Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001211.1

Orthogroup ID

OG0001660

Physical Location & Seq

Genomic Coordinates Forward (+)

112317 .. 114118

Gene Structure 1802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgaatgagcggccggagcaaaatcctaacagggtaagaggaatggcgacggttccagggcaactgatatgggagatagtgaagaagaacaactcttttctggtgaaggagttcggcagaagccacgccggcgttaggttcagcaaggagcccaacaacctcttgaacctccactcctacaagcaatctgggttggcgaacaagaaaactgtggcaattcagcccggtaaggaccaatctgtgctgctggcgacgactaagaccaggaagcagaacaagcctgctgctctgctccacaagtctgtgttgaagaaggacttccgccgaatggccaatgccgtcaatgatcaggtggcaaagaacttctaccgggcagatctgaagcatgcagcccttgcaaggttgagtgctgttcacaggagcctcaaggttgccaagtctggtgcaaagaagaggaacaggcaagctgtcagaatctatggcaggaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

163

Amino Acids

18.41

Weight (kDa)

11.39

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	22 - 141	5.2e-36	Ribosomal L28e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19730 AT2G19730 AT2G19730 AT4G29410 AT4G29410
fragaria_vesca	FvH4_1g06820 FvH4_6g32910
malus_domestica	MD02G1072800.v1.1 MD07G1062600.v1.1 MD09G1196500.v1.1 MD15G1202600.v1.1
prunus_persica	Prupe.3G052900_v2.0.a1 Prupe.7G214600_v2.0.a1 Prupe.7G214600_v2.0.a1
pyrus_communis	pycom09g11360 pycom15g18000 pycom17g18620
rosa_chinensis	RchiOBHm_Chr1g0323731 RchiOBHm_Chr2g0092591 RchiOBHm_Chr2g0142381 RchiOBHm_Chr2g0160241 RchiOBHm_Chr5g0080201
rosa_laevigata	RLG00000016326 RLG00000019956
rosa_multiflora	Rmu_sc0001211.1_g000033 Rmu_sc0004296.1_g000002 Rmu_sc0020806.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102670 Rroxscaffold_2G00103250 Rroxscaffold_2G00148940
rosa_rugosa	Rorug02G0027800 Rorug02G0028000 Rorug02G0372400
rosa_samantha	Rh2AG073700 Rh2AG424200 Rh2BG074600 Rh2BG433800 Rh2BG561300 Rh2CG075700 Rh2DG072800 Rh2DG443700 Rh2DG569800 Rh5DG397100
rosa_wichuraiana	Rw0G015000 Rw2G005920 Rw2G045310 Rw5G024190 Rw7G017720 Rw7G039720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	10
AciI	CCGC	2 cut(s)	10, 322
AcoI	YGGCCR	2 cut(s)	11, 330
AcuI	CTGAAG	1 cut(s)	401
AfiI	CCNNNNNNNGG	3 cut(s)	135, 328, 399
AgsI	TTSAA	2 cut(s)	166, 310
AjnI	CCWGG	2 cut(s)	55, 263
AloI	GAACNNNNNNTCC	2 cut(s)	158, 190
AluBI	AGCT	1 cut(s)	467
AluI	AGCT	1 cut(s)	467
AoxI	GGCC	2 cut(s)	11, 330
ApeKI	GCWGC	3 cut(s)	244, 284, 389
Asp700I	GAANNNNTTC	2 cut(s)	110, 317
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	2 cut(s)	225, 371
AsuHPI	GGTGA	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	232
BalI	TGGCCA	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	153
BbvI	GCAGC	3 cut(s)	231, 271, 401
BceAI	ACGGC	1 cut(s)	323
BciT130I	CCWGG	2 cut(s)	57, 265
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	2 cut(s)	225, 371
BglI	GCCNNNNNGGC	1 cut(s)	129
BglII	AGATCT	1 cut(s)	376
BisI	GCNGC	4 cut(s)	11, 245, 285, 390
BlsI	GCNGC	4 cut(s)	12, 246, 286, 391
Bme1390I	CCNGG	4 cut(s)	57, 225, 265, 371
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	3 cut(s)	54, 150, 422
BmrFI	CCNGG	4 cut(s)	57, 225, 265, 371
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	2 cut(s)	225, 371
BsaJI	CCNNGG	1 cut(s)	56
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 328, 399
Bse118I	RCCGGY	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	57, 265
BseDI	CCNNGG	1 cut(s)	56
BseLI	CCNNNNNNNGG	3 cut(s)	135, 328, 399
BseX3I	CGGCCG	1 cut(s)	11
BseXI	GCAGC	3 cut(s)	231, 271, 401
Bsh1285I	CGRYCG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	13, 332
BsiEI	CGRYCG	1 cut(s)	14
BsiSI	CCGG	4 cut(s)	14, 129, 225, 370
BslI	CCNNNNNNNGG	3 cut(s)	135, 328, 399
BsnI	GGCC	2 cut(s)	13, 332
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	2 cut(s)	346, 376
BspACI	CCGC	2 cut(s)	10, 322
BspANI	GGCC	2 cut(s)	13, 332
BspLI	GGNNCC	3 cut(s)	54, 150, 422
BsrBI	CCGCTC	1 cut(s)	10
BsrFI	RCCGGY	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	2 cut(s)	346, 376
Bst2UI	CCWGG	2 cut(s)	57, 265
Bst4CI	ACNGT	2 cut(s)	52, 211
Bst6I	CTCTTC	1 cut(s)	446
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstC8I	GCNNGC	5 cut(s)	130, 249, 282, 387, 465
BstDEI	CTNAG	1 cut(s)	258
BstKTI	GATC	2 cut(s)	349, 379
BstMBI	GATC	2 cut(s)	346, 376
BstMCI	CGRYCG	1 cut(s)	14
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 129, 277, 395
BstNI	CCWGG	2 cut(s)	57, 265
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	4 cut(s)	55, 223, 263, 369
BstV1I	GCAGC	3 cut(s)	231, 271, 401
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BstZI	CGGCCG	1 cut(s)	11
BsuRI	GGCC	2 cut(s)	13, 332
Cac8I	GCNNGC	5 cut(s)	130, 249, 282, 387, 465
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	232
CviAII	CATG	1 cut(s)	386
CviJI	RGCY	9 cut(s)	13, 123, 151, 223, 280, 332, 392, 423, 467
CviKI_1	RGCY	9 cut(s)	13, 123, 151, 223, 280, 332, 392, 423, 467
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	2 cut(s)	348, 378
DpnII	GATC	2 cut(s)	346, 376
EaeI	YGGCCR	2 cut(s)	11, 330
EagI	CGGCCG	1 cut(s)	11
Eam1104I	CTCTTC	1 cut(s)	446
EarI	CTCTTC	1 cut(s)	446
EciI	GGCGGA	1 cut(s)	311
EclXI	CGGCCG	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	232
Eco52I	CGGCCG	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	401
EcoRII	CCWGG	2 cut(s)	55, 263
EcoT38I	GRGCYC	1 cut(s)	153
FaeI	CATG	1 cut(s)	389
FaiI	YATR	3 cut(s)	70, 387, 480
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FatI	CATG	1 cut(s)	385
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	4 cut(s)	11, 245, 285, 390
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	4 cut(s)	11, 245, 285, 390
GluI	GCNGC	4 cut(s)	11, 245, 285, 390
HaeIII	GGCC	2 cut(s)	13, 332
HapII	CCGG	4 cut(s)	14, 129, 225, 370
Hin1II	CATG	1 cut(s)	389
HinfI	GANTC	1 cut(s)	474
HpaII	CCGG	4 cut(s)	14, 129, 225, 370
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	2 cut(s)	381, 473
Hpy188III	TCNNGA	1 cut(s)	163
Hpy8I	GTNNAC	1 cut(s)	415
Hpy99I	CGWCG	2 cut(s)	52, 256
HpyAV	CCTTC	2 cut(s)	100, 307
HpyCH4III	ACNGT	2 cut(s)	52, 211
HpyCH4V	TGCA	3 cut(s)	389, 398, 446
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 129, 277, 395
HpyF3I	CTNAG	1 cut(s)	258
Hsp92II	CATG	1 cut(s)	389
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	346, 376
LmnI	GCTCC	4 cut(s)	16, 148, 297, 420
Lsp1109I	GCAGC	3 cut(s)	231, 271, 401
MalI	GATC	2 cut(s)	348, 378
MbiI	CCGCTC	1 cut(s)	10
MboI	GATC	2 cut(s)	346, 376
MboII	GAAGA	4 cut(s)	94, 97, 322, 463
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	153
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	1 cut(s)	216
MluNI	TGGCCA	1 cut(s)	332
MnlI	CCTC	5 cut(s)	32, 170, 179, 434, 447
Mox20I	TGGCCA	1 cut(s)	332
MreI	CGCCGGCG	1 cut(s)	128
MroNI	GCCGGC	1 cut(s)	128
MroXI	GAANNNNTTC	2 cut(s)	110, 317
MscI	TGGCCA	1 cut(s)	332
Msp20I	TGGCCA	1 cut(s)	332
MspI	CCGG	4 cut(s)	14, 129, 225, 370
MspR9I	CCNGG	4 cut(s)	57, 225, 265, 371
MvaI	CCWGG	2 cut(s)	57, 265
MwoI	GCNNNNNNNGC	4 cut(s)	16, 129, 277, 395
NaeI	GCCGGC	1 cut(s)	130
NciI	CCSGG	2 cut(s)	225, 371
NdeII	GATC	2 cut(s)	346, 376
NgoMIV	GCCGGC	1 cut(s)	128
NlaIII	CATG	1 cut(s)	389
NlaIV	GGNNCC	3 cut(s)	54, 150, 422
NspI	RCATGY	1 cut(s)	389
PaeI	GCATGC	1 cut(s)	389
PdiI	GCCGGC	1 cut(s)	130
PdmI	GAANNNNTTC	2 cut(s)	110, 317
PfeI	GAWTC	1 cut(s)	474
PkrI	GCNGC	4 cut(s)	12, 246, 286, 391
Psp6I	CCWGG	2 cut(s)	55, 263
PspGI	CCWGG	2 cut(s)	55, 263
PspN4I	GGNNCC	3 cut(s)	54, 150, 422
PspPI	GGNCC	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	376
SatI	GCNGC	4 cut(s)	11, 245, 285, 390
Sau3AI	GATC	2 cut(s)	346, 376
Sau96I	GGNCC	1 cut(s)	232
ScrFI	CCNGG	4 cut(s)	57, 225, 265, 371
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	7 cut(s)	140, 162, 171, 354, 404, 432, 469
SgrAI	CRCCGGYG	1 cut(s)	128
SinI	GGWCC	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	1 cut(s)	216
SsiI	CCGC	2 cut(s)	10, 322
StyD4I	CCNGG	4 cut(s)	55, 223, 263, 369
TaaI	ACNGT	2 cut(s)	52, 211
TasI	AATT	1 cut(s)	216
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	474
TseI	GCWGC	3 cut(s)	244, 284, 389
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	232
XceI	RCATGY	1 cut(s)	389
XmnI	GAANNNNTTC	2 cut(s)	110, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.