Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036978.1

Orthogroup ID

OG0006427

Physical Location & Seq

Genomic Coordinates Reverse (-)

643 .. 974

Gene Structure 332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036978.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

atgtctaaagctcacgtcgccgtctacatcaatgtcctccaccgcaaggattttcgggactacgagtccttcatcgtccaatggggccatggggatgagaaaggaaaaaagaagaagaagaaggaacaaggacaacgaacagaggaggagaaagggagagaagaaaagaagaagatgggaagggagaaagagatagagattttgggctcgatgatgagttggtcttatggagagcttctgttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005956 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010212 GO:0010225 GO:0010332 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048511 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080134 GO:0080135 GO:0090304 GO:1901360 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

81

Amino Acids

9.66

Weight (kDa)

9.33

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006427)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0414911 RchiOBHm_Chr4g0425011
rosa_laevigata	RLG00000001467 RLG00000023395 RLG00000031447 RLG00000034760
rosa_multiflora	Rmu_sc0000321.1_g000004 Rmu_sc0003921.1_g000012 Rmu_sc0032413.1_g000001 Rmu_sc0036978.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151150 Rroxscaffold_3G00257780 Rroxscaffold_4G00282760 Rroxscaffold_4G00295240 Rroxscaffold_4G00316850 Rroxscaffold_5G00343780
rosa_samantha	Rh1AG079100 Rh2BG126800 Rh3CG293900 Rh3DG288300 Rh5AG378800 Rh5BG350000 Rh6AG284800 Rh6BG298800 Rh6CG115900 Rh7DG284600
rosa_wichuraiana	Rw5G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	24
AciI	CCGC	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	46
AhdI	GACNNNNNGTC	1 cut(s)	64
AjiI	CACGTC	1 cut(s)	16
AluBI	AGCT	2 cut(s)	11, 235
AluI	AGCT	2 cut(s)	11, 235
AoxI	GGCC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	209
BccI	CCATC	1 cut(s)	169
BceAI	ACGGC	1 cut(s)	5
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmgBI	CACGTC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseRI	GAGGAG	2 cut(s)	158, 161
BshFI	GGCC	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	88
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	88
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	85
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	4 cut(s)	11, 87, 207, 235
CviKI_1	RGCY	4 cut(s)	11, 87, 207, 235
DriI	GACNNNNNGTC	1 cut(s)	64
Eam1105I	GACNNNNNGTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	1 cut(s)	92
FaiI	YATR	2 cut(s)	90, 228
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	1 cut(s)	88
FblI	GTMKAC	1 cut(s)	24
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	209
HaeIII	GGCC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	92
HinfI	GANTC	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	3 cut(s)	79, 115, 174
HpyCH4IV	ACGT	1 cut(s)	15
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	15
MboII	GAAGA	6 cut(s)	124, 127, 130, 173, 181, 184
MhlI	GDGCHC	1 cut(s)	209
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	3 cut(s)	47, 136, 139
MslI	CAYNNNNRTG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	88
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	1 cut(s)	86
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	86
PspPI	GGNCC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	93
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	209
SetI	ASST	3 cut(s)	13, 18, 237
SgeI	CNNG	7 cut(s)	26, 58, 68, 76, 101, 140, 220
SmiMI	CAYNNNNRTG	1 cut(s)	93
SsiI	CCGC	1 cut(s)	43
StyI	CCWWGG	1 cut(s)	88
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.