Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006427

Physical Location & Seq

Genomic Coordinates Forward (+)

41775247 .. 41778865

Gene Structure 3619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00316850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGCCCACTCAGATCTCGCCTCCTAATCTCGCAGCTATGTCTAAAACTCGCGTCGCCGTCGACATCAACGTCCTCCGTCGCAAGGATTTTCGGGACTACGAGTCCTTCATTGTCCAATGGGGGGGATTAGACGAGAAAGGAAAAAAGAAGAAGAAGAAGGAACAAGGACAACGAACAAAGGAGGAGAAAGGGAGAGAAGAAAAGAAAAGAAGAAGATGGGAAGGGAGAAAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005956 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0031974 GO:0031981 GO:0032991 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

78

Amino Acids

9.34

Weight (kDa)

10.54

Isoelectric Point (pI)

73.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006427)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0414911 RchiOBHm_Chr4g0425011
rosa_laevigata	RLG00000001467 RLG00000023395 RLG00000031447 RLG00000034760
rosa_multiflora	Rmu_sc0000321.1_g000004 Rmu_sc0003921.1_g000012 Rmu_sc0032413.1_g000001 Rmu_sc0036978.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151150 Rroxscaffold_3G00257780 Rroxscaffold_4G00282760 Rroxscaffold_4G00295240 Rroxscaffold_4G00316850 Rroxscaffold_5G00343780
rosa_samantha	Rh1AG079100 Rh2BG126800 Rh3CG293900 Rh3DG288300 Rh5AG378800 Rh5BG350000 Rh6AG284800 Rh6BG298800 Rh6CG115900 Rh7DG284600
rosa_wichuraiana	Rw5G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	1 cut(s)	51
AfiI	CCNNNNNNNGG	2 cut(s)	82, 121
AhdI	GACNNNNNGTC	1 cut(s)	100
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	1 cut(s)	210
BceAI	ACGGC	1 cut(s)	41
BglII	AGATCT	1 cut(s)	12
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BmeRI	GACNNNNNGTC	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 121
BseLI	CCNNNNNNNGG	2 cut(s)	82, 121
BseMII	CTCAG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	44
Bsh1236I	CGCG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	2 cut(s)	82, 121
BsmFI	GGGAC	1 cut(s)	107
Bsp143I	GATC	1 cut(s)	12
BspCNI	CTCAG	1 cut(s)	22
BspFNI	CGCG	1 cut(s)	51
BssMI	GATC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	9
BstFNI	CGCG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
CseI	GACGC	1 cut(s)	40
CviJI	RGCY	1 cut(s)	35
CviKI_1	RGCY	1 cut(s)	35
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
DrdI	GACNNNNNNGTC	1 cut(s)	68
DriI	GACNNNNNGTC	1 cut(s)	100
DseDI	GACNNNNNNGTC	1 cut(s)	68
Eam1105I	GACNNNNNGTC	1 cut(s)	100
FaiI	YATR	1 cut(s)	38
FaqI	GGGAC	1 cut(s)	107
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	33
HgaI	GACGC	1 cut(s)	40
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	1 cut(s)	92
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	3 cut(s)	56, 62, 81
HpyAV	CCTTC	3 cut(s)	115, 151, 215
HpyCH4IV	ACGT	1 cut(s)	69
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	12
Lsp1109I	GCAGC	1 cut(s)	44
MaeII	ACGT	1 cut(s)	69
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	6 cut(s)	160, 163, 166, 209, 222, 225
MflI	RGATCY	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	3 cut(s)	30, 83, 175
MvnI	CGCG	1 cut(s)	51
NdeII	GATC	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	12
SalI	GTCGAC	1 cut(s)	59
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	110
SetI	ASST	2 cut(s)	37, 72
SgeI	CNNG	9 cut(s)	28, 41, 60, 62, 94, 104, 112, 145, 176
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	1 cut(s)	60
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	1 cut(s)	97
TspGWI	ACGGA	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.