Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000408.1

Orthogroup ID

OG0003170

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 737

Gene Structure 737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 436 bp

tgaagagaagagggagttggagcgccttgaaaaaccattatataattcagttcgtcgagctgcagaagttcatcgccaggtacggaaatacatcagagggattttaaagcctggaatgttgatgactgatttgtgtgagactttggagaacacagtccgtaagttaatatccgagaatggtctggaagcaggcattgcattccccacaggatgctctttgaattgggttgctgctcattggaccccaaatacaggggacaagacggtgcttcagtatgatgatgtgatgaaattagactttggaactcatgttgatggtcatatagttgactgtgcatttacagtagcattcaatcctatgtttgatccactacttgaagcctcacgtgaagcaacaaatacgggtatcaaggtactcttacctcctcagtattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

144

Amino Acids

16.29

Weight (kDa)

5.81

Isoelectric Point (pI)

14.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	17 - 139	1.8e-15	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44180 AT2G44180 AT3G59990 AT3G59990 AT3G59990 AT3G59990
fragaria_vesca	FvH4_5g31110 FvH4_5g31110 FvH4_5g31120
malus_domestica	MD17G1285400.v1.1
prunus_persica	Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1
pyrus_communis	pycom17g28120
rosa_chinensis	RchiOBHm_Chr1g0328111 RchiOBHm_Chr1g0328121 RchiOBHm_Chr1g0328131
rosa_laevigata	RLG00000029939
rosa_multiflora	Rmu_sc0000408.1_g000001 Rmu_sc0002809.1_g000034 Rmu_sc0004646.1_g000013 Rmu_sc0009961.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060180 Rroxscaffold_4G00321810
rosa_rugosa	Rorug01G0073700 Rorug01G0073800.1 Rorug01G0073900
rosa_samantha	Rh1AG090800 Rh1BG072600 Rh1BG073300 Rh1BG073500 Rh1CG087200 Rh1DG094100 Rh1DG094600
rosa_wichuraiana	Rw1G007030 Rw1G007040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	360
AcuI	CTGAAG	1 cut(s)	255
AcvI	CACGTG	1 cut(s)	387
AfaI	GTAC	2 cut(s)	82, 415
AfiI	CCNNNNNNNGG	1 cut(s)	252
AgsI	TTSAA	4 cut(s)	30, 221, 353, 378
AjnI	CCWGG	2 cut(s)	76, 110
AjuI	GAANNNNNNNTTGG	1 cut(s)	32
AluBI	AGCT	1 cut(s)	60
AluI	AGCT	1 cut(s)	60
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	360
ApeKI	GCWGC	2 cut(s)	60, 231
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	241
AvaII	GGWCC	1 cut(s)	241
BbrPI	CACGTG	1 cut(s)	387
BbvI	GCAGC	2 cut(s)	47, 218
BccI	CCATC	1 cut(s)	309
BciT130I	CCWGG	2 cut(s)	78, 112
BcoDI	GTCTC	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	61
BfoI	RGCGCY	1 cut(s)	26
BisI	GCNGC	2 cut(s)	61, 232
BlsI	GCNGC	2 cut(s)	62, 233
Bme1390I	CCNGG	2 cut(s)	78, 112
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	2 cut(s)	78, 112
BmsI	GCATC	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	193
BseBI	CCWGG	2 cut(s)	78, 112
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	415
BseXI	GCAGC	2 cut(s)	47, 218
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	270
BsmI	GAATGC	2 cut(s)	198, 348
Bsp143I	GATC	1 cut(s)	365
BspLI	GGNNCC	1 cut(s)	243
BspMAI	CTGCAG	1 cut(s)	65
BspPI	GGATC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	193
BssMI	GATC	1 cut(s)	365
Bst2UI	CCWGG	2 cut(s)	78, 112
Bst4CI	ACNGT	4 cut(s)	155, 266, 333, 344
Bst6I	CTCTTC	1 cut(s)	3
BstAPI	GCANNNNNTGC	1 cut(s)	195
BstBAI	YACGTR	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	427
BstF5I	GGATG	1 cut(s)	216
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	1 cut(s)	368
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	365
BstMWI	GCNNNNNNNGC	1 cut(s)	195
BstNI	CCWGG	2 cut(s)	78, 112
BstSCI	CCNGG	2 cut(s)	76, 110
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	47, 218
BtgZI	GCGATG	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	191
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	241
Csp6I	GTAC	2 cut(s)	81, 414
CviAII	CATG	1 cut(s)	309
CviJI	RGCY	3 cut(s)	60, 110, 381
CviKI_1	RGCY	3 cut(s)	60, 110, 381
CviQI	GTAC	2 cut(s)	81, 414
DdeI	CTNAG	1 cut(s)	427
DpnI	GATC	1 cut(s)	367
DpnII	GATC	1 cut(s)	365
DraI	TTTAAA	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	255
Eco72I	CACGTG	1 cut(s)	387
EcoRII	CCWGG	2 cut(s)	76, 110
FaeI	CATG	1 cut(s)	312
FaiI	YATR	7 cut(s)	41, 43, 277, 310, 322, 324, 360
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	1 cut(s)	308
Fnu4HI	GCNGC	2 cut(s)	61, 232
FokI	GGATG	1 cut(s)	223
Fsp4HI	GCNGC	2 cut(s)	61, 232
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	2 cut(s)	61, 232
HaeII	RGCGCY	1 cut(s)	26
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	312
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	329
HindII	GTYRAC	1 cut(s)	329
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188I	TCNGA	2 cut(s)	96, 173
Hpy188III	TCNNGA	1 cut(s)	183
Hpy8I	GTNNAC	1 cut(s)	329
Hpy99I	CGWCG	1 cut(s)	58
HpyCH4III	ACNGT	4 cut(s)	155, 266, 333, 344
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	3 cut(s)	63, 198, 336
HpyF10VI	GCNNNNNNNGC	1 cut(s)	195
HpyF3I	CTNAG	1 cut(s)	427
HpySE526I	ACGT	1 cut(s)	386
Hsp92II	CATG	1 cut(s)	312
HspAI	GCGC	1 cut(s)	23
Kzo9I	GATC	1 cut(s)	365
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	8 cut(s)	63, 90, 97, 124, 168, 175, 193, 238
Lsp1109I	GCAGC	2 cut(s)	47, 218
LweI	GCATC	1 cut(s)	201
MaeII	ACGT	1 cut(s)	386
MalI	GATC	1 cut(s)	367
MboI	GATC	1 cut(s)	365
MboII	GAAGA	2 cut(s)	15, 20
MluCI	AATT	3 cut(s)	44, 221, 291
MnlI	CCTC	5 cut(s)	4, 90, 392, 433, 436
MseI	TTAA	3 cut(s)	105, 165, 434
MslI	CAYNNNNRTG	1 cut(s)	313
MspR9I	CCNGG	2 cut(s)	78, 112
Mva1269I	GAATGC	2 cut(s)	198, 348
MvaI	CCWGG	2 cut(s)	78, 112
MwoI	GCNNNNNNNGC	1 cut(s)	195
NdeII	GATC	1 cut(s)	365
NlaIII	CATG	1 cut(s)	312
NlaIV	GGNNCC	1 cut(s)	243
PctI	GAATGC	2 cut(s)	198, 348
PkrI	GCNGC	2 cut(s)	62, 233
PmaCI	CACGTG	1 cut(s)	387
PmlI	CACGTG	1 cut(s)	387
Ppu21I	YACGTR	1 cut(s)	387
Psp6I	CCWGG	2 cut(s)	76, 110
PspCI	CACGTG	1 cut(s)	387
PspGI	CCWGG	2 cut(s)	76, 110
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	241
PstI	CTGCAG	1 cut(s)	65
RsaI	GTAC	2 cut(s)	82, 415
RsaNI	GTAC	2 cut(s)	81, 414
RseI	CAYNNNNRTG	1 cut(s)	313
SaqAI	TTAA	3 cut(s)	105, 165, 434
SatI	GCNGC	2 cut(s)	61, 232
Sau3AI	GATC	1 cut(s)	365
Sau96I	GGNCC	1 cut(s)	241
ScrFI	CCNGG	2 cut(s)	78, 112
SetI	ASST	5 cut(s)	62, 82, 389, 415, 425
SfaNI	GCATC	1 cut(s)	201
SfcI	CTRYAG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	313
Sse9I	AATT	3 cut(s)	44, 221, 291
StyD4I	CCNGG	2 cut(s)	76, 110
TaaI	ACNGT	4 cut(s)	155, 266, 333, 344
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	1 cut(s)	56
TasI	AATT	3 cut(s)	44, 221, 291
Tru1I	TTAA	3 cut(s)	105, 165, 434
Tru9I	TTAA	3 cut(s)	105, 165, 434
TseI	GCWGC	2 cut(s)	60, 231
TspDTI	ATGAA	2 cut(s)	60, 303
TspGWI	ACGGA	2 cut(s)	98, 147
VpaK11BI	GGWCC	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.