Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000129.1

Orthogroup ID

OG0003259

Physical Location & Seq

Genomic Coordinates Reverse (-)

58817 .. 59636

Gene Structure 820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgggcgcggcgtactggaccgccaagagtggcgtgggcgtggcctcgatgggagtgatgcagaaggagctggtcatgaaatcgattgtttcggtggtcatggctggagtgcttgggatctacggcctcatcatatctgtgattatcagcatcgggatcaatccaaaggctaaatcttattacctgtttgatggatatgctcacttgtcctctgtccttacttgtggccttgctggactttccaccgagcttcaagacaggcctgtcgtttctctccatcaccgaaatctccaaattgtcttcgaacttgatgctcggaacggagcttcggaagaagacggcggctgttccgtgccaagaattaccaatgaaattctcggcttcgtcgctcagattttgaagctttcgaactattggacccgctttcctataccaccagaccaccatgaagtcagaatggaagctgagcagagggaacctatagcagaagaactggaaggaggtggccgacataaaaccccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009507 GO:0009536 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022613 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042254 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071840 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C RBFA

Protein Analysis

174

Amino Acids

18.92

Weight (kDa)

6.06

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	1 - 49	4.5e-10	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G10950 AT2G10950 AT2G10950
fragaria_vesca	FvH4_1g02550
malus_domestica	MD02G1023000.v1.1 MD15G1165700.v1.1
prunus_persica	Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1
pyrus_communis	pycom02g01980 pycom02g01990 pycom15g14850
rosa_chinensis	RchiOBHm_Chr2g0087581
rosa_laevigata	RLG00000014236 RLG00000015880
rosa_multiflora	Rmu_sc0000129.1_g000013 Rmu_sc0000146.1_g000024 Rmu_sc0001000.1_g000015 Rmu_sc0002299.1_g000025 Rmu_sc0007639.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153450 Rroxscaffold_6G00397290
rosa_rugosa	Rorug01G0476700
rosa_samantha	Rh2AG030300 Rh2AG030400 Rh2BG030100 Rh2CG030400 Rh2DG030300 Rh4CG011200 Rh4CG011800 Rh4CG012200 Rh4CG012600 Rh4DG394600 Rh5AG455300
rosa_wichuraiana	Rw2G002400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccII	CGCG	1 cut(s)	8
AciI	CCGC	4 cut(s)	8, 21, 342, 421
AclWI	GGATC	2 cut(s)	125, 164
AcoI	YGGCCR	1 cut(s)	505
AcsI	RAATTY	1 cut(s)	372
AfaI	GTAC	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	254, 400
AluBI	AGCT	5 cut(s)	70, 250, 326, 403, 464
AluI	AGCT	5 cut(s)	70, 250, 326, 403, 464
AlwI	GGATC	2 cut(s)	125, 164
AoxI	GGCC	5 cut(s)	42, 124, 226, 260, 505
ApoI	RAATTY	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	18, 417
AsuHPI	GGTGA	1 cut(s)	272
AsuII	TTCGAA	2 cut(s)	303, 407
AvaII	GGWCC	2 cut(s)	18, 417
BbsI	GAAGAC	2 cut(s)	292, 342
BccI	CCATC	3 cut(s)	43, 185, 285
BceAI	ACGGC	2 cut(s)	139, 355
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BfmI	CTRYAG	1 cut(s)	480
BisI	GCNGC	2 cut(s)	9, 343
BlpI	GCTNAGC	1 cut(s)	465
BlsI	GCNGC	2 cut(s)	10, 344
Bme18I	GGWCC	2 cut(s)	18, 417
BmgT120I	GGNCC	2 cut(s)	18, 417
BmiI	GGNNCC	2 cut(s)	419, 477
BmsI	GCATC	3 cut(s)	48, 159, 301
BpiI	GAAGAC	2 cut(s)	292, 342
BpmI	CTGGAG	1 cut(s)	126
Bpu1102I	GCTNAGC	1 cut(s)	465
Bpu14I	TTCGAA	2 cut(s)	303, 407
Bsa29I	ATCGAT	1 cut(s)	83
Bse1I	ACTGG	2 cut(s)	20, 498
BseCI	ATCGAT	1 cut(s)	83
BseMII	CTCAG	2 cut(s)	404, 456
BseNI	ACTGG	2 cut(s)	20, 498
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	5 cut(s)	44, 126, 228, 262, 507
BshVI	ATCGAT	1 cut(s)	83
BsnI	GGCC	5 cut(s)	44, 126, 228, 262, 507
Bsp119I	TTCGAA	2 cut(s)	303, 407
Bsp143I	GATC	2 cut(s)	117, 156
Bsp1720I	GCTNAGC	1 cut(s)	465
BspACI	CCGC	4 cut(s)	8, 21, 342, 421
BspANI	GGCC	5 cut(s)	44, 126, 228, 262, 507
BspCNI	CTCAG	2 cut(s)	403, 457
BspDI	ATCGAT	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	419, 477
BspPI	GGATC	2 cut(s)	125, 164
BspT104I	TTCGAA	2 cut(s)	303, 407
BsrI	ACTGG	2 cut(s)	20, 498
BssMI	GATC	2 cut(s)	117, 156
BstBI	TTCGAA	2 cut(s)	303, 407
BstDEI	CTNAG	2 cut(s)	390, 465
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	2 cut(s)	120, 159
BstMBI	GATC	2 cut(s)	117, 156
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	480
BstUI	CGCG	1 cut(s)	8
BstV2I	GAAGAC	2 cut(s)	292, 342
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
Bsu15I	ATCGAT	1 cut(s)	83
BsuRI	GGCC	5 cut(s)	44, 126, 228, 262, 507
BsuTUI	ATCGAT	1 cut(s)	83
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	18, 417
ClaI	ATCGAT	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	3 cut(s)	76, 100, 446
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	2 cut(s)	390, 465
DpnI	GATC	2 cut(s)	119, 158
DpnII	GATC	2 cut(s)	117, 156
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	505
Eco147I	AGGCCT	1 cut(s)	262
Eco47I	GGWCC	2 cut(s)	18, 417
FaeI	CATG	3 cut(s)	79, 103, 449
FaiI	YATR	8 cut(s)	77, 101, 134, 198, 431, 447, 482, 513
FatI	CATG	3 cut(s)	75, 99, 445
FauI	CCCGC	1 cut(s)	428
Fnu4HI	GCNGC	2 cut(s)	9, 343
Fsp4HI	GCNGC	2 cut(s)	9, 343
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	2 cut(s)	9, 343
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	5 cut(s)	44, 126, 228, 262, 507
HhaI	GCGC	1 cut(s)	8
Hin1II	CATG	3 cut(s)	79, 103, 449
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	401
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	4 cut(s)	318, 331, 393, 455
Hpy188III	TCNNGA	3 cut(s)	76, 154, 254
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	2 cut(s)	58, 491
HpyCH4V	TGCA	1 cut(s)	61
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	2 cut(s)	390, 465
Hsp92II	CATG	3 cut(s)	79, 103, 449
HspAI	GCGC	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	117, 156
LmnI	GCTCC	2 cut(s)	67, 323
LpnPI	CCDG	8 cut(s)	56, 90, 197, 219, 244, 276, 450, 479
LweI	GCATC	3 cut(s)	48, 159, 301
MalI	GATC	2 cut(s)	119, 158
MboI	GATC	2 cut(s)	117, 156
MboII	GAAGA	4 cut(s)	292, 344, 347, 500
MflI	RGATCY	1 cut(s)	117
MluCI	AATT	3 cut(s)	294, 360, 372
MnlI	CCTC	5 cut(s)	55, 137, 220, 465, 494
MslI	CAYNNNNRTG	1 cut(s)	137
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeII	GATC	2 cut(s)	117, 156
NlaIII	CATG	3 cut(s)	79, 103, 449
NlaIV	GGNNCC	2 cut(s)	419, 477
NmeAIII	GCCGAG	1 cut(s)	357
NspV	TTCGAA	2 cut(s)	303, 407
PagI	TCATGA	1 cut(s)	75
PceI	AGGCCT	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	10, 344
PspN4I	GGNNCC	2 cut(s)	419, 477
PspPI	GGNCC	2 cut(s)	18, 417
PsuI	RGATCY	1 cut(s)	117
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	137
SatI	GCNGC	2 cut(s)	9, 343
Sau3AI	GATC	2 cut(s)	117, 156
Sau96I	GGNCC	2 cut(s)	18, 417
SetI	ASST	8 cut(s)	72, 186, 252, 328, 405, 466, 481, 505
SfaNI	GCATC	3 cut(s)	48, 159, 301
SfcI	CTRYAG	1 cut(s)	480
SfuI	TTCGAA	2 cut(s)	303, 407
SinI	GGWCC	2 cut(s)	18, 417
SmiMI	CAYNNNNRTG	1 cut(s)	137
Sse9I	AATT	3 cut(s)	294, 360, 372
SseBI	AGGCCT	1 cut(s)	262
SsiI	CCGC	4 cut(s)	8, 21, 342, 421
StuI	AGGCCT	1 cut(s)	262
TaqI	TCGA	4 cut(s)	47, 83, 303, 407
TasI	AATT	3 cut(s)	294, 360, 372
TauI	GCSGC	2 cut(s)	11, 345
TspDTI	ATGAA	3 cut(s)	92, 384, 462
TspGWI	ACGGA	2 cut(s)	336, 340
VpaK11BI	GGWCC	2 cut(s)	18, 417
XapI	RAATTY	1 cut(s)	372
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.