Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006427

Physical Location & Seq

Genomic Coordinates Reverse (-)

52843416 .. 52843623

Gene Structure 208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG298800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGCCCAACAAAACCCTGGCGCAGAAGCTGTGTAAGCCGATTAGCTACCCCGACGGCGCCTCCAAGGCTCGGATATACTCCGATGTCAACGTCATTCACCCCAAGGAGTACTGGGACTACGAGGCCTTCACCGTCCAATGGGGAGAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

50

Amino Acids

5.8

Weight (kDa)

6.53

Isoelectric Point (pI)

14.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006427)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0414911 RchiOBHm_Chr4g0425011
rosa_laevigata	RLG00000001467 RLG00000023395 RLG00000031447 RLG00000034760
rosa_multiflora	Rmu_sc0000321.1_g000004 Rmu_sc0003921.1_g000012 Rmu_sc0032413.1_g000001 Rmu_sc0036978.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151150 Rroxscaffold_3G00257780 Rroxscaffold_4G00282760 Rroxscaffold_4G00295240 Rroxscaffold_4G00316850 Rroxscaffold_5G00343780
rosa_samantha	Rh1AG079100 Rh2BG126800 Rh3CG293900 Rh3DG288300 Rh5AG378800 Rh5BG350000 Rh6AG284800 Rh6BG298800 Rh6CG115900 Rh7DG284600
rosa_wichuraiana	Rw5G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	2 cut(s)	69, 138
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	2 cut(s)	28, 45
AluI	AGCT	2 cut(s)	28, 45
AlwNI	CAGNNNCTG	1 cut(s)	28
AoxI	GGCC	1 cut(s)	123
AspLEI	GCGC	2 cut(s)	22, 59
AsuHPI	GGTGA	2 cut(s)	89, 121
BanI	GGYRCC	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	17
BfoI	RGCGCY	1 cut(s)	60
BglI	GCCNNNNNGGC	1 cut(s)	65
BmcAI	AGTACT	1 cut(s)	110
Bme1390I	CCNGG	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	17
BmrI	ACTGGG	1 cut(s)	121
BmuI	ACTGGG	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	3 cut(s)	15, 63, 102
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 138
Bse1I	ACTGG	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	3 cut(s)	15, 63, 102
BseLI	CCNNNNNNNGG	2 cut(s)	69, 138
BseNI	ACTGG	1 cut(s)	116
BshFI	GGCC	1 cut(s)	125
BshNI	GGYRCC	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	69, 138
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	125
BspANI	GGCC	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	3 cut(s)	15, 63, 102
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	2 cut(s)	63, 102
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	133
BstACI	GRCGYC	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	22, 59
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 65
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	125
CaiI	CAGNNNCTG	1 cut(s)	28
CfoI	GCGC	2 cut(s)	22, 59
Csp6I	GTAC	1 cut(s)	109
CviJI	RGCY	5 cut(s)	28, 37, 45, 68, 125
CviKI_1	RGCY	5 cut(s)	28, 37, 45, 68, 125
CviQI	GTAC	1 cut(s)	109
DinI	GGCGCC	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	63, 102
Eco147I	AGGCCT	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	15
EcoT14I	CCWWGG	2 cut(s)	63, 102
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
ErhI	CCWWGG	2 cut(s)	63, 102
FaiI	YATR	1 cut(s)	76
FaqI	GGGAC	1 cut(s)	128
GlaI	GCGC	2 cut(s)	21, 58
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	125
HhaI	GCGC	2 cut(s)	22, 59
Hin1I	GRCGYC	1 cut(s)	57
Hin6I	GCGC	2 cut(s)	20, 57
HinP1I	GCGC	2 cut(s)	20, 57
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HphI	GGTGA	2 cut(s)	89, 121
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	72, 82
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4IV	ACGT	1 cut(s)	90
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 65
HpySE526I	ACGT	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	57
HspAI	GCGC	2 cut(s)	20, 57
KasI	GGCGCC	1 cut(s)	56
LpnPI	CCDG	3 cut(s)	2, 29, 97
MaeII	ACGT	1 cut(s)	90
MluCI	AATT	1 cut(s)	148
Mly113I	GGCGCC	1 cut(s)	57
MnlI	CCTC	2 cut(s)	70, 115
MspR9I	CCNGG	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	34, 65
NarI	GGCGCC	1 cut(s)	57
NlaIV	GGNNCC	1 cut(s)	58
PceI	AGGCCT	1 cut(s)	125
PluTI	GGCGCC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	28
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
ScaI	AGTACT	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	3 cut(s)	30, 47, 93
SfoI	GGCGCC	1 cut(s)	58
SgeI	CNNG	8 cut(s)	28, 29, 62, 76, 81, 115, 124, 133
Sse9I	AATT	1 cut(s)	148
SseBI	AGGCCT	1 cut(s)	125
SspDI	GGCGCC	1 cut(s)	56
StuI	AGGCCT	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	2 cut(s)	63, 102
TaaI	ACNGT	1 cut(s)	133
TaiI	ACGT	1 cut(s)	93
TasI	AATT	1 cut(s)	148
TatI	WGTACW	1 cut(s)	108
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
ZrmI	AGTACT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.