Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000321.1

Orthogroup ID

OG0006427

Physical Location & Seq

Genomic Coordinates Forward (+)

11290 .. 13317

Gene Structure 2028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000321.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgagcccagcttggcaggtgaagaaactgagggagttttgcaaggcaaaagggaaacatgtcacagcttactctccactgggtgcatctgggacttcatggggagacgataggggtttaggctcacaagtcctccaacagattgccaaagcaaaagggaaaacaactgcgcaggtggctcgcttctccgtcaacatcaacgtcctccgccgcaaggatttccgggactacgagtccttcatcgtccaatggggggtgagttgttgtcaactggggatgaaggggattagacgacaaaggaaaaaagaagaagaagaaggaaccgggacaacgaacagaggaggagaaagggagagaagaaaagaaaataagaagatgggaagggagaaagagatagagattttgggctcgactaaaaggagacccaagcctactcagatctcgcctcctaatctcgcagctatatctaaagctcgcttctccgtcaacatcaacgtcctccgccgcaaggatttcagggactacgagtccttcatcgtccaatggggggtgagttgttgtcaactggggatgaaggggattagacgagaaaggaaaaaagaagaagaagaaggaaccgggacaacgaacagaggaggagaaagggagagaagaaaagaaaataagaagatgggaagggagaaagagatagagattttcggctcgatgatgagtcggtcttatggagagtttctattctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 map00053

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

246

Amino Acids

28.25

Weight (kDa)

10.19

Isoelectric Point (pI)

60.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006427)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0414911 RchiOBHm_Chr4g0425011
rosa_laevigata	RLG00000001467 RLG00000023395 RLG00000031447 RLG00000034760
rosa_multiflora	Rmu_sc0000321.1_g000004 Rmu_sc0003921.1_g000012 Rmu_sc0032413.1_g000001 Rmu_sc0036978.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151150 Rroxscaffold_3G00257780 Rroxscaffold_4G00282760 Rroxscaffold_4G00295240 Rroxscaffold_4G00316850 Rroxscaffold_5G00343780
rosa_samantha	Rh1AG079100 Rh2BG126800 Rh3CG293900 Rh3DG288300 Rh5AG378800 Rh5BG350000 Rh6AG284800 Rh6BG298800 Rh6CG115900 Rh7DG284600
rosa_wichuraiana	Rw5G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	7, 163
Acc16I	TGCGCA	1 cut(s)	171
Acc36I	ACCTGC	2 cut(s)	7, 163
AciI	CCGC	4 cut(s)	208, 211, 502, 505
AdeI	CACNNNGTG	1 cut(s)	83
AfiI	CCNNNNNNNGG	4 cut(s)	214, 253, 508, 547
AflIII	ACRYGT	1 cut(s)	58
AhdI	GACNNNNNGTC	2 cut(s)	232, 526
AluBI	AGCT	4 cut(s)	11, 68, 461, 473
AluI	AGCT	4 cut(s)	11, 68, 461, 473
Alw26I	GTCTC	2 cut(s)	99, 415
ApeKI	GCWGC	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	172
AsuC2I	CCSGG	3 cut(s)	224, 325, 619
AsuHPI	GGTGA	3 cut(s)	31, 268, 562
BanII	GRGCYC	2 cut(s)	8, 410
BbvI	GCAGC	1 cut(s)	470
BccI	CCATC	2 cut(s)	370, 664
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BcnI	CCSGG	3 cut(s)	224, 325, 619
BcoDI	GTCTC	2 cut(s)	99, 415
BfuAI	ACCTGC	2 cut(s)	7, 163
BglII	AGATCT	1 cut(s)	438
BisI	GCNGC	3 cut(s)	211, 459, 505
BlsI	GCNGC	3 cut(s)	212, 460, 506
Bme1390I	CCNGG	3 cut(s)	224, 325, 619
BmeRI	GACNNNNNGTC	2 cut(s)	232, 526
BmiI	GGNNCC	2 cut(s)	322, 616
BmrFI	CCNGG	3 cut(s)	224, 325, 619
BmrI	ACTGGG	3 cut(s)	89, 281, 575
BmsI	GCATC	1 cut(s)	95
BmuI	ACTGGG	3 cut(s)	89, 281, 575
BpuMI	CCSGG	3 cut(s)	224, 325, 619
BsaI	GGTCTC	1 cut(s)	415
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	4 cut(s)	214, 253, 508, 547
Bse1I	ACTGG	3 cut(s)	84, 276, 570
BseGI	GGATG	2 cut(s)	282, 576
BseLI	CCNNNNNNNGG	4 cut(s)	214, 253, 508, 547
BseMII	CTCAG	2 cut(s)	20, 449
BseNI	ACTGG	3 cut(s)	84, 276, 570
BseRI	GAGGAG	4 cut(s)	354, 357, 648, 651
BseXI	GCAGC	1 cut(s)	470
BseYI	CCCAGC	1 cut(s)	7
BsiSI	CCGG	3 cut(s)	223, 324, 618
BslFI	GGGAC	5 cut(s)	106, 239, 340, 533, 634
BslI	CCNNNNNNNGG	4 cut(s)	214, 253, 508, 547
BsmAI	GTCTC	2 cut(s)	99, 415
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	5 cut(s)	106, 239, 340, 533, 634
Bso31I	GGTCTC	1 cut(s)	415
Bsp1286I	GDGCHC	2 cut(s)	8, 410
Bsp143I	GATC	1 cut(s)	438
BspACI	CCGC	4 cut(s)	208, 211, 502, 505
BspCNI	CTCAG	2 cut(s)	21, 448
BspLI	GGNNCC	2 cut(s)	322, 616
BspMI	ACCTGC	2 cut(s)	7, 163
BspTNI	GGTCTC	1 cut(s)	415
BsrI	ACTGG	3 cut(s)	84, 276, 570
BssMI	GATC	1 cut(s)	438
BstC8I	GCNNGC	2 cut(s)	181, 475
BstDEI	CTNAG	2 cut(s)	29, 435
BstF5I	GGATG	2 cut(s)	282, 576
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	1 cut(s)	441
BstMAI	GTCTC	2 cut(s)	99, 415
BstMBI	GATC	1 cut(s)	438
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	62
BstSCI	CCNGG	3 cut(s)	222, 323, 617
BstV1I	GCAGC	1 cut(s)	470
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
BtsCI	GGATG	2 cut(s)	282, 576
BtsIMutI	CAGTG	1 cut(s)	77
BveI	ACCTGC	2 cut(s)	7, 163
Cac8I	GCNNGC	2 cut(s)	181, 475
CfoI	GCGC	1 cut(s)	172
CviAII	CATG	2 cut(s)	59, 99
DdeI	CTNAG	2 cut(s)	29, 435
DpnI	GATC	1 cut(s)	440
DpnII	GATC	1 cut(s)	438
DraIII	CACNNNGTG	1 cut(s)	83
DriI	GACNNNNNGTC	2 cut(s)	232, 526
Eam1105I	GACNNNNNGTC	2 cut(s)	232, 526
EciI	GGCGGA	2 cut(s)	197, 491
Eco24I	GRGCYC	2 cut(s)	8, 410
Eco31I	GGTCTC	1 cut(s)	415
EcoT38I	GRGCYC	2 cut(s)	8, 410
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	2 cut(s)	62, 102
FaiI	YATR	4 cut(s)	60, 100, 464, 723
FaqI	GGGAC	5 cut(s)	106, 239, 340, 533, 634
FatI	CATG	2 cut(s)	58, 98
Fnu4HI	GCNGC	3 cut(s)	211, 459, 505
FokI	GGATG	2 cut(s)	289, 583
FriOI	GRGCYC	2 cut(s)	8, 410
Fsp4HI	GCNGC	3 cut(s)	211, 459, 505
FspI	TGCGCA	1 cut(s)	171
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	3 cut(s)	211, 459, 505
GsaI	CCCAGC	1 cut(s)	11
HapII	CCGG	3 cut(s)	223, 324, 618
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	2 cut(s)	62, 102
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HincII	GTYRAC	4 cut(s)	193, 269, 487, 563
HindII	GTYRAC	4 cut(s)	193, 269, 487, 563
HinfI	GANTC	3 cut(s)	233, 527, 712
HpaII	CCGG	3 cut(s)	223, 324, 618
HphI	GGTGA	3 cut(s)	31, 268, 562
Hpy166II	GTNNAC	4 cut(s)	193, 269, 487, 563
Hpy188I	TCNGA	1 cut(s)	438
Hpy8I	GTNNAC	4 cut(s)	193, 269, 487, 563
HpyAV	CCTTC	8 cut(s)	247, 274, 311, 375, 541, 568, 605, 669
HpyCH4IV	ACGT	2 cut(s)	201, 495
HpyCH4V	TGCA	2 cut(s)	42, 86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	2 cut(s)	29, 435
HpySE526I	ACGT	2 cut(s)	201, 495
Hsp92II	CATG	2 cut(s)	62, 102
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	438
Lsp1109I	GCAGC	1 cut(s)	470
LweI	GCATC	1 cut(s)	95
MaeII	ACGT	2 cut(s)	201, 495
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	440
MboI	GATC	1 cut(s)	438
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	2 cut(s)	8, 410
MlyI	GAGTC	3 cut(s)	242, 536, 721
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	9 cut(s)	24, 143, 215, 332, 335, 456, 509, 626, 629
MspI	CCGG	3 cut(s)	223, 324, 618
MspR9I	CCNGG	3 cut(s)	224, 325, 619
MwoI	GCNNNNNNNGC	1 cut(s)	176
NciI	CCSGG	3 cut(s)	224, 325, 619
NdeII	GATC	1 cut(s)	438
NlaIII	CATG	2 cut(s)	62, 102
NlaIV	GGNNCC	2 cut(s)	322, 616
NmuCI	GTSAC	1 cut(s)	61
NsbI	TGCGCA	1 cut(s)	171
NspI	RCATGY	1 cut(s)	62
PaqCI	CACCTGC	2 cut(s)	7, 163
PciI	ACATGT	1 cut(s)	58
PfoI	TCCNGGA	1 cut(s)	222
PkrI	GCNGC	3 cut(s)	212, 460, 506
PleI	GAGTC	3 cut(s)	241, 535, 720
PpsI	GAGTC	3 cut(s)	241, 535, 720
PscI	ACATGT	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	322, 616
PsuI	RGATCY	1 cut(s)	438
SatI	GCNGC	3 cut(s)	211, 459, 505
Sau3AI	GATC	1 cut(s)	438
SchI	GAGTC	3 cut(s)	242, 536, 721
ScrFI	CCNGG	3 cut(s)	224, 325, 619
SduI	GDGCHC	2 cut(s)	8, 410
SetI	ASST	8 cut(s)	13, 21, 70, 177, 204, 463, 475, 498
SfaNI	GCATC	1 cut(s)	95
SsiI	CCGC	4 cut(s)	208, 211, 502, 505
StyD4I	CCNGG	3 cut(s)	222, 323, 617
TaiI	ACGT	2 cut(s)	204, 498
TaqI	TCGA	2 cut(s)	410, 704
TaqII	GACCGA	1 cut(s)	705
TauI	GCSGC	2 cut(s)	213, 507
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	5 cut(s)	87, 229, 293, 523, 587
TspGWI	ACGGA	2 cut(s)	178, 472
TspRI	CASTG	1 cut(s)	84
XceI	RCATGY	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.