Rh1AG079100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0006427
Physical Location & Seq
Forward (+)
13284649 .. 13300157
15509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG079100.1

Sequence Viewer

Length: 342 bp
ATGAGCTTCTCAATCTGGATCTGGCATATCGCTGGACCATCAACCATCGTCTTCTCTTTTTCCTGCACTTTCCCTCACACTTTCAGATTGACTTTCCATGCCGAGTTCAGTCCCTCTGATATCTATTTAGATCGCCATGGATTCTTCTTTTCAAAACCAAAGAAGGCTACTTTTCTACTGTCATCGCACAGAGTTGGTATTCAAGATTATGAATTTCCTGAAGCCAAGCTCAGGTGCTGTAACTGCATAGCTCCGGTGGCCTACAGCTCCGCCAGGTATGGATATACTGGTAGTTGGGGTCAAGAAGCATGGGGTGTGGCTTTTAGCGTAAAATGTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.91

Weight (kDa)

8.9

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 270
AclWI GGATC 1 cut(s) 26
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 231
AgsI TTSAA 2 cut(s) 153, 203
AjnI CCWGG 1 cut(s) 272
AluBI AGCT 4 cut(s) 6, 229, 251, 267
AluI AGCT 4 cut(s) 6, 229, 251, 267
AlwI GGATC 1 cut(s) 26
AlwNI CAGNNNCTG 1 cut(s) 237
AoxI GGCC 1 cut(s) 258
ApoI RAATTY 1 cut(s) 212
AspS9I GGNCC 1 cut(s) 35
AvaII GGWCC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 43
BccI CCATC 2 cut(s) 46, 53
BciT130I CCWGG 1 cut(s) 274
BfmI CTRYAG 1 cut(s) 262
Bme1390I CCNGG 1 cut(s) 274
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 43
Bpu10I CCTNAGC 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 136
BsaWI WCCGGW 1 cut(s) 253
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse1I ACTGG 1 cut(s) 292
BseBI CCWGG 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 244
BseNI ACTGG 1 cut(s) 292
BsgI GTGCAG 1 cut(s) 49
BshFI GGCC 1 cut(s) 260
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 1 cut(s) 260
Bsp143I GATC 2 cut(s) 18, 130
Bsp19I CCATGG 1 cut(s) 136
BspACI CCGC 1 cut(s) 270
BspANI GGCC 1 cut(s) 260
BspCNI CTCAG 1 cut(s) 243
BspPI GGATC 1 cut(s) 26
BsrI ACTGG 1 cut(s) 292
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 2 cut(s) 18, 130
BssT1I CCWWGG 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 274
Bst4CI ACNGT 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 230
BstDSI CCRYGG 1 cut(s) 136
BstKTI GATC 2 cut(s) 21, 133
BstMBI GATC 2 cut(s) 18, 130
BstMWI GCNNNNNNNGC 2 cut(s) 243, 257
BstNI CCWGG 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 262
BstV2I GAAGAC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BsuRI GGCC 1 cut(s) 260
BtgI CCRYGG 1 cut(s) 136
BtgZI GCGATG 1 cut(s) 168
CaiI CAGNNNCTG 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 35
CviAII CATG 3 cut(s) 98, 137, 309
CviJI RGCY 8 cut(s) 6, 167, 224, 229, 251, 260, 267, 320
CviKI_1 RGCY 8 cut(s) 6, 167, 224, 229, 251, 260, 267, 320
DdeI CTNAG 1 cut(s) 230
DpnI GATC 2 cut(s) 20, 132
DpnII GATC 2 cut(s) 18, 130
EciI GGCGGA 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 136
Eco32I GATATC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 272
EcoRV GATATC 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 3 cut(s) 101, 140, 312
FaiI YATR 8 cut(s) 27, 99, 138, 210, 248, 279, 285, 310
FaqI GGGAC 1 cut(s) 96
FatI CATG 3 cut(s) 97, 136, 308
HaeIII GGCC 1 cut(s) 260
HapII CCGG 1 cut(s) 254
Hin1II CATG 3 cut(s) 101, 140, 312
HinfI GANTC 1 cut(s) 141
HpaII CCGG 1 cut(s) 254
Hpy188I TCNGA 2 cut(s) 86, 118
Hpy188III TCNNGA 4 cut(s) 16, 203, 218, 302
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 66, 246
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 257
HpyF3I CTNAG 1 cut(s) 230
Hsp92II CATG 3 cut(s) 101, 140, 312
Kzo9I GATC 2 cut(s) 18, 130
LmnI GCTCC 2 cut(s) 256, 272
LpnPI CCDG 9 cut(s) 7, 18, 76, 217, 231, 259, 267, 273, 286
MaeIII GTNAC 1 cut(s) 239
MalI GATC 2 cut(s) 20, 132
MboI GATC 2 cut(s) 18, 130
MboII GAAGA 2 cut(s) 43, 136
MflI RGATCY 1 cut(s) 18
MluCI AATT 1 cut(s) 212
MnlI CCTC 2 cut(s) 84, 124
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 274
MvaI CCWGG 1 cut(s) 274
MwoI GCNNNNNNNGC 2 cut(s) 243, 257
NcoI CCATGG 1 cut(s) 136
NdeII GATC 2 cut(s) 18, 130
NlaIII CATG 3 cut(s) 101, 140, 312
NmeAIII GCCGAG 1 cut(s) 127
PfeI GAWTC 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
PspPI GGNCC 1 cut(s) 35
PstNI CAGNNNCTG 1 cut(s) 237
PsuI RGATCY 1 cut(s) 18
Sau3AI GATC 2 cut(s) 18, 130
Sau96I GGNCC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 274
SetI ASST 6 cut(s) 8, 231, 236, 253, 269, 278
SfcI CTRYAG 1 cut(s) 262
SinI GGWCC 1 cut(s) 35
Sse9I AATT 1 cut(s) 212
SsiI CCGC 1 cut(s) 270
StyD4I CCNGG 1 cut(s) 272
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 180
TasI AATT 1 cut(s) 212
TfiI GAWTC 1 cut(s) 141
TspDTI ATGAA 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 35
XapI RAATTY 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.