Rmu_sc0003921.1_g000012

casein kinase ii

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003921.1
Physical Location & Seq
Reverse (-)
58040 .. 60118
2079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003921.1_g000012.1.cds

Sequence Viewer

Length: 1176 bp
atgtctaaagctcacgtcgccgtcgacatcaacgtcctccaccgcaaggatttttgggactacgagtccttcatcgtccaatggggccatggggatgagaaaggaaaaaagaagaagaagaaggaacaaggacaacgaacagaggaggagaaagggagagaagaaaagaaaagaaaagaagaagatgggaagggtgtttatacctacactagcaagctagttctctacatcaccaagcataacattaacattggcgccgtctgtgggaagccgacacacaaaggcttcgtcacctaccacgaacttcgacccgaaagtatcgagtcaacgctcattcaacatcaaataggggccggtcaacgcccggcggggtcggtcaacgcccggcggaagcggtcaacgcccaacatggctggtcaacgcccatcagggccggtcaacgtctggtcaaccctgaccaagtccgctgggcttgtgcaagcttctcctctaagcttcatcagcgggaaacaaggcaccgctaatctccatcagcagcagttcttccgctcagcttcaccagcggcacataccaccggtcatcaagctcctctccgtaccacatgttttagcaatcacagcaaaaccgagcatcaactttatctctgctcctctccgacggaaaatcttccgccacactgttcaccgcccaacttcaaagctccgctagagcaccatcagcgtttactctggacacccagagatctcctctgggcacgctgctgcacttgctcttccgctccgccaagctgctccaccgctgaactctcctccgctgaccatcttgacccaccgggcaaagcctcctccgataagcttcatcagcgggaaaattctccgctaggcttcgtcagccggaaacaaagctcctctagatatccatcagcggcaccactgaccttcaccgctaggagccaccactggctaaggcgccaaagctccgctgaacaccaagtctgtgctaccgctaactgtacaccgccaaacttgggtgttcttgctgcgtcaagtcgtcacgtcaggagaggctggcaagggagatccattaacgatggggactcggtcgactactcgatcatcaatcttcaccacgtcatggctgtcaccatccatttcacctcctttcatctgctctag

Protein Analysis

391

Amino Acids

43.52

Weight (kDa)

9.66

Isoelectric Point (pI)

57.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
AccB1I GGYRCC 4 cut(s) 254, 515, 928, 969
AccB7I CCANNNNNTGG 1 cut(s) 1135
AccBSI CCGCTC 2 cut(s) 549, 779
AccI GTMKAC 2 cut(s) 24, 1104
AclWI GGATC 1 cut(s) 1074
AcsI RAATTY 1 cut(s) 871
AcyI GRCGYC 2 cut(s) 255, 970
AfaI GTAC 2 cut(s) 598, 1015
AfiI CCNNNNNNNGG 4 cut(s) 46, 264, 1028, 1135
AflIII ACRYGT 1 cut(s) 602
AgeI ACCGGT 1 cut(s) 575
AgsI TTSAA 2 cut(s) 338, 697
AhdI GACNNNNNGTC 1 cut(s) 64
AjiI CACGTC 3 cut(s) 16, 1057, 1132
Alw21I GWGCWC 1 cut(s) 714
AlwI GGATC 1 cut(s) 1074
AoxI GGCC 3 cut(s) 85, 351, 431
ApeKI GCWGC 5 cut(s) 535, 759, 762, 789, 1040
ApoI RAATTY 1 cut(s) 871
ArsI GACNNNNNNTTYG 2 cut(s) 273, 305
AsiGI ACCGGT 1 cut(s) 575
Asp700I GAANNNNTTC 1 cut(s) 666
AspLEI GCGC 2 cut(s) 257, 972
AspS9I GGNCC 3 cut(s) 85, 351, 431
AsuC2I CCSGG 3 cut(s) 365, 385, 834
AsuHPI GGTGA 8 cut(s) 223, 283, 549, 675, 934, 1118, 1135, 1147
BaeGI GKGCMC 1 cut(s) 757
BanI GGYRCC 4 cut(s) 254, 515, 928, 969
Bbv12I GWGCWC 1 cut(s) 714
BbvI GCAGC 5 cut(s) 547, 746, 749, 776, 1027
BccI CCATC 8 cut(s) 179, 433, 537, 723, 828, 928, 1085, 1154
BceAI ACGGC 2 cut(s) 5, 242
BcnI CCSGG 3 cut(s) 365, 385, 834
BfaI CTAG 7 cut(s) 210, 218, 707, 881, 912, 948, 1174
BfoI RGCGCY 2 cut(s) 258, 973
BglII AGATCT 1 cut(s) 742
BisI GCNGC 7 cut(s) 536, 564, 760, 763, 790, 927, 1041
BlpI GCTNAGC 1 cut(s) 550
BlsI GCNGC 7 cut(s) 537, 565, 761, 764, 791, 928, 1042
Bme1390I CCNGG 3 cut(s) 365, 385, 834
BmeRI GACNNNNNGTC 1 cut(s) 64
BmgBI CACGTC 3 cut(s) 16, 1057, 1132
BmgT120I GGNCC 3 cut(s) 85, 351, 431
BmiI GGNNCC 7 cut(s) 86, 256, 352, 517, 930, 953, 971
BmrFI CCNGG 3 cut(s) 365, 385, 834
BmsI GCATC 1 cut(s) 640
BplI GAGNNNNNCTC 2 cut(s) 732, 764
Bpu10I CCTNAGC 1 cut(s) 965
Bpu1102I GCTNAGC 1 cut(s) 550
BpuMI CCSGG 3 cut(s) 365, 385, 834
BsaBI GATNNNNATC 1 cut(s) 919
BsaHI GRCGYC 2 cut(s) 255, 970
BsaJI CCNNGG 1 cut(s) 88
BsaWI WCCGGW 1 cut(s) 575
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 264, 1028, 1135
Bse118I RCCGGY 3 cut(s) 353, 433, 575
Bse1I ACTGG 1 cut(s) 965
Bse8I GATNNNNATC 1 cut(s) 919
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 2 cut(s) 100, 1146
BseJI GATNNNNATC 1 cut(s) 919
BseLI CCNNNNNNNGG 4 cut(s) 46, 264, 1028, 1135
BseMII CTCAG 1 cut(s) 564
BseNI ACTGG 1 cut(s) 965
BseRI GAGGAG 9 cut(s) 158, 161, 477, 579, 640, 737, 799, 835, 898
BseSI GKGCMC 1 cut(s) 757
BseXI GCAGC 5 cut(s) 547, 746, 749, 776, 1027
BseYI CCCAGC 1 cut(s) 467
BsgI GTGCAG 1 cut(s) 748
Bsh1285I CGRYCG 1 cut(s) 1104
BshFI GGCC 3 cut(s) 87, 353, 433
BshNI GGYRCC 4 cut(s) 254, 515, 928, 969
BshTI ACCGGT 1 cut(s) 575
BsiEI CGRYCG 1 cut(s) 1104
BsiHKAI GWGCWC 1 cut(s) 714
BsiSI CCGG 7 cut(s) 354, 365, 385, 434, 576, 833, 895
BslFI GGGAC 2 cut(s) 71, 1109
BslI CCNNNNNNNGG 4 cut(s) 46, 264, 1028, 1135
BsmFI GGGAC 2 cut(s) 71, 1109
BsnI GGCC 3 cut(s) 87, 353, 433
Bsp1286I GDGCHC 2 cut(s) 714, 757
Bsp1407I TGTACA 1 cut(s) 1013
Bsp143I GATC 3 cut(s) 742, 1079, 1113
Bsp1720I GCTNAGC 1 cut(s) 550
Bsp19I CCATGG 1 cut(s) 88
BspANI GGCC 3 cut(s) 87, 353, 433
BspCNI CTCAG 1 cut(s) 563
BspLI GGNNCC 7 cut(s) 86, 256, 352, 517, 930, 953, 971
BspPI GGATC 1 cut(s) 1074
BspQI GCTCTTC 1 cut(s) 778
BspT107I GGYRCC 4 cut(s) 254, 515, 928, 969
BsrBI CCGCTC 2 cut(s) 549, 779
BsrFI RCCGGY 3 cut(s) 353, 433, 575
BsrGI TGTACA 1 cut(s) 1013
BsrI ACTGG 1 cut(s) 965
BssAI RCCGGY 3 cut(s) 353, 433, 575
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 3 cut(s) 742, 1079, 1113
BssNI GRCGYC 2 cut(s) 255, 970
BssT1I CCWWGG 1 cut(s) 88
Bst4CI ACNGT 2 cut(s) 680, 1013
Bst6I CTCTTC 1 cut(s) 778
BstACI GRCGYC 2 cut(s) 255, 970
BstAUI TGTACA 1 cut(s) 1013
BstC8I GCNNGC 4 cut(s) 215, 480, 757, 1070
BstDEI CTNAG 3 cut(s) 491, 550, 965
BstDSI CCRYGG 1 cut(s) 88
BstF5I GGATG 2 cut(s) 100, 1146
BstH2I RGCGCY 2 cut(s) 258, 973
BstHHI GCGC 2 cut(s) 257, 972
BstKTI GATC 3 cut(s) 745, 1082, 1116
BstMBI GATC 3 cut(s) 742, 1079, 1113
BstMCI CGRYCG 1 cut(s) 1104
BstMWI GCNNNNNNNGC 9 cut(s) 17, 400, 501, 560, 618, 718, 768, 862, 891
BstNSI RCATGY 1 cut(s) 606
BstSCI CCNGG 3 cut(s) 363, 383, 832
BstSLI GKGCMC 1 cut(s) 757
BstV1I GCAGC 5 cut(s) 547, 746, 749, 776, 1027
BstX2I RGATCY 2 cut(s) 742, 1079
BstYI RGATCY 2 cut(s) 742, 1079
BsuRI GGCC 3 cut(s) 87, 353, 433
BtgI CCRYGG 1 cut(s) 88
BtrI CACGTC 3 cut(s) 16, 1057, 1132
BtsCI GGATG 2 cut(s) 100, 1146
BtsIMutI CAGTG 3 cut(s) 676, 932, 958
Cac8I GCNNGC 4 cut(s) 215, 480, 757, 1070
CfoI GCGC 2 cut(s) 257, 972
Cfr10I RCCGGY 3 cut(s) 353, 433, 575
Cfr13I GGNCC 3 cut(s) 85, 351, 431
CseI GACGC 1 cut(s) 1032
Csp6I GTAC 2 cut(s) 597, 1014
CspAI ACCGGT 1 cut(s) 575
CviAII CATG 4 cut(s) 89, 409, 603, 1135
CviQI GTAC 2 cut(s) 597, 1014
DdeI CTNAG 3 cut(s) 491, 550, 965
DinI GGCGCC 2 cut(s) 256, 971
DpnI GATC 3 cut(s) 744, 1081, 1115
DpnII GATC 3 cut(s) 742, 1079, 1113
DrdI GACNNNNNNGTC 1 cut(s) 32
DriI GACNNNNNGTC 1 cut(s) 64
DseDI GACNNNNNNGTC 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 778
Eam1105I GACNNNNNGTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 778
EciI GGCGGA 3 cut(s) 403, 660, 771
Eco130I CCWWGG 1 cut(s) 88
Eco32I GATATC 1 cut(s) 917
EcoRV GATATC 1 cut(s) 917
EcoT14I CCWWGG 1 cut(s) 88
EgeI GGCGCC 2 cut(s) 256, 971
EheI GGCGCC 2 cut(s) 256, 971
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 4 cut(s) 92, 412, 606, 1138
FaiI YATR 7 cut(s) 90, 201, 240, 410, 570, 604, 1136
FaqI GGGAC 2 cut(s) 71, 1109
FatI CATG 4 cut(s) 88, 408, 602, 1134
FauI CCCGC 3 cut(s) 361, 497, 858
FblI GTMKAC 2 cut(s) 24, 1104
Fnu4HI GCNGC 7 cut(s) 536, 564, 760, 763, 790, 927, 1041
FokI GGATG 2 cut(s) 107, 1133
Fsp4HI GCNGC 7 cut(s) 536, 564, 760, 763, 790, 927, 1041
FspBI CTAG 7 cut(s) 210, 218, 707, 881, 912, 948, 1174
GlaI GCGC 2 cut(s) 256, 971
GluI GCNGC 7 cut(s) 536, 564, 760, 763, 790, 927, 1041
GsaI CCCAGC 1 cut(s) 471
HaeII RGCGCY 2 cut(s) 258, 973
HaeIII GGCC 3 cut(s) 87, 353, 433
HapII CCGG 7 cut(s) 354, 365, 385, 434, 576, 833, 895
HgaI GACGC 1 cut(s) 1032
HhaI GCGC 2 cut(s) 257, 972
Hin1I GRCGYC 2 cut(s) 255, 970
Hin1II CATG 4 cut(s) 92, 412, 606, 1138
Hin6I GCGC 2 cut(s) 255, 970
HinP1I GCGC 2 cut(s) 255, 970
HincII GTYRAC 9 cut(s) 25, 327, 359, 379, 399, 419, 439, 450, 1105
HindII GTYRAC 9 cut(s) 25, 327, 359, 379, 399, 419, 439, 450, 1105
HindIII AAGCTT 3 cut(s) 480, 493, 854
HinfI GANTC 3 cut(s) 65, 323, 1097
HpaII CCGG 7 cut(s) 354, 365, 385, 434, 576, 833, 895
HphI GGTGA 8 cut(s) 223, 283, 549, 675, 934, 1118, 1135, 1147
Hpy188I TCNGA 2 cut(s) 657, 850
Hpy188III TCNNGA 4 cut(s) 730, 824, 912, 1060
Hpy99I CGWCG 3 cut(s) 20, 26, 661
HpyAV CCTTC 4 cut(s) 79, 115, 184, 949
HpyCH4III ACNGT 2 cut(s) 680, 1013
HpyCH4IV ACGT 5 cut(s) 15, 33, 441, 1056, 1131
HpyCH4V TGCA 2 cut(s) 478, 765
HpyF10VI GCNNNNNNNGC 9 cut(s) 17, 400, 501, 560, 618, 718, 768, 862, 891
HpyF3I CTNAG 3 cut(s) 491, 550, 965
HpySE526I ACGT 5 cut(s) 15, 33, 441, 1056, 1131
Hsp92I GRCGYC 2 cut(s) 255, 970
Hsp92II CATG 4 cut(s) 92, 412, 606, 1138
HspAI GCGC 2 cut(s) 255, 970
KasI GGCGCC 2 cut(s) 254, 969
Kzo9I GATC 3 cut(s) 742, 1079, 1113
LguI GCTCTTC 1 cut(s) 778
LmnI GCTCC 8 cut(s) 592, 653, 706, 784, 797, 911, 951, 983
Lsp1109I GCAGC 5 cut(s) 547, 746, 749, 776, 1027
LweI GCATC 1 cut(s) 640
MaeI CTAG 7 cut(s) 210, 218, 707, 881, 912, 948, 1174
MaeII ACGT 5 cut(s) 15, 33, 441, 1056, 1131
MaeIII GTNAC 3 cut(s) 289, 1052, 1141
MalI GATC 3 cut(s) 744, 1081, 1115
MbiI CCGCTC 2 cut(s) 549, 779
MboI GATC 3 cut(s) 742, 1079, 1113
MflI RGATCY 2 cut(s) 742, 1079
MhlI GDGCHC 2 cut(s) 714, 757
MluCI AATT 1 cut(s) 871
Mly113I GGCGCC 2 cut(s) 255, 970
MlyI GAGTC 3 cut(s) 74, 332, 1091
MmeI TCCRAC 1 cut(s) 680
MroXI GAANNNNTTC 1 cut(s) 666
MseI TTAA 2 cut(s) 246, 1086
MslI CAYNNNNRTG 1 cut(s) 93
MspA1I CMGCKG 8 cut(s) 467, 504, 563, 800, 815, 865, 926, 983
MspI CCGG 7 cut(s) 354, 365, 385, 434, 576, 833, 895
MspR9I CCNGG 3 cut(s) 365, 385, 834
MwoI GCNNNNNNNGC 9 cut(s) 17, 400, 501, 560, 618, 718, 768, 862, 891
NarI GGCGCC 2 cut(s) 255, 970
NciI CCSGG 3 cut(s) 365, 385, 834
NcoI CCATGG 1 cut(s) 88
NdeII GATC 3 cut(s) 742, 1079, 1113
NlaIII CATG 4 cut(s) 92, 412, 606, 1138
NlaIV GGNNCC 7 cut(s) 86, 256, 352, 517, 930, 953, 971
NmuCI GTSAC 3 cut(s) 289, 1052, 1141
NspI RCATGY 1 cut(s) 606
PciI ACATGT 1 cut(s) 602
PciSI GCTCTTC 1 cut(s) 778
PcsI WCGNNNNNNNCGW 2 cut(s) 21, 30
PdmI GAANNNNTTC 1 cut(s) 666
PflFI GACNNNGTC 2 cut(s) 460, 1100
PflMI CCANNNNNTGG 1 cut(s) 1135
PinAI ACCGGT 1 cut(s) 575
PkrI GCNGC 7 cut(s) 537, 565, 761, 764, 791, 928, 1042
PleI GAGTC 3 cut(s) 73, 331, 1091
PluTI GGCGCC 2 cut(s) 258, 973
PpsI GAGTC 3 cut(s) 73, 331, 1091
PscI ACATGT 1 cut(s) 602
PspFI CCCAGC 1 cut(s) 467
PspN4I GGNNCC 7 cut(s) 86, 256, 352, 517, 930, 953, 971
PspPI GGNCC 3 cut(s) 85, 351, 431
PsuI RGATCY 2 cut(s) 742, 1079
PsyI GACNNNGTC 2 cut(s) 460, 1100
RsaI GTAC 2 cut(s) 598, 1015
RsaNI GTAC 2 cut(s) 597, 1014
RseI CAYNNNNRTG 1 cut(s) 93
SalI GTCGAC 2 cut(s) 23, 1103
SapI GCTCTTC 1 cut(s) 778
SaqAI TTAA 2 cut(s) 246, 1086
SatI GCNGC 7 cut(s) 536, 564, 760, 763, 790, 927, 1041
Sau3AI GATC 3 cut(s) 742, 1079, 1113
Sau96I GGNCC 3 cut(s) 85, 351, 431
SchI GAGTC 3 cut(s) 74, 332, 1091
ScrFI CCNGG 3 cut(s) 365, 385, 834
SduI GDGCHC 2 cut(s) 714, 757
SfaNI GCATC 1 cut(s) 640
SfoI GGCGCC 2 cut(s) 256, 971
SmiMI CAYNNNNRTG 1 cut(s) 93
Sse9I AATT 1 cut(s) 871
SspDI GGCGCC 2 cut(s) 254, 969
SspMI CTAG 7 cut(s) 210, 218, 707, 881, 912, 948, 1174
StyD4I CCNGG 3 cut(s) 363, 383, 832
StyI CCWWGG 1 cut(s) 88
TaaI ACNGT 2 cut(s) 680, 1013
TaiI ACGT 5 cut(s) 18, 36, 444, 1059, 1134
TaqI TCGA 5 cut(s) 24, 307, 321, 1104, 1112
TaqII GACCGA 2 cut(s) 364, 1090
TasI AATT 1 cut(s) 871
TatI WGTACW 1 cut(s) 1013
TauI GCSGC 2 cut(s) 566, 929
Tru1I TTAA 2 cut(s) 246, 1086
Tru9I TTAA 2 cut(s) 246, 1086
TscAI CASTG 3 cut(s) 683, 939, 965
TseFI GTSAC 3 cut(s) 289, 1052, 1141
TseI GCWGC 5 cut(s) 535, 759, 762, 789, 1040
Tsp45I GTSAC 3 cut(s) 289, 1052, 1141
TspDTI ATGAA 4 cut(s) 61, 487, 848, 1154
TspGWI ACGGA 2 cut(s) 584, 674
TspRI CASTG 3 cut(s) 683, 939, 965
Tth111I GACNNNGTC 2 cut(s) 460, 1100
Van91I CCANNNNNTGG 1 cut(s) 1135
XapI RAATTY 1 cut(s) 871
XbaI TCTAGA 1 cut(s) 911
XceI RCATGY 1 cut(s) 606
XcmI CCANNNNNNNNNTGG 1 cut(s) 86
XmiI GTMKAC 2 cut(s) 24, 1104
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 7 cut(s) 210, 218, 707, 881, 912, 948, 1174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.