Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001000.1

Orthogroup ID

OG0003259

Physical Location & Seq

Genomic Coordinates Reverse (-)

45535 .. 46355

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgggcgcggcgtactggaccgccaaaagtggcgtgggcgtggcctcgatgggagtgacgcggcaggagctcgtcatgaaatcgattgttccggtggtcatggctggagtgcttgggatctacggcctcatcatagctgtgattatcagcatcgggatcaatccaagggctaaatcttattacctgtttgatggatatgctcacttgtcctctgtccttacttgtggcctcgctggacattccacctcgctggagctcttgggagttcgaaacaatcttgcggaattgggtaagagcttcaagacaggcccctcgtttctctccatcgccgaaatctccaaattggctttgaacttgatgccagttcggaacggagcttcggaagaagacggcggcggttccgtgccaagaattaccaatgaaattctcggctttgtcgctcagattttgaagctttcgaactattggacccgctttcctataccactggaccaccatgatgatgaatttgcaaaagtcggaatggaagctgagcagagggaacctatagcagaagaactggaaggaggtggccgacatcgtgggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031347 GO:0032101 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:1900150 GO:1901000 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

195

Amino Acids

20.84

Weight (kDa)

6.21

Isoelectric Point (pI)

26.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	1 - 49	9.7e-10	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G10950 AT2G10950 AT2G10950
fragaria_vesca	FvH4_1g02550
malus_domestica	MD02G1023000.v1.1 MD15G1165700.v1.1
prunus_persica	Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1
pyrus_communis	pycom02g01980 pycom02g01990 pycom15g14850
rosa_chinensis	RchiOBHm_Chr2g0087581
rosa_laevigata	RLG00000014236 RLG00000015880
rosa_multiflora	Rmu_sc0000129.1_g000013 Rmu_sc0000146.1_g000024 Rmu_sc0001000.1_g000015 Rmu_sc0002299.1_g000025 Rmu_sc0007639.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153450 Rroxscaffold_6G00397290
rosa_rugosa	Rorug01G0476700
rosa_samantha	Rh2AG030300 Rh2AG030400 Rh2BG030100 Rh2CG030400 Rh2DG030300 Rh4CG011200 Rh4CG011800 Rh4CG012200 Rh4CG012600 Rh4DG394600 Rh5AG455300
rosa_wichuraiana	Rw2G002400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	8, 61
AciI	CCGC	7 cut(s)	8, 21, 61, 281, 393, 396, 472
AclWI	GGATC	2 cut(s)	125, 164
AcoI	YGGCCR	1 cut(s)	571
AcsI	RAATTY	2 cut(s)	423, 506
AfaI	GTAC	1 cut(s)	14
AgsI	TTSAA	3 cut(s)	301, 352, 451
AluBI	AGCT	7 cut(s)	70, 137, 256, 297, 377, 454, 530
AluI	AGCT	7 cut(s)	70, 137, 256, 297, 377, 454, 530
Alw21I	GWGCWC	2 cut(s)	72, 258
AlwI	GGATC	2 cut(s)	125, 164
AoxI	GGCC	5 cut(s)	42, 124, 226, 307, 571
ApoI	RAATTY	2 cut(s)	423, 506
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	4 cut(s)	18, 308, 468, 490
AsuII	TTCGAA	2 cut(s)	268, 458
AvaII	GGWCC	3 cut(s)	18, 468, 490
BanII	GRGCYC	2 cut(s)	72, 258
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	2 cut(s)	72, 258
BccI	CCATC	3 cut(s)	43, 185, 332
BceAI	ACGGC	2 cut(s)	139, 406
BfmI	CTRYAG	1 cut(s)	546
BisI	GCNGC	3 cut(s)	9, 62, 394
BlpI	GCTNAGC	1 cut(s)	531
BlsI	GCNGC	3 cut(s)	10, 63, 395
Bme18I	GGWCC	3 cut(s)	18, 468, 490
BmgT120I	GGNCC	4 cut(s)	18, 308, 468, 490
BmiI	GGNNCC	4 cut(s)	310, 400, 470, 543
BmsI	GCATC	2 cut(s)	159, 348
BpiI	GAAGAC	1 cut(s)	393
BpmI	CTGGAG	2 cut(s)	126, 272
Bpu1102I	GCTNAGC	1 cut(s)	531
Bpu14I	TTCGAA	2 cut(s)	268, 458
Bsa29I	ATCGAT	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	164
BsaWI	WCCGGW	1 cut(s)	91
Bse1I	ACTGG	4 cut(s)	20, 362, 492, 564
BseCI	ATCGAT	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	164
BseMII	CTCAG	2 cut(s)	455, 522
BseNI	ACTGG	4 cut(s)	20, 362, 492, 564
Bsh1236I	CGCG	2 cut(s)	8, 61
BshFI	GGCC	5 cut(s)	44, 126, 228, 309, 573
BshVI	ATCGAT	1 cut(s)	83
BsiHKAI	GWGCWC	2 cut(s)	72, 258
BsiSI	CCGG	1 cut(s)	92
BsnI	GGCC	5 cut(s)	44, 126, 228, 309, 573
Bsp119I	TTCGAA	2 cut(s)	268, 458
Bsp1286I	GDGCHC	2 cut(s)	72, 258
Bsp143I	GATC	2 cut(s)	117, 156
Bsp1720I	GCTNAGC	1 cut(s)	531
BspACI	CCGC	7 cut(s)	8, 21, 61, 281, 393, 396, 472
BspANI	GGCC	5 cut(s)	44, 126, 228, 309, 573
BspCNI	CTCAG	2 cut(s)	454, 523
BspDI	ATCGAT	1 cut(s)	83
BspFNI	CGCG	2 cut(s)	8, 61
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	4 cut(s)	310, 400, 470, 543
BspPI	GGATC	2 cut(s)	125, 164
BspT104I	TTCGAA	2 cut(s)	268, 458
BsrI	ACTGG	4 cut(s)	20, 362, 492, 564
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	2 cut(s)	117, 156
BssT1I	CCWWGG	1 cut(s)	164
BstBI	TTCGAA	2 cut(s)	268, 458
BstDEI	CTNAG	2 cut(s)	441, 531
BstFNI	CGCG	2 cut(s)	8, 61
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	2 cut(s)	120, 159
BstMBI	GATC	2 cut(s)	117, 156
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	546
BstUI	CGCG	2 cut(s)	8, 61
BstV2I	GAAGAC	1 cut(s)	393
BstX2I	RGATCY	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	117
Bsu15I	ATCGAT	1 cut(s)	83
BsuRI	GGCC	5 cut(s)	44, 126, 228, 309, 573
BsuTUI	ATCGAT	1 cut(s)	83
BtgZI	GCGATG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	485
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	1 cut(s)	8
Cfr13I	GGNCC	4 cut(s)	18, 308, 468, 490
ClaI	ATCGAT	1 cut(s)	83
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	3 cut(s)	76, 100, 497
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	2 cut(s)	441, 531
DpnI	GATC	2 cut(s)	119, 158
DpnII	GATC	2 cut(s)	117, 156
EaeI	YGGCCR	1 cut(s)	571
Ecl136II	GAGCTC	2 cut(s)	70, 256
Eco130I	CCWWGG	1 cut(s)	164
Eco24I	GRGCYC	2 cut(s)	72, 258
Eco47I	GGWCC	3 cut(s)	18, 468, 490
Eco53kI	GAGCTC	2 cut(s)	70, 256
EcoICRI	GAGCTC	2 cut(s)	70, 256
EcoO109I	RGGNCCY	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	164
EcoT38I	GRGCYC	2 cut(s)	72, 258
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	3 cut(s)	79, 103, 500
FaiI	YATR	7 cut(s)	77, 101, 134, 198, 482, 498, 548
FatI	CATG	3 cut(s)	75, 99, 496
FauI	CCCGC	1 cut(s)	479
Fnu4HI	GCNGC	3 cut(s)	9, 62, 394
FriOI	GRGCYC	2 cut(s)	72, 258
Fsp4HI	GCNGC	3 cut(s)	9, 62, 394
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	3 cut(s)	9, 62, 394
GsuI	CTGGAG	2 cut(s)	126, 272
HaeIII	GGCC	5 cut(s)	44, 126, 228, 309, 573
HapII	CCGG	1 cut(s)	92
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	8
Hin1II	CATG	3 cut(s)	79, 103, 500
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	452
HpaII	CCGG	1 cut(s)	92
Hpy188I	TCNGA	4 cut(s)	369, 382, 444, 521
Hpy188III	TCNNGA	3 cut(s)	76, 154, 301
HpyAV	CCTTC	1 cut(s)	557
HpyCH4V	TGCA	1 cut(s)	512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	2 cut(s)	441, 531
Hsp92II	CATG	3 cut(s)	79, 103, 500
HspAI	GCGC	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	117, 156
LmnI	GCTCC	3 cut(s)	67, 253, 374
LweI	GCATC	2 cut(s)	159, 348
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	119, 158
MboI	GATC	2 cut(s)	117, 156
MboII	GAAGA	3 cut(s)	395, 398, 566
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	2 cut(s)	72, 258
MluCI	AATT	5 cut(s)	284, 341, 411, 423, 506
MmeI	TCCRAC	1 cut(s)	499
MnlI	CCTC	8 cut(s)	55, 137, 220, 239, 256, 322, 531, 560
MslI	CAYNNNNRTG	3 cut(s)	137, 498, 501
MspI	CCGG	1 cut(s)	92
MvnI	CGCG	2 cut(s)	8, 61
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeII	GATC	2 cut(s)	117, 156
NlaIII	CATG	3 cut(s)	79, 103, 500
NlaIV	GGNNCC	4 cut(s)	310, 400, 470, 543
NmeAIII	GCCGAG	1 cut(s)	408
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	2 cut(s)	268, 458
PagI	TCATGA	1 cut(s)	75
PkrI	GCNGC	3 cut(s)	10, 63, 395
Psp124BI	GAGCTC	2 cut(s)	72, 258
PspN4I	GGNNCC	4 cut(s)	310, 400, 470, 543
PspPI	GGNCC	4 cut(s)	18, 308, 468, 490
PsuI	RGATCY	1 cut(s)	117
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
RseI	CAYNNNNRTG	3 cut(s)	137, 498, 501
SacI	GAGCTC	2 cut(s)	72, 258
SatI	GCNGC	3 cut(s)	9, 62, 394
Sau3AI	GATC	2 cut(s)	117, 156
Sau96I	GGNCC	4 cut(s)	18, 308, 468, 490
SduI	GDGCHC	2 cut(s)	72, 258
SfaNI	GCATC	2 cut(s)	159, 348
SfcI	CTRYAG	1 cut(s)	546
SfuI	TTCGAA	2 cut(s)	268, 458
SinI	GGWCC	3 cut(s)	18, 468, 490
SmiMI	CAYNNNNRTG	3 cut(s)	137, 498, 501
Sse9I	AATT	5 cut(s)	284, 341, 411, 423, 506
SsiI	CCGC	7 cut(s)	8, 21, 61, 281, 393, 396, 472
SstI	GAGCTC	2 cut(s)	72, 258
StyI	CCWWGG	1 cut(s)	164
TaqI	TCGA	4 cut(s)	47, 83, 268, 458
TasI	AATT	5 cut(s)	284, 341, 411, 423, 506
TauI	GCSGC	3 cut(s)	11, 64, 396
TscAI	CASTG	1 cut(s)	492
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	92, 435, 519
TspGWI	ACGGA	2 cut(s)	387, 391
TspRI	CASTG	1 cut(s)	492
VpaK11BI	GGWCC	3 cut(s)	18, 468, 490
XapI	RAATTY	2 cut(s)	423, 506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.