Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006427

Physical Location & Seq

Genomic Coordinates Forward (+)

64698029 .. 64699357

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG378800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTCTAAAGCTCACGTCTCCATCGACATCAACGTCCTCCGCCGCAAGGATTTCCGGGACTACGAGTCCTTCATCGTCCAATGGGGATTGAAACTTTCACATAAGGGTTTCTATACTAGTGCAGCTGCTAAAGTCTCCAGCTCCAATGGTGCTCAACCAAGCAATGATCATGTGGCACAACAGAAATCTTCAAATAAAAGTGAACCGTATGACATTGCTATTGTTGGAGGAGGCATGGTTGGCATGGCCCTAGCTAGTTCCTTGGGTAGTTGGTCTTTTATAGTGGATAGACTGATGAACTGGCTGGTTACTTTTGTTGTGCAGTTTGTTATCTGCAGATTTCTACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

DUF1232 FAD_binding_3

Protein Analysis

116

Amino Acids

12.87

Weight (kDa)

9.46

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006427)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0414911 RchiOBHm_Chr4g0425011
rosa_laevigata	RLG00000001467 RLG00000023395 RLG00000031447 RLG00000034760
rosa_multiflora	Rmu_sc0000321.1_g000004 Rmu_sc0003921.1_g000012 Rmu_sc0032413.1_g000001 Rmu_sc0036978.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151150 Rroxscaffold_3G00257780 Rroxscaffold_4G00282760 Rroxscaffold_4G00295240 Rroxscaffold_4G00316850 Rroxscaffold_5G00343780
rosa_samantha	Rh1AG079100 Rh2BG126800 Rh3CG293900 Rh3DG288300 Rh5AG378800 Rh5BG350000 Rh6AG284800 Rh6BG298800 Rh6CG115900 Rh7DG284600
rosa_wichuraiana	Rw5G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AciI	CCGC	2 cut(s)	40, 43
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	2 cut(s)	91, 192
AhdI	GACNNNNNGTC	1 cut(s)	64
AhlI	ACTAGT	1 cut(s)	116
AjiI	CACGTC	1 cut(s)	16
AluBI	AGCT	4 cut(s)	11, 125, 141, 254
AluI	AGCT	4 cut(s)	11, 125, 141, 254
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	2 cut(s)	22, 139
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	2 cut(s)	122, 125
AspS9I	GGNCC	1 cut(s)	247
AsuC2I	CCSGG	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	2 cut(s)	112, 134
BccI	CCATC	1 cut(s)	29
BclI	TGATCA	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	2 cut(s)	22, 139
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	3 cut(s)	117, 251, 255
BfmI	CTRYAG	2 cut(s)	334, 344
BisI	GCNGC	3 cut(s)	43, 123, 126
BlsI	GCNGC	3 cut(s)	44, 124, 127
Bme1390I	CCNGG	1 cut(s)	56
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmgBI	CACGTC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	247
BmrFI	CCNGG	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	121
BpuMI	CCSGG	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	261
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	305
Bse3DI	GCAATG	2 cut(s)	169, 213
BseDI	CCNNGG	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMI	GCAATG	2 cut(s)	169, 213
BseNI	ACTGG	1 cut(s)	305
BseRI	GAGGAG	1 cut(s)	243
BseXI	GCAGC	2 cut(s)	112, 134
BsgI	GTGCAG	2 cut(s)	141, 341
BshFI	GGCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	55
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	2 cut(s)	22, 139
BsmBI	CGTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	2 cut(s)	40, 43
BspANI	GGCC	1 cut(s)	248
BspMAI	CTGCAG	1 cut(s)	338
BsrDI	GCAATG	2 cut(s)	169, 213
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	261
Bst4CI	ACNGT	2 cut(s)	207, 348
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	2 cut(s)	22, 139
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	2 cut(s)	334, 344
BstV1I	GCAGC	2 cut(s)	112, 134
BsuRI	GGCC	1 cut(s)	248
BtrI	CACGTC	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	247
CviAII	CATG	3 cut(s)	170, 235, 244
CviJI	RGCY	6 cut(s)	11, 125, 141, 248, 254, 304
CviKI_1	RGCY	6 cut(s)	11, 125, 141, 248, 254, 304
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
DrdI	GACNNNNNNGTC	1 cut(s)	32
DriI	GACNNNNNGTC	1 cut(s)	64
DseDI	GACNNNNNNGTC	1 cut(s)	32
Eam1105I	GACNNNNNGTC	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	3 cut(s)	173, 238, 247
FaiI	YATR	7 cut(s)	102, 114, 171, 210, 236, 245, 281
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	3 cut(s)	169, 234, 243
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	3 cut(s)	43, 123, 126
Fsp4HI	GCNGC	3 cut(s)	43, 123, 126
FspBI	CTAG	3 cut(s)	117, 251, 255
GluI	GCNGC	3 cut(s)	43, 123, 126
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	1 cut(s)	55
Hin1II	CATG	3 cut(s)	173, 238, 247
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	203
Hpy8I	GTNNAC	1 cut(s)	203
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	2 cut(s)	207, 348
HpyCH4IV	ACGT	2 cut(s)	15, 33
HpyCH4V	TGCA	3 cut(s)	122, 322, 336
HpyF10VI	GCNNNNNNNGC	1 cut(s)	240
HpySE526I	ACGT	2 cut(s)	15, 33
Hsp92II	CATG	3 cut(s)	173, 238, 247
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	4 cut(s)	68, 151, 286, 290
Lsp1109I	GCAGC	2 cut(s)	112, 134
MaeI	CTAG	3 cut(s)	117, 251, 255
MaeII	ACGT	2 cut(s)	15, 33
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	154
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	3 cut(s)	47, 221, 224
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	240
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	3 cut(s)	173, 238, 247
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 30
PfoI	TCCNGGA	1 cut(s)	54
PkrI	GCNGC	3 cut(s)	44, 124, 127
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	125
SatI	GCNGC	3 cut(s)	43, 123, 126
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	6 cut(s)	13, 18, 36, 127, 143, 256
SfcI	CTRYAG	2 cut(s)	334, 344
SpeI	ACTAGT	1 cut(s)	116
SsiI	CCGC	2 cut(s)	40, 43
SspMI	CTAG	3 cut(s)	117, 251, 255
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	2 cut(s)	207, 348
TaiI	ACGT	2 cut(s)	18, 36
TaqI	TCGA	1 cut(s)	24
TauI	GCSGC	1 cut(s)	45
TseI	GCWGC	2 cut(s)	122, 125
TspDTI	ATGAA	2 cut(s)	61, 311
XspI	CTAG	3 cut(s)	117, 251, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.