Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006427

Physical Location & Seq

Genomic Coordinates Reverse (-)

48069394 .. 48092382

Gene Structure 22989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG284800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAAGAAGTTGTGGTTATCGGGAAATCCTCGCCAGAGGAGAAGGCGGCTCTGCGAGAGAGATTGCACCGACAATGATCTGCAATCCGAGCCTATCTCTGTCGTCGGAGCTCTGAAGCAGCTCGCTGGAGAAGGTGGCGACGTAAATTCAGGCAAAGAGAGGAGATGCAGCAGGCAGCCGGCCTTCTCAATCTGGATCTGGCATATCGCTGGACCATCAACCATCGTCTTCTCTTTTTCCTGCACTTTCCCTCACACTTTCAGATTGACTTTCCATGCCGAGTTCAGTCCCTCTGATATCTATTTAGATCGCCATGGATTCTTCTTTTCAAAACCAAACAAGGCTACCTTTCTACTGTCATCGCACAGAGTAGGTATTCAAGATTATGAATTTCCTGAAGCCAAGCTCAGGTGCTGTAACTGCATAGCTCTGGTGGCCTACAGCTCCGCCAGGTATGGATATACTGGTAGTTGGGGTCAAGAAGCATGGGGTGTGGCTTTTAGCGAAAAATACGTAATTAATTACCCAAGGCTTGAGCAACAAAGGTGGAAACCCGGAGATTTCTTGAGTATGGATTCCAGCAACGGTAAGGCCTGCAGAGGCACTAACAGCACCAATACTTCTTCGTCAGCGACTCGAAGGTCCTCCAAATCGGGTTCTTCGCCGCCTCGAAGCCCATTGCCTCCTCCCTTCCCGTCTCTTACATTTCCCCCTCCAGTAACTCTCTCTCTCCTGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

27.56

Weight (kDa)

9.55

Isoelectric Point (pI)

67.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006427)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0414911 RchiOBHm_Chr4g0425011
rosa_laevigata	RLG00000001467 RLG00000023395 RLG00000031447 RLG00000034760
rosa_multiflora	Rmu_sc0000321.1_g000004 Rmu_sc0003921.1_g000012 Rmu_sc0032413.1_g000001 Rmu_sc0036978.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151150 Rroxscaffold_3G00257780 Rroxscaffold_4G00282760 Rroxscaffold_4G00295240 Rroxscaffold_4G00316850 Rroxscaffold_5G00343780
rosa_samantha	Rh1AG079100 Rh2BG126800 Rh3CG293900 Rh3DG288300 Rh5AG378800 Rh5BG350000 Rh6AG284800 Rh6BG298800 Rh6CG115900 Rh7DG284600
rosa_wichuraiana	Rw5G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	640
AciI	CCGC	3 cut(s)	46, 447, 665
AclWI	GGATC	1 cut(s)	203
AcsI	RAATTY	2 cut(s)	145, 389
AcuI	CTGAAG	2 cut(s)	134, 417
AfiI	CCNNNNNNNGG	1 cut(s)	408
AgsI	TTSAA	2 cut(s)	330, 380
AjnI	CCWGG	1 cut(s)	449
AluBI	AGCT	5 cut(s)	110, 121, 406, 428, 444
AluI	AGCT	5 cut(s)	110, 121, 406, 428, 444
Alw21I	GWGCWC	1 cut(s)	112
Alw26I	GTCTC	1 cut(s)	702
AlwI	GGATC	1 cut(s)	203
AlwNI	CAGNNNCTG	1 cut(s)	414
AoxI	GGCC	3 cut(s)	180, 435, 591
ApeKI	GCWGC	3 cut(s)	118, 168, 175
ApoI	RAATTY	2 cut(s)	145, 389
AseI	ATTAAT	1 cut(s)	519
AspS9I	GGNCC	2 cut(s)	212, 642
AsuC2I	CCSGG	1 cut(s)	555
AvaII	GGWCC	2 cut(s)	212, 642
BanII	GRGCYC	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	3 cut(s)	130, 180, 187
BccI	CCATC	2 cut(s)	223, 230
BciT130I	CCWGG	1 cut(s)	451
BcnI	CCSGG	1 cut(s)	555
BcoDI	GTCTC	1 cut(s)	702
BfmI	CTRYAG	2 cut(s)	439, 595
BisI	GCNGC	5 cut(s)	47, 119, 169, 176, 665
BlsI	GCNGC	5 cut(s)	48, 120, 170, 177, 666
Bme1390I	CCNGG	2 cut(s)	451, 555
Bme18I	GGWCC	2 cut(s)	212, 642
BmgT120I	GGNCC	2 cut(s)	212, 642
BmrFI	CCNGG	2 cut(s)	451, 555
BmsI	GCATC	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	220
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BpmI	CTGGAG	2 cut(s)	147, 699
Bpu10I	CCTNAGC	1 cut(s)	407
BpuEI	CTTGAG	2 cut(s)	554, 586
BpuMI	CCSGG	1 cut(s)	555
BsaAI	YACGTR	1 cut(s)	514
BsaJI	CCNNGG	2 cut(s)	313, 527
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse118I	RCCGGY	1 cut(s)	178
Bse1I	ACTGG	2 cut(s)	469, 716
Bse3DI	GCAATG	1 cut(s)	677
BseBI	CCWGG	1 cut(s)	451
BseDI	CCNNGG	2 cut(s)	313, 527
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMI	GCAATG	1 cut(s)	677
BseMII	CTCAG	1 cut(s)	421
BseNI	ACTGG	2 cut(s)	469, 716
BseRI	GAGGAG	3 cut(s)	52, 175, 675
BseXI	GCAGC	3 cut(s)	130, 180, 187
BsgI	GTGCAG	1 cut(s)	226
BshFI	GGCC	3 cut(s)	182, 437, 593
BsiHKAI	GWGCWC	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	179, 555
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	1 cut(s)	702
BsmBI	CGTCTC	1 cut(s)	702
BsmFI	GGGAC	1 cut(s)	273
BsnI	GGCC	3 cut(s)	182, 437, 593
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	76, 195, 307
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	3 cut(s)	46, 447, 665
BspANI	GGCC	3 cut(s)	182, 437, 593
BspCNI	CTCAG	1 cut(s)	420
BspHI	TCATGA	1 cut(s)	737
BspMAI	CTGCAG	1 cut(s)	599
BspPI	GGATC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	677
BsrFI	RCCGGY	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	469, 716
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	313, 527
BssMI	GATC	3 cut(s)	76, 195, 307
BssT1I	CCWWGG	2 cut(s)	313, 527
Bst2UI	CCWGG	1 cut(s)	451
Bst4CI	ACNGT	2 cut(s)	357, 587
BstBAI	YACGTR	1 cut(s)	514
BstC8I	GCNNGC	4 cut(s)	123, 173, 180, 595
BstDEI	CTNAG	1 cut(s)	407
BstDSI	CCRYGG	1 cut(s)	313
BstKTI	GATC	3 cut(s)	79, 198, 310
BstMAI	GTCTC	1 cut(s)	702
BstMBI	GATC	3 cut(s)	76, 195, 307
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 420, 434, 609
BstNI	CCWGG	1 cut(s)	451
BstSCI	CCNGG	2 cut(s)	449, 553
BstSFI	CTRYAG	2 cut(s)	439, 595
BstSNI	TACGTA	1 cut(s)	514
BstV1I	GCAGC	3 cut(s)	130, 180, 187
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BsuRI	GGCC	3 cut(s)	182, 437, 593
BtgI	CCRYGG	1 cut(s)	313
BtgZI	GCGATG	1 cut(s)	345
Cac8I	GCNNGC	4 cut(s)	123, 173, 180, 595
CaiI	CAGNNNCTG	1 cut(s)	414
CciI	TCATGA	1 cut(s)	737
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	212, 642
CspCI	CAANNNNNGTGG	2 cut(s)	527, 562
CviAII	CATG	4 cut(s)	275, 314, 486, 738
DdeI	CTNAG	1 cut(s)	407
DpnI	GATC	3 cut(s)	78, 197, 309
DpnII	GATC	3 cut(s)	76, 195, 307
DrdI	GACNNNNNNGTC	1 cut(s)	640
DseDI	GACNNNNNNGTC	1 cut(s)	640
EciI	GGCGGA	1 cut(s)	436
Ecl136II	GAGCTC	1 cut(s)	110
Eco105I	TACGTA	1 cut(s)	514
Eco130I	CCWWGG	2 cut(s)	313, 527
Eco147I	AGGCCT	1 cut(s)	593
Eco24I	GRGCYC	1 cut(s)	112
Eco32I	GATATC	1 cut(s)	298
Eco47I	GGWCC	2 cut(s)	212, 642
Eco53kI	GAGCTC	1 cut(s)	110
Eco57I	CTGAAG	2 cut(s)	134, 417
EcoICRI	GAGCTC	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	642
EcoRII	CCWGG	1 cut(s)	449
EcoRV	GATATC	1 cut(s)	298
EcoT14I	CCWWGG	2 cut(s)	313, 527
EcoT38I	GRGCYC	1 cut(s)	112
ErhI	CCWWGG	2 cut(s)	313, 527
Esp3I	CGTCTC	1 cut(s)	702
FaeI	CATG	4 cut(s)	278, 317, 489, 741
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	4 cut(s)	274, 313, 485, 737
Fnu4HI	GCNGC	5 cut(s)	47, 119, 169, 176, 665
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	5 cut(s)	47, 119, 169, 176, 665
GluI	GCNGC	5 cut(s)	47, 119, 169, 176, 665
GsuI	CTGGAG	2 cut(s)	147, 699
HaeIII	GGCC	3 cut(s)	182, 437, 593
HapII	CCGG	2 cut(s)	179, 555
Hin1II	CATG	4 cut(s)	278, 317, 489, 741
HinfI	GANTC	3 cut(s)	318, 575, 634
HpaII	CCGG	2 cut(s)	179, 555
Hpy188I	TCNGA	5 cut(s)	88, 107, 114, 263, 295
Hpy188III	TCNNGA	7 cut(s)	21, 193, 380, 395, 479, 565, 738
Hpy99I	CGWCG	2 cut(s)	107, 143
HpyAV	CCTTC	5 cut(s)	36, 125, 193, 633, 700
HpyCH4III	ACNGT	2 cut(s)	357, 587
HpyCH4IV	ACGT	2 cut(s)	141, 513
HpyCH4V	TGCA	6 cut(s)	66, 82, 168, 243, 423, 597
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 420, 434, 609
HpyF3I	CTNAG	1 cut(s)	407
HpySE526I	ACGT	2 cut(s)	141, 513
Hsp92II	CATG	4 cut(s)	278, 317, 489, 741
KroI	GCCGGC	1 cut(s)	178
KroNI	GCCGGC	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	76, 195, 307
LmnI	GCTCC	2 cut(s)	107, 449
Lsp1109I	GCAGC	3 cut(s)	130, 180, 187
LweI	GCATC	1 cut(s)	155
MaeII	ACGT	2 cut(s)	141, 513
MaeIII	GTNAC	2 cut(s)	416, 718
MalI	GATC	3 cut(s)	78, 197, 309
MboI	GATC	3 cut(s)	76, 195, 307
MboII	GAAGA	5 cut(s)	16, 220, 313, 615, 651
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	4 cut(s)	145, 389, 516, 520
MlyI	GAGTC	1 cut(s)	628
MmeI	TCCRAC	1 cut(s)	85
MroNI	GCCGGC	1 cut(s)	178
MseI	TTAA	1 cut(s)	519
MspI	CCGG	2 cut(s)	179, 555
MspR9I	CCNGG	2 cut(s)	451, 555
MvaI	CCWGG	1 cut(s)	451
MwoI	GCNNNNNNNGC	4 cut(s)	88, 420, 434, 609
NaeI	GCCGGC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	555
NcoI	CCATGG	1 cut(s)	313
NdeII	GATC	3 cut(s)	76, 195, 307
NgoMIV	GCCGGC	1 cut(s)	178
NlaIII	CATG	4 cut(s)	278, 317, 489, 741
NmeAIII	GCCGAG	1 cut(s)	304
PagI	TCATGA	1 cut(s)	737
PceI	AGGCCT	1 cut(s)	593
PdiI	GCCGGC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	318, 575
PkrI	GCNGC	5 cut(s)	48, 120, 170, 177, 666
PleI	GAGTC	1 cut(s)	628
PpsI	GAGTC	1 cut(s)	628
Ppu21I	YACGTR	1 cut(s)	514
PpuMI	RGGWCCY	1 cut(s)	642
PshBI	ATTAAT	1 cut(s)	519
Psp124BI	GAGCTC	1 cut(s)	112
Psp5II	RGGWCCY	1 cut(s)	642
Psp6I	CCWGG	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	449
PspPI	GGNCC	2 cut(s)	212, 642
PspPPI	RGGWCCY	1 cut(s)	642
PstI	CTGCAG	1 cut(s)	599
PstNI	CAGNNNCTG	1 cut(s)	414
PsuI	RGATCY	1 cut(s)	195
SacI	GAGCTC	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	5 cut(s)	47, 119, 169, 176, 665
Sau3AI	GATC	3 cut(s)	76, 195, 307
Sau96I	GGNCC	2 cut(s)	212, 642
SchI	GAGTC	1 cut(s)	628
ScrFI	CCNGG	2 cut(s)	451, 555
SduI	GDGCHC	1 cut(s)	112
SfaNI	GCATC	1 cut(s)	155
SfcI	CTRYAG	2 cut(s)	439, 595
SinI	GGWCC	2 cut(s)	212, 642
SmlI	CTYRAG	2 cut(s)	533, 565
SmoI	CTYRAG	2 cut(s)	533, 565
SnaBI	TACGTA	1 cut(s)	514
Sse9I	AATT	4 cut(s)	145, 389, 516, 520
SseBI	AGGCCT	1 cut(s)	593
SsiI	CCGC	3 cut(s)	46, 447, 665
SstI	GAGCTC	1 cut(s)	112
StuI	AGGCCT	1 cut(s)	593
StyD4I	CCNGG	2 cut(s)	449, 553
StyI	CCWWGG	2 cut(s)	313, 527
TaaI	ACNGT	2 cut(s)	357, 587
TaiI	ACGT	2 cut(s)	144, 516
TaqI	TCGA	2 cut(s)	637, 670
TasI	AATT	4 cut(s)	145, 389, 516, 520
TauI	GCSGC	2 cut(s)	49, 667
TfiI	GAWTC	2 cut(s)	318, 575
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TseI	GCWGC	3 cut(s)	118, 168, 175
TspDTI	ATGAA	2 cut(s)	17, 402
VpaK11BI	GGWCC	2 cut(s)	212, 642
VspI	ATTAAT	1 cut(s)	519
XapI	RAATTY	2 cut(s)	145, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.