GATC	3 cut(s)	46, 166, 186
LmnI	GCTCC	1 cut(s)	294
LpnPI	CCDG	8 cut(s)	29, 88, 152, 203, 206, 220, 244, 285
Lsp1109I	GCAGC	2 cut(s)	311, 314
MaeI	CTAG	2 cut(s)	78, 337
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	3 cut(s)	48, 168, 188
MboI	GATC	3 cut(s)	46, 166, 186
MboII	GAAGA	1 cut(s)	166
MhlI	GDGCHC	4 cut(s)	124, 217, 238, 291
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	3 cut(s)	25, 182, 188
Mph1103I	ATGCAT	1 cut(s)	165
MroI	TCCGGA	1 cut(s)	189
MslI	CAYNNNNRTG	1 cut(s)	222
MspI	CCGG	2 cut(s)	16, 190
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeII	GATC	3 cut(s)	46, 166, 186
NlaIII	CATG	2 cut(s)	117, 167
NmuCI	GTSAC	1 cut(s)	280
NsiI	ATGCAT	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	106
PflFI	GACNNNGTC	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	301, 304
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
PspPI	GGNCC	2 cut(s)	136, 324
PsyI	GACNNNGTC	1 cut(s)	257
RseI	CAYNNNNRTG	1 cut(s)	222
SatI	GCNGC	2 cut(s)	300, 303
Sau3AI	GATC	3 cut(s)	46, 166, 186
Sau96I	GGNCC	2 cut(s)	136, 324
SchI	GAGTC	1 cut(s)	120
SduI	GDGCHC	4 cut(s)	124, 217, 238, 291
SetI	ASST	4 cut(s)	141, 209, 258, 274
SinI	GGWCC	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	1 cut(s)	97
SsiI	CCGC	2 cut(s)	210, 275
SspMI	CTAG	2 cut(s)	78, 337
TaaI	ACNGT	2 cut(s)	196, 286
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	3 cut(s)	124, 180, 248
TasI	AATT	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	106
TscAI	CASTG	2 cut(s)	207, 238
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	2 cut(s)	299, 302
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	320
TspRI	CASTG	2 cut(s)	207, 238
Tth111I	GACNNNGTC	1 cut(s)	257
VneI	GTGCAC	1 cut(s)	213
VpaK11BI	GGWCC	1 cut(s)	136
XapI	RAATTY	1 cut(s)	97
XspI	CTAG	2 cut(s)	78, 337
ZraI	GACGTC	1 cut(s)	256
Zsp2I	ATGCAT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.