transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0414911 RchiOBHm_Chr4g0425011 |
| rosa_laevigata | RLG00000001467 RLG00000023395 RLG00000031447 RLG00000034760 |
| rosa_multiflora | Rmu_sc0000321.1_g000004 Rmu_sc0003921.1_g000012 Rmu_sc0032413.1_g000001 Rmu_sc0036978.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00151150 Rroxscaffold_3G00257780 Rroxscaffold_4G00282760 Rroxscaffold_4G00295240 Rroxscaffold_4G00316850 Rroxscaffold_5G00343780 |
| rosa_samantha | Rh1AG079100 Rh2BG126800 Rh3CG293900 Rh3DG288300 Rh5AG378800 Rh5BG350000 Rh6AG284800 Rh6BG298800 Rh6CG115900 Rh7DG284600 |
| rosa_wichuraiana | Rw5G032050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 254 |
| AcsI | RAATTY | 1 cut(s) | 515 |
| AdeI | CACNNNGTG | 1 cut(s) | 86 |
| AgsI | TTSAA | 2 cut(s) | 456, 506 |
| AjnI | CCWGG | 2 cut(s) | 82, 549 |
| AluBI | AGCT | 1 cut(s) | 561 |
| AluI | AGCT | 1 cut(s) | 561 |
| AlwI | GGATC | 1 cut(s) | 254 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 77 |
| ApeKI | GCWGC | 1 cut(s) | 71 |
| ApoI | RAATTY | 1 cut(s) | 515 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 157, 189 |
| AspS9I | GGNCC | 1 cut(s) | 263 |
| AsuHPI | GGTGA | 3 cut(s) | 122, 145, 544 |
| AvaII | GGWCC | 1 cut(s) | 263 |
| BbsI | GAAGAC | 1 cut(s) | 271 |
| BbvI | GCAGC | 1 cut(s) | 83 |
| BccI | CCATC | 3 cut(s) | 137, 274, 281 |
| BciT130I | CCWGG | 2 cut(s) | 84, 551 |
| BfaI | CTAG | 1 cut(s) | 168 |
| BisI | GCNGC | 1 cut(s) | 72 |
| BlsI | GCNGC | 1 cut(s) | 73 |
| Bme1390I | CCNGG | 2 cut(s) | 84, 551 |
| Bme18I | GGWCC | 1 cut(s) | 263 |
| BmgT120I | GGNCC | 1 cut(s) | 263 |
| BmrFI | CCNGG | 2 cut(s) | 84, 551 |
| BmsI | GCATC | 1 cut(s) | 514 |
| BpiI | GAAGAC | 1 cut(s) | 271 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 362, 394, 545 |
| BpmI | CTGGAG | 1 cut(s) | 533 |
| BsaJI | CCNNGG | 3 cut(s) | 54, 439, 528 |
| Bse3DI | GCAATG | 1 cut(s) | 34 |
| BseBI | CCWGG | 2 cut(s) | 84, 551 |
| BseDI | CCNNGG | 3 cut(s) | 54, 439, 528 |
| BseGI | GGATG | 1 cut(s) | 148 |
| BseMI | GCAATG | 1 cut(s) | 34 |
| BseXI | GCAGC | 1 cut(s) | 83 |
| BsgI | GTGCAG | 1 cut(s) | 63 |
| BslFI | GGGAC | 1 cut(s) | 399 |
| BsmFI | GGGAC | 1 cut(s) | 399 |
| Bsp143I | GATC | 3 cut(s) | 121, 246, 433 |
| Bsp19I | CCATGG | 1 cut(s) | 439 |
| BspPI | GGATC | 1 cut(s) | 254 |
| BsrDI | GCAATG | 1 cut(s) | 34 |
| BssECI | CCNNGG | 3 cut(s) | 54, 439, 528 |
| BssMI | GATC | 3 cut(s) | 121, 246, 433 |
| BssT1I | CCWWGG | 3 cut(s) | 54, 439, 528 |
| Bst2UI | CCWGG | 2 cut(s) | 84, 551 |
| Bst4CI | ACNGT | 1 cut(s) | 483 |
| Bst6I | CTCTTC | 1 cut(s) | 176 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 77 |
| BstDSI | CCRYGG | 1 cut(s) | 439 |
| BstF5I | GGATG | 1 cut(s) | 148 |
| BstKTI | GATC | 3 cut(s) | 124, 249, 436 |
| BstMBI | GATC | 3 cut(s) | 121, 246, 433 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 45, 77 |
| BstNI | CCWGG | 2 cut(s) | 84, 551 |
| BstNSI | RCATGY | 1 cut(s) | 387 |
| BstSCI | CCNGG | 2 cut(s) | 82, 549 |
| BstV1I | GCAGC | 1 cut(s) | 83 |
| BstV2I | GAAGAC | 1 cut(s) | 271 |
| BstX2I | RGATCY | 1 cut(s) | 246 |
| BstYI | RGATCY | 1 cut(s) | 246 |
| BtgI | CCRYGG | 1 cut(s) | 439 |
| BtgZI | GCGATG | 1 cut(s) | 471 |
| BtsCI | GGATG | 1 cut(s) | 148 |
| CaiI | CAGNNNCTG | 1 cut(s) | 77 |
| Cfr13I | GGNCC | 1 cut(s) | 263 |
| CsiI | ACCWGGT | 1 cut(s) | 82 |
| CviAII | CATG | 4 cut(s) | 125, 384, 401, 440 |
| CviJI | RGCY | 7 cut(s) | 59, 173, 187, 192, 318, 470, 561 |
| CviKI_1 | RGCY | 7 cut(s) | 59, 173, 187, 192, 318, 470, 561 |
| DpnI | GATC | 3 cut(s) | 123, 248, 435 |
| DpnII | GATC | 3 cut(s) | 121, 246, 433 |
| DraIII | CACNNNGTG | 1 cut(s) | 86 |
| Eam1104I | CTCTTC | 1 cut(s) | 176 |
| EarI | CTCTTC | 1 cut(s) | 176 |
| Eco130I | CCWWGG | 3 cut(s) | 54, 439, 528 |
| Eco32I | GATATC | 1 cut(s) | 424 |
| Eco47I | GGWCC | 1 cut(s) | 263 |
| EcoRII | CCWGG | 2 cut(s) | 82, 549 |
| EcoRV | GATATC | 1 cut(s) | 424 |
| EcoT14I | CCWWGG | 3 cut(s) | 54, 439, 528 |
| ErhI | CCWWGG | 3 cut(s) | 54, 439, 528 |
| FaeI | CATG | 4 cut(s) | 128, 387, 404, 443 |
| FaiI | YATR | 9 cut(s) | 62, 126, 231, 255, 344, 385, 402, 441, 513 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 458, 490, 550 |
| FaqI | GGGAC | 1 cut(s) | 399 |
| FatI | CATG | 4 cut(s) | 124, 383, 400, 439 |
| Fnu4HI | GCNGC | 1 cut(s) | 72 |
| FokI | GGATG | 1 cut(s) | 155 |
| Fsp4HI | GCNGC | 1 cut(s) | 72 |
| FspBI | CTAG | 1 cut(s) | 168 |
| GluI | GCNGC | 1 cut(s) | 72 |
| GsuI | CTGGAG | 1 cut(s) | 533 |
| Hin1II | CATG | 4 cut(s) | 128, 387, 404, 443 |
| HinfI | GANTC | 3 cut(s) | 152, 444, 535 |
| HphI | GGTGA | 3 cut(s) | 122, 145, 544 |
| Hpy166II | GTNNAC | 2 cut(s) | 91, 113 |
| Hpy188I | TCNGA | 1 cut(s) | 421 |
| Hpy188III | TCNNGA | 3 cut(s) | 379, 506, 521 |
| Hpy8I | GTNNAC | 2 cut(s) | 91, 113 |
| HpyCH4III | ACNGT | 1 cut(s) | 483 |
| HpyCH4V | TGCA | 9 cut(s) | 7, 28, 48, 71, 80, 214, 294, 324, 387 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 45, 77 |
| Hsp92II | CATG | 4 cut(s) | 128, 387, 404, 443 |
| Kzo9I | GATC | 3 cut(s) | 121, 246, 433 |
| LmnI | GCTCC | 2 cut(s) | 553, 566 |
| LpnPI | CCDG | 8 cut(s) | 69, 96, 235, 246, 298, 534, 536, 563 |
| Lsp1109I | GCAGC | 1 cut(s) | 83 |
| LweI | GCATC | 1 cut(s) | 514 |
| MabI | ACCWGGT | 1 cut(s) | 82 |
| MaeI | CTAG | 1 cut(s) | 168 |
| MaeIII | GTNAC | 1 cut(s) | 358 |
| MalI | GATC | 3 cut(s) | 123, 248, 435 |
| MboI | GATC | 3 cut(s) | 121, 246, 433 |
| MboII | GAAGA | 5 cut(s) | 76, 193, 226, 271, 439 |
| MflI | RGATCY | 1 cut(s) | 246 |
| MluCI | AATT | 3 cut(s) | 240, 365, 515 |
| MnlI | CCTC | 6 cut(s) | 124, 171, 177, 312, 365, 427 |
| MseI | TTAA | 1 cut(s) | 568 |
| MspR9I | CCNGG | 2 cut(s) | 84, 551 |
| MvaI | CCWGG | 2 cut(s) | 84, 551 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 45, 77 |
| NcoI | CCATGG | 1 cut(s) | 439 |
| NdeII | GATC | 3 cut(s) | 121, 246, 433 |
| NlaIII | CATG | 4 cut(s) | 128, 387, 404, 443 |
| NmeAIII | GCCGAG | 1 cut(s) | 430 |
| NspI | RCATGY | 1 cut(s) | 387 |
| PfeI | GAWTC | 3 cut(s) | 152, 444, 535 |
| PfoI | TCCNGGA | 1 cut(s) | 549 |
| PkrI | GCNGC | 1 cut(s) | 73 |
| Psp6I | CCWGG | 2 cut(s) | 82, 549 |
| PspGI | CCWGG | 2 cut(s) | 82, 549 |
| PspPI | GGNCC | 1 cut(s) | 263 |
| PstNI | CAGNNNCTG | 1 cut(s) | 77 |
| PsuI | RGATCY | 1 cut(s) | 246 |
| SaqAI | TTAA | 1 cut(s) | 568 |
| SatI | GCNGC | 1 cut(s) | 72 |
| Sau3AI | GATC | 3 cut(s) | 121, 246, 433 |
| Sau96I | GGNCC | 1 cut(s) | 263 |
| ScrFI | CCNGG | 2 cut(s) | 84, 551 |
| SetI | ASST | 8 cut(s) | 85, 112, 135, 213, 333, 476, 534, 563 |
| SexAI | ACCWGGT | 1 cut(s) | 82 |
| SfaNI | GCATC | 1 cut(s) | 514 |
| SinI | GGWCC | 1 cut(s) | 263 |
| Sse9I | AATT | 3 cut(s) | 240, 365, 515 |
| SspMI | CTAG | 1 cut(s) | 168 |
| StyD4I | CCNGG | 2 cut(s) | 82, 549 |
| StyI | CCWWGG | 3 cut(s) | 54, 439, 528 |
| TaaI | ACNGT | 1 cut(s) | 483 |
| TaqI | TCGA | 1 cut(s) | 380 |
| TasI | AATT | 3 cut(s) | 240, 365, 515 |
| TfiI | GAWTC | 3 cut(s) | 152, 444, 535 |
| Tru1I | TTAA | 1 cut(s) | 568 |
| Tru9I | TTAA | 1 cut(s) | 568 |
| TseI | GCWGC | 1 cut(s) | 71 |
| TspDTI | ATGAA | 3 cut(s) | 23, 77, 528 |
| VpaK11BI | GGWCC | 1 cut(s) | 263 |
| XapI | RAATTY | 1 cut(s) | 515 |
| XceI | RCATGY | 1 cut(s) | 387 |
| XspI | CTAG | 1 cut(s) | 168 |