Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000110.1

Orthogroup ID

OG0002550

Physical Location & Seq

Genomic Coordinates Reverse (-)

243772 .. 246551

Gene Structure 2780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atgtacaccaatgatggcttggctctgttagcgctggtctccaatgctgttcacaagatttggaaatggccgcgtgatgacaggaataatccatcaggaaaggctagtgcatatgttgttccacagttgtggcagcctcggaatggaattcttatggctaatgatgtaaatgacaataagactgctgaggaatatactgcatgcattgctgtatataaaaatggttcttacatgatatccgcatctggcggtaaagtctctttgttcaacatgatgacatttaagtggactcccaaagatgcacttgctgctcccatctcatggtcaatatattcatgcgatggtttgttggtttatgctactttttgtgacggtgttgtgggagtttttgatgctaatagcttaagactcagatgtcgaatggtgccttctgcttatatagtatataccatcattttctctcaggtgagcacaaacggtggcaacccctcctatcctctggttgtagcagctcatccatctgagcctaaccagattgcagttggcatgactgacgggtcagtgcatttggttgaaccatctgatgcagagctgaagtggggtggcacaccctctcaagggataatggtccttccaattcatcaaatccttctcctagtggtcaagcatcagaacttccttccaggtcaggaagaatgtgttaaggcagctccttttggacccttaccaaagggatatatatgggctcccctgtatatctgtgacgaccacttaggacctcctctctatgcgtctcctatgtctcttgtcttatttgcagccagtattttgcgcacattgacaaaaaactgccctcatttgcatgatgagagttacagtgatagccgttggaaaaattttcatgtccctcctgtttataaaaccactgatgcattgataatgcagatattcgtcaagactcttattggaaagaccttaacccttgaggttgttagctctgacaccatttacaatgtcaaagccaaaatccgagacaaggaaggcatcccccaaaccagcaaaggctgcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

357

Amino Acids

39.29

Weight (kDa)

8.03

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	316 - 351	9.7e-07	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002550)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770 FvH4_7g33770
malus_domestica	MD01G1234100.v1.1 MD07G1306300.v1.1
prunus_persica	Prupe.2G324300_v2.0.a1
pyrus_communis	pycom01g24260 pycom07g27930
rosa_chinensis	RchiOBHm_Chr1g0382471 RchiOBHm_Chr1g0382481 RchiOBHm_Chr1g0383911
rosa_laevigata	RLG00000026087 RLG00000026174 RLG00000026177
rosa_multiflora	Rmu_sc0000110.1_g000051 Rmu_sc0003885.1_g000009 Rmu_sc0005139.1_g000028
rosa_roxburghii	Rroxscaffold_4G00277160 Rroxscaffold_4G00278020 Rroxscaffold_4G00278080
rosa_rugosa	Rorug01G0434600 Rorug01G0434900 Rorug01G0443000
rosa_samantha	Rh1AG459200 Rh1AG459300 Rh1AG459600 Rh1AG468900 Rh1BG415700 Rh1BG426600 Rh1CG429700 Rh1CG429800 Rh1CG439400 Rh1DG447800 Rh1DG447900 Rh1DG459400
rosa_wichuraiana	Rw1G040350 Rw1G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	918
AasI	GACNNNNNNGTC	2 cut(s)	414, 556
Acc16I	TGCGCA	1 cut(s)	833
AccB1I	GGYRCC	1 cut(s)	424
AccB7I	CCANNNNNTGG	1 cut(s)	321
AccII	CGCG	1 cut(s)	73
AciI	CCGC	3 cut(s)	71, 240, 249
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	2 cut(s)	147, 895
AcuI	CTGAAG	1 cut(s)	614
AfaI	GTAC	1 cut(s)	5
AfeI	AGCGCT	1 cut(s)	33
AfiI	CCNNNNNNNGG	5 cut(s)	143, 321, 617, 618, 1036
AflII	CTTAAG	1 cut(s)	403
AgsI	TTSAA	2 cut(s)	268, 575
AjnI	CCWGG	1 cut(s)	682
AleI	CACNNNNGTG	1 cut(s)	127
AluBI	AGCT	5 cut(s)	402, 512, 592, 710, 996
AluI	AGCT	5 cut(s)	402, 512, 592, 710, 996
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	5 cut(s)	43, 262, 798, 807, 1026
Aor51HI	AGCGCT	1 cut(s)	33
AoxI	GGCC	1 cut(s)	68
ApeKI	GCWGC	6 cut(s)	133, 308, 509, 707, 818, 1065
ApoI	RAATTY	2 cut(s)	147, 895
AspLEI	GCGC	2 cut(s)	34, 834
AspS9I	GGNCC	3 cut(s)	628, 719, 776
AsuHPI	GGTGA	1 cut(s)	478
AvaII	GGWCC	3 cut(s)	628, 719, 776
BanI	GGYRCC	1 cut(s)	424
BanII	GRGCYC	1 cut(s)	748
Bbv12I	GWGCWC	1 cut(s)	473
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	6 cut(s)	145, 295, 521, 719, 830, 1052
BccI	CCATC	7 cut(s)	8, 100, 323, 335, 458, 526, 586
BceAI	ACGGC	1 cut(s)	870
BciT130I	CCWGG	1 cut(s)	684
BcoDI	GTCTC	5 cut(s)	43, 262, 798, 807, 1026
BfaI	CTAG	2 cut(s)	105, 656
BfoI	RGCGCY	1 cut(s)	35
BfrI	CTTAAG	1 cut(s)	403
BisI	GCNGC	7 cut(s)	71, 134, 309, 510, 708, 819, 1066
BlsI	GCNGC	7 cut(s)	72, 135, 310, 511, 709, 820, 1067
Bme1390I	CCNGG	1 cut(s)	684
Bme18I	GGWCC	3 cut(s)	628, 719, 776
BmgT120I	GGNCC	3 cut(s)	628, 719, 776
BmiI	GGNNCC	3 cut(s)	426, 721, 747
BmrFI	CCNGG	1 cut(s)	684
BmsI	GCATC	7 cut(s)	251, 289, 382, 574, 676, 919, 1053
Bpu10I	CCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	2 cut(s)	600, 1004
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	5 cut(s)	143, 321, 617, 618, 1036
Bse1I	ACTGG	1 cut(s)	822
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	684
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	2 cut(s)	514, 1044
BseLI	CCNNNNNNNGG	5 cut(s)	143, 321, 617, 618, 1036
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	4 cut(s)	177, 424, 476, 513
BseNI	ACTGG	1 cut(s)	822
BseRI	GAGGAG	1 cut(s)	771
BseXI	GCAGC	6 cut(s)	145, 295, 521, 719, 830, 1052
Bsh1236I	CGCG	1 cut(s)	73
BshFI	GGCC	1 cut(s)	70
BshNI	GGYRCC	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	473
BslFI	GGGAC	1 cut(s)	890
BslI	CCNNNNNNNGG	5 cut(s)	143, 321, 617, 618, 1036
BsmAI	GTCTC	5 cut(s)	43, 262, 798, 807, 1026
BsmBI	CGTCTC	1 cut(s)	798
BsmFI	GGGAC	1 cut(s)	890
BsnI	GGCC	1 cut(s)	70
Bso31I	GGTCTC	1 cut(s)	43
Bsp1286I	GDGCHC	2 cut(s)	473, 748
Bsp1407I	TGTACA	1 cut(s)	3
BspACI	CCGC	3 cut(s)	71, 240, 249
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	4 cut(s)	178, 423, 475, 514
BspFNI	CGCG	1 cut(s)	73
BspLI	GGNNCC	3 cut(s)	426, 721, 747
BspT107I	GGYRCC	1 cut(s)	424
BspTI	CTTAAG	1 cut(s)	403
BspTNI	GGTCTC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	204
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	822
BssECI	CCNNGG	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	4 cut(s)	126, 374, 479, 878
BstAFI	CTTAAG	1 cut(s)	403
BstAPI	GCANNNNNTGC	3 cut(s)	206, 308, 1065
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	5 cut(s)	186, 410, 462, 522, 772
BstF5I	GGATG	2 cut(s)	514, 1044
BstFNI	CGCG	1 cut(s)	73
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	2 cut(s)	34, 834
BstMAI	GTCTC	5 cut(s)	43, 262, 798, 807, 1026
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 206, 308, 1065
BstNI	CCWGG	1 cut(s)	684
BstNSI	RCATGY	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	682
BstUI	CGCG	1 cut(s)	73
BstV1I	GCAGC	6 cut(s)	145, 295, 521, 719, 830, 1052
BstXI	CCANNNNNNTGG	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	70
BtgZI	GCGATG	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	514, 1044
BtsIMutI	CAGTG	3 cut(s)	567, 883, 924
Cac8I	GCNNGC	1 cut(s)	202
CfoI	GCGC	2 cut(s)	34, 834
Cfr13I	GGNCC	3 cut(s)	628, 719, 776
CseI	GACGC	1 cut(s)	780
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	8 cut(s)	201, 232, 271, 321, 336, 547, 863, 902
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	5 cut(s)	186, 410, 462, 522, 772
DrdI	GACNNNNNNGTC	2 cut(s)	414, 556
DseDI	GACNNNNNNGTC	2 cut(s)	414, 556
EaeI	YGGCCR	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	748
Eco31I	GGTCTC	1 cut(s)	43
Eco32I	GATATC	1 cut(s)	237
Eco47I	GGWCC	3 cut(s)	628, 719, 776
Eco47III	AGCGCT	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	614
EcoO109I	RGGNCCY	1 cut(s)	776
EcoRI	GAATTC	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	682
EcoRV	GATATC	1 cut(s)	237
EcoT22I	ATGCAT	2 cut(s)	206, 934
EcoT38I	GRGCYC	1 cut(s)	748
Esp3I	CGTCTC	1 cut(s)	798
FaeI	CATG	8 cut(s)	204, 235, 274, 324, 339, 550, 866, 905
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FaqI	GGGAC	1 cut(s)	890
FatI	CATG	8 cut(s)	200, 231, 270, 320, 335, 546, 862, 901
FauNDI	CATATG	1 cut(s)	112
Fnu4HI	GCNGC	7 cut(s)	71, 134, 309, 510, 708, 819, 1066
FokI	GGATG	2 cut(s)	501, 1031
FriOI	GRGCYC	1 cut(s)	748
Fsp4HI	GCNGC	7 cut(s)	71, 134, 309, 510, 708, 819, 1066
FspBI	CTAG	2 cut(s)	105, 656
FspI	TGCGCA	1 cut(s)	833
GlaI	GCGC	2 cut(s)	33, 833
GluI	GCNGC	7 cut(s)	71, 134, 309, 510, 708, 819, 1066
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	70
HgaI	GACGC	1 cut(s)	780
HhaI	GCGC	2 cut(s)	34, 834
Hin1II	CATG	8 cut(s)	204, 235, 274, 324, 339, 550, 866, 905
Hin6I	GCGC	2 cut(s)	32, 832
HinP1I	GCGC	2 cut(s)	32, 832
HinfI	GANTC	3 cut(s)	289, 408, 958
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	3 cut(s)	6, 52, 288
Hpy188I	TCNGA	7 cut(s)	141, 413, 523, 583, 672, 1000, 1031
Hpy188III	TCNNGA	3 cut(s)	96, 689, 955
Hpy8I	GTNNAC	3 cut(s)	6, 52, 288
HpyAV	CCTTC	5 cut(s)	438, 641, 659, 689, 1034
HpyCH4III	ACNGT	4 cut(s)	126, 374, 479, 878
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 206, 308, 1065
HpyF3I	CTNAG	5 cut(s)	186, 410, 462, 522, 772
Hsp92II	CATG	8 cut(s)	204, 235, 274, 324, 339, 550, 866, 905
HspAI	GCGC	2 cut(s)	32, 832
LmnI	GCTCC	3 cut(s)	316, 715, 751
Lsp1109I	GCAGC	6 cut(s)	145, 295, 521, 719, 830, 1052
LweI	GCATC	7 cut(s)	251, 289, 382, 574, 676, 919, 1053
MaeI	CTAG	2 cut(s)	105, 656
MaeIII	GTNAC	3 cut(s)	368, 761, 872
MboII	GAAGA	1 cut(s)	704
MhlI	GDGCHC	2 cut(s)	473, 748
MluCI	AATT	3 cut(s)	147, 636, 895
MlyI	GAGTC	3 cut(s)	283, 402, 952
MmeI	TCCRAC	1 cut(s)	869
Mph1103I	ATGCAT	2 cut(s)	206, 934
MseI	TTAA	4 cut(s)	282, 404, 702, 977
MslI	CAYNNNNRTG	3 cut(s)	127, 283, 861
MspCI	CTTAAG	1 cut(s)	403
MspR9I	CCNGG	1 cut(s)	684
MvaI	CCWGG	1 cut(s)	684
MvnI	CGCG	1 cut(s)	73
MwoI	GCNNNNNNNGC	4 cut(s)	29, 206, 308, 1065
NdeI	CATATG	1 cut(s)	112
NlaIII	CATG	8 cut(s)	204, 235, 274, 324, 339, 550, 866, 905
NlaIV	GGNNCC	3 cut(s)	426, 721, 747
NmuCI	GTSAC	2 cut(s)	368, 761
NsbI	TGCGCA	1 cut(s)	833
NsiI	ATGCAT	2 cut(s)	206, 934
NspI	RCATGY	1 cut(s)	204
OliI	CACNNNNGTG	1 cut(s)	127
PaeI	GCATGC	1 cut(s)	204
PflMI	CCANNNNNTGG	1 cut(s)	321
PkrI	GCNGC	7 cut(s)	72, 135, 310, 511, 709, 820, 1067
PleI	GAGTC	3 cut(s)	283, 402, 952
PpsI	GAGTC	3 cut(s)	283, 402, 952
PpuMI	RGGWCCY	1 cut(s)	776
PsiI	TTATAA	1 cut(s)	918
Psp5II	RGGWCCY	1 cut(s)	776
Psp6I	CCWGG	1 cut(s)	682
PspGI	CCWGG	1 cut(s)	682
PspN4I	GGNNCC	3 cut(s)	426, 721, 747
PspPI	GGNCC	3 cut(s)	628, 719, 776
PspPPI	RGGWCCY	1 cut(s)	776
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	3 cut(s)	127, 283, 861
SaqAI	TTAA	4 cut(s)	282, 404, 702, 977
SatI	GCNGC	7 cut(s)	71, 134, 309, 510, 708, 819, 1066
Sau96I	GGNCC	3 cut(s)	628, 719, 776
SchI	GAGTC	3 cut(s)	283, 402, 952
ScrFI	CCNGG	1 cut(s)	684
SduI	GDGCHC	2 cut(s)	473, 748
SfaNI	GCATC	7 cut(s)	251, 289, 382, 574, 676, 919, 1053
SinI	GGWCC	3 cut(s)	628, 719, 776
SmiMI	CAYNNNNRTG	3 cut(s)	127, 283, 861
SmlI	CTYRAG	3 cut(s)	403, 615, 983
SmoI	CTYRAG	3 cut(s)	403, 615, 983
SphI	GCATGC	1 cut(s)	204
Sse9I	AATT	3 cut(s)	147, 636, 895
SsiI	CCGC	3 cut(s)	71, 240, 249
SspMI	CTAG	2 cut(s)	105, 656
StyD4I	CCNGG	1 cut(s)	682
TaaI	ACNGT	4 cut(s)	126, 374, 479, 878
TaqI	TCGA	1 cut(s)	418
TasI	AATT	3 cut(s)	147, 636, 895
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	73
Tru1I	TTAA	4 cut(s)	282, 404, 702, 977
Tru9I	TTAA	4 cut(s)	282, 404, 702, 977
TscAI	CASTG	3 cut(s)	567, 883, 931
TseFI	GTSAC	2 cut(s)	368, 761
TseI	GCWGC	6 cut(s)	133, 308, 509, 707, 818, 1065
Tsp45I	GTSAC	2 cut(s)	368, 761
TspDTI	ATGAA	3 cut(s)	324, 629, 890
TspRI	CASTG	3 cut(s)	567, 883, 931
Van91I	CCANNNNNTGG	1 cut(s)	321
Vha464I	CTTAAG	1 cut(s)	403
VpaK11BI	GGWCC	3 cut(s)	628, 719, 776
XapI	RAATTY	2 cut(s)	147, 895
XceI	RCATGY	1 cut(s)	204
XcmI	CCANNNNNNNNNTGG	2 cut(s)	16, 539
XspI	CTAG	2 cut(s)	105, 656
Zsp2I	ATGCAT	2 cut(s)	206, 934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.