Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001287.1

Orthogroup ID

OG0007239

Physical Location & Seq

Genomic Coordinates Reverse (-)

114824 .. 116198

Gene Structure 1375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

atgaccagattgggttggaaggcagatggaataagatggatatggtgcagtagcattcttacttcatgtggttcacttgagtctctgaaacatgggagagaagtgcacgcttatactatcagggttgatcttgtctacgaatattatgtgaagaatagtttgattgatatgtatgcaaaatgtgattccctgactgatgcaagaagagtttttgattccatgactgatcataatgtggtctcttacaatgcaatgattgaaggatactcaaggcaggataaggtggctgaagctctggatcttttcaatcttatgaggcttaaattggtccagcctagtatcttgacatttgtcagtcttcttggtgtctcagctgctttattgaccttggaattaagcacgcaaatccatgggctgaccaccaagtacgggttatctttggatatttttgctggcagtgctctcattgatgtttattccaagtgttcatgtattcgcgaagctaaacttgtattcgaggagatgaatgaaaaagacatagtagtgtggaattcaatgttctgcggatacgcccaacagctggaaagtgaagaggctcttaagttgtactcagaactacaattatcaagacaaaatcctaatgagtttacttttgcttccctaatctcagcagccagcaacctagcaagtatccaacatgaggctcgcaaaatatttgattccaaaactttgaaagatgttgcctgttggaattccattatctcaacgtatgcacatcatggagaagcagaaaaagctcttctgatgtttgaaaaaatgatgaatgaggggataaaacccaactatatcacctttgtgggggtgctatcagcttgtagccatgcaggccttatggaagatggacttggtcactttgaatcaatgccttggtttggaatcgaaccagggatagaacattattcttgcatagtttctctcatgggccacactggtaaattatctgaagccaaggaatctattgagaaaatgccagtgaaaccaccagcaattatatggaggagttcactcagttcatgcacagctgcaggtaatgttgaattggggatctacgcagcagagatggcaattttgagtgatccaatggatagtggatcgtatatcttactttcaaatatgtatgcatccgaaggtatgtgggatgatgtcaagagggtgaggaaaaaaatggagtataatggtgtagtgaaagaaaccggacgtagttggttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

423

Amino Acids

47.38

Weight (kDa)

5.54

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	78 - 121	1.8e-11	PPR repeat family
PPR_1	PF12854	78 - 106	6.1e-06	PPR repeat
PPR_3	PF13812	78 - 123	6.5e-06	Pentatricopeptide repeat domain
PPR	PF01535	80 - 106	8.1e-07	PPR repeat
PPR_2	PF13041	178 - 224	1.5e-09	PPR repeat family
PPR_2	PF13041	245 - 293	1.4e-10	PPR repeat family
PPR_3	PF13812	246 - 292	6.2e-06	Pentatricopeptide repeat domain
PPR	PF01535	249 - 278	2.7e-06	PPR repeat
E_motif	PF20431	364 - 422	1.5e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39530
fragaria_vesca	FvH4_1g22400 FvH4_1g22550
malus_domestica	MD01G1019600.v1.1
prunus_persica	Prupe.6G172600_v2.0.a1
pyrus_communis	pycom01g04910
rosa_chinensis	RchiOBHm_Chr2g0116541
rosa_laevigata	RLG00000018286
rosa_multiflora	Rmu_sc0001287.1_g000020 Rmu_sc0001287.1_g000021 Rmu_sc0003255.1_g000001 Rmu_sc0003255.1_g000019 Rmu_sc0004191.1_g000031
rosa_roxburghii	Rroxscaffold_2G00127080 Rroxscaffold_2G00127100
rosa_rugosa	Rorug02G0207400 Rorug02G0207500
rosa_samantha	Rh2AG262400 Rh2BG273600 Rh2BG273900 Rh2BG274000 Rh2DG265300 Rh2DG270600 Rh2DG289100
rosa_wichuraiana	Rw2G020660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1076
AccB7I	CCANNNNNTGG	1 cut(s)	580
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	1 cut(s)	498
AciI	CCGC	1 cut(s)	564
AclWI	GGATC	4 cut(s)	306, 1112, 1130, 1159
AcsI	RAATTY	2 cut(s)	550, 751
AcuI	CTGAAG	2 cut(s)	309, 1023
AfaI	GTAC	2 cut(s)	428, 608
AfiI	CCNNNNNNNGG	5 cut(s)	429, 580, 700, 858, 932
AflII	CTTAAG	1 cut(s)	599
AgsI	TTSAA	8 cut(s)	260, 307, 555, 733, 812, 917, 1097, 1170
AjnI	CCWGG	1 cut(s)	943
AjuI	GAANNNNNNNTTGG	2 cut(s)	888, 920
AleI	CACNNNNGTG	1 cut(s)	854
AluBI	AGCT	7 cut(s)	293, 374, 503, 580, 797, 872, 1082
AluI	AGCT	7 cut(s)	293, 374, 503, 580, 797, 872, 1082
Alw21I	GWGCWC	2 cut(s)	108, 463
Alw26I	GTCTC	3 cut(s)	87, 244, 373
Alw44I	GTGCAC	1 cut(s)	104
AlwI	GGATC	4 cut(s)	306, 1112, 1130, 1159
AoxI	GGCC	2 cut(s)	886, 982
ApaLI	GTGCAC	1 cut(s)	104
ApeKI	GCWGC	4 cut(s)	374, 671, 1082, 1112
ApoI	RAATTY	2 cut(s)	550, 751
AspS9I	GGNCC	2 cut(s)	328, 982
AsuHPI	GGTGA	2 cut(s)	841, 1225
AvaII	GGWCC	1 cut(s)	328
BaeGI	GKGCMC	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	2 cut(s)	108, 463
BbvI	GCAGC	4 cut(s)	361, 683, 1069, 1124
BccI	CCATC	4 cut(s)	20, 30, 893, 1114
BciT130I	CCWGG	1 cut(s)	945
BciVI	GTATCC	3 cut(s)	257, 560, 701
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	3 cut(s)	87, 244, 373
BfaI	CTAG	2 cut(s)	336, 683
BfmI	CTRYAG	1 cut(s)	1083
BfrI	CTTAAG	1 cut(s)	599
BfuAI	ACCTGC	1 cut(s)	1076
BfuI	GTATCC	3 cut(s)	257, 560, 701
BglI	GCCNNNNNGGC	1 cut(s)	885
BisI	GCNGC	4 cut(s)	375, 672, 1083, 1113
BlsI	GCNGC	4 cut(s)	376, 673, 1084, 1114
Bme1390I	CCNGG	1 cut(s)	945
Bme18I	GGWCC	1 cut(s)	328
BmgT120I	GGNCC	2 cut(s)	328, 982
BmrFI	CCNGG	1 cut(s)	945
BmsI	GCATC	2 cut(s)	187, 1190
BoxI	GACNNNNGTC	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	350
BpuEI	CTTGAG	2 cut(s)	98, 253
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	5 cut(s)	387, 409, 926, 944, 1008
BsaWI	WCCGGW	1 cut(s)	1253
Bsc4I	CCNNNNNNNGG	5 cut(s)	429, 580, 700, 858, 932
Bse1I	ACTGG	2 cut(s)	994, 1031
Bse3DI	GCAATG	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	945
BseDI	CCNNGG	5 cut(s)	387, 409, 926, 944, 1008
BseGI	GGATG	2 cut(s)	1181, 1204
BseLI	CCNNNNNNNGG	5 cut(s)	429, 580, 700, 858, 932
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	4 cut(s)	384, 624, 681, 1081
BseNI	ACTGG	2 cut(s)	994, 1031
BseRI	GAGGAG	2 cut(s)	533, 1072
BseSI	GKGCMC	1 cut(s)	108
BseXI	GCAGC	4 cut(s)	361, 683, 1069, 1124
BsgI	GTGCAG	1 cut(s)	67
Bsh1236I	CGCG	1 cut(s)	498
BshFI	GGCC	2 cut(s)	888, 984
BsiHKAI	GWGCWC	2 cut(s)	108, 463
BsiSI	CCGG	1 cut(s)	1254
BslI	CCNNNNNNNGG	5 cut(s)	429, 580, 700, 858, 932
BsmAI	GTCTC	3 cut(s)	87, 244, 373
BsmI	GAATGC	1 cut(s)	54
BsnI	GGCC	2 cut(s)	888, 984
Bso31I	GGTCTC	1 cut(s)	244
Bsp1286I	GDGCHC	2 cut(s)	108, 463
Bsp143I	GATC	6 cut(s)	127, 226, 298, 1104, 1135, 1151
Bsp19I	CCATGG	1 cut(s)	409
Bsp68I	TCGCGA	1 cut(s)	498
BspACI	CCGC	1 cut(s)	564
BspANI	GGCC	2 cut(s)	888, 984
BspCNI	CTCAG	4 cut(s)	383, 623, 680, 1080
BspFNI	CGCG	1 cut(s)	498
BspMAI	CTGCAG	1 cut(s)	1087
BspMI	ACCTGC	1 cut(s)	1076
BspPI	GGATC	4 cut(s)	306, 1112, 1130, 1159
BspQI	GCTCTTC	1 cut(s)	804
BspTI	CTTAAG	1 cut(s)	599
BspTNI	GGTCTC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	2 cut(s)	994, 1031
BssECI	CCNNGG	5 cut(s)	387, 409, 926, 944, 1008
BssMI	GATC	6 cut(s)	127, 226, 298, 1104, 1135, 1151
BssT1I	CCWWGG	4 cut(s)	387, 409, 926, 1008
Bst2UI	CCWGG	1 cut(s)	945
Bst6I	CTCTTC	3 cut(s)	199, 585, 804
BstAFI	CTTAAG	1 cut(s)	599
BstC8I	GCNNGC	6 cut(s)	108, 401, 454, 676, 706, 886
BstDEI	CTNAG	4 cut(s)	370, 610, 667, 1067
BstDSI	CCRYGG	1 cut(s)	409
BstF5I	GGATG	2 cut(s)	1181, 1204
BstFNI	CGCG	1 cut(s)	498
BstKTI	GATC	6 cut(s)	130, 229, 301, 1107, 1138, 1154
BstMAI	GTCTC	3 cut(s)	87, 244, 373
BstMBI	GATC	6 cut(s)	127, 226, 298, 1104, 1135, 1151
BstMWI	GCNNNNNNNGC	4 cut(s)	458, 794, 885, 1121
BstNI	CCWGG	1 cut(s)	945
BstPAI	GACNNNNGTC	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	943
BstSFI	CTRYAG	1 cut(s)	1083
BstSLI	GKGCMC	1 cut(s)	108
BstUI	CGCG	1 cut(s)	498
BstV1I	GCAGC	4 cut(s)	361, 683, 1069, 1124
BstV2I	GAAGAC	1 cut(s)	350
BstX2I	RGATCY	2 cut(s)	298, 1104
BstYI	RGATCY	2 cut(s)	298, 1104
BsuI	GTATCC	3 cut(s)	257, 560, 701
BsuRI	GGCC	2 cut(s)	888, 984
BtgI	CCRYGG	1 cut(s)	409
BtsCI	GGATG	2 cut(s)	1181, 1204
BtsI	GCAGTG	1 cut(s)	463
BtsIMutI	CAGTG	3 cut(s)	463, 987, 1038
BtuMI	TCGCGA	1 cut(s)	498
BveI	ACCTGC	1 cut(s)	1076
Cac8I	GCNNGC	6 cut(s)	108, 401, 454, 676, 706, 886
Cfr13I	GGNCC	2 cut(s)	328, 982
Csp6I	GTAC	2 cut(s)	427, 607
CviQI	GTAC	2 cut(s)	427, 607
DdeI	CTNAG	4 cut(s)	370, 610, 667, 1067
DpnI	GATC	6 cut(s)	129, 228, 300, 1106, 1137, 1153
DpnII	GATC	6 cut(s)	127, 226, 298, 1104, 1135, 1151
Eam1104I	CTCTTC	3 cut(s)	199, 585, 804
EarI	CTCTTC	3 cut(s)	199, 585, 804
Eco130I	CCWWGG	4 cut(s)	387, 409, 926, 1008
Eco147I	AGGCCT	1 cut(s)	888
Eco31I	GGTCTC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	328
Eco57I	CTGAAG	2 cut(s)	309, 1023
EcoRI	GAATTC	2 cut(s)	550, 751
EcoRII	CCWGG	1 cut(s)	943
EcoT14I	CCWWGG	4 cut(s)	387, 409, 926, 1008
EcoT22I	ATGCAT	1 cut(s)	1183
ErhI	CCWWGG	4 cut(s)	387, 409, 926, 1008
FalI	AAGNNNNNCTT	6 cut(s)	492, 524, 582, 614, 888, 920
FbaI	TGATCA	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	4 cut(s)	375, 672, 1083, 1113
FokI	GGATG	2 cut(s)	1168, 1211
Fsp4HI	GCNGC	4 cut(s)	375, 672, 1083, 1113
FspBI	CTAG	2 cut(s)	336, 683
GluI	GCNGC	4 cut(s)	375, 672, 1083, 1113
HaeIII	GGCC	2 cut(s)	888, 984
HapII	CCGG	1 cut(s)	1254
HinfI	GANTC	7 cut(s)	80, 185, 215, 719, 917, 936, 1013
HpaII	CCGG	1 cut(s)	1254
HphI	GGTGA	2 cut(s)	841, 1225
Hpy166II	GTNNAC	5 cut(s)	74, 106, 136, 648, 1064
Hpy188I	TCNGA	5 cut(s)	87, 613, 804, 1003, 1186
Hpy188III	TCNNGA	5 cut(s)	296, 343, 497, 627, 1207
Hpy8I	GTNNAC	5 cut(s)	74, 106, 136, 648, 1064
HpyAV	CCTTC	3 cut(s)	13, 254, 1181
HpyCH4IV	ACGT	2 cut(s)	767, 1258
HpyF10VI	GCNNNNNNNGC	4 cut(s)	458, 794, 885, 1121
HpyF3I	CTNAG	4 cut(s)	370, 610, 667, 1067
HpySE526I	ACGT	2 cut(s)	767, 1258
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	6 cut(s)	127, 226, 298, 1104, 1135, 1151
LguI	GCTCTTC	1 cut(s)	804
Lsp1109I	GCAGC	4 cut(s)	361, 683, 1069, 1124
LweI	GCATC	2 cut(s)	187, 1190
MaeI	CTAG	2 cut(s)	336, 683
MaeII	ACGT	2 cut(s)	767, 1258
MaeIII	GTNAC	1 cut(s)	908
MalI	GATC	6 cut(s)	129, 228, 300, 1106, 1137, 1153
MboI	GATC	6 cut(s)	127, 226, 298, 1104, 1135, 1151
MboII	GAAGA	6 cut(s)	163, 216, 350, 602, 791, 908
MflI	RGATCY	2 cut(s)	298, 1104
MhlI	GDGCHC	2 cut(s)	108, 463
MluCI	AATT	9 cut(s)	323, 392, 550, 620, 751, 995, 1047, 1097, 1125
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	2 cut(s)	718, 728
MnlI	CCTC	8 cut(s)	309, 511, 586, 694, 820, 1050, 1203, 1209
Mph1103I	ATGCAT	1 cut(s)	1183
MseI	TTAA	3 cut(s)	321, 395, 600
MslI	CAYNNNNRTG	2 cut(s)	542, 854
MspA1I	CMGCKG	3 cut(s)	374, 580, 1082
MspCI	CTTAAG	1 cut(s)	599
MspI	CCGG	1 cut(s)	1254
MspR9I	CCNGG	1 cut(s)	945
Mva1269I	GAATGC	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	945
MvnI	CGCG	1 cut(s)	498
MwoI	GCNNNNNNNGC	4 cut(s)	458, 794, 885, 1121
NcoI	CCATGG	1 cut(s)	409
NdeII	GATC	6 cut(s)	127, 226, 298, 1104, 1135, 1151
NmuCI	GTSAC	1 cut(s)	908
NruI	TCGCGA	1 cut(s)	498
NsiI	ATGCAT	1 cut(s)	1183
OliI	CACNNNNGTG	1 cut(s)	854
PceI	AGGCCT	1 cut(s)	888
PciSI	GCTCTTC	1 cut(s)	804
PctI	GAATGC	1 cut(s)	54
PfeI	GAWTC	6 cut(s)	185, 215, 719, 917, 936, 1013
PflFI	GACNNNGTC	1 cut(s)	906
PflMI	CCANNNNNTGG	1 cut(s)	580
PkrI	GCNGC	4 cut(s)	376, 673, 1084, 1114
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PshAI	GACNNNNGTC	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	943
PspGI	CCWGG	1 cut(s)	943
PspPI	GGNCC	2 cut(s)	328, 982
PstI	CTGCAG	1 cut(s)	1087
PsuI	RGATCY	2 cut(s)	298, 1104
PsyI	GACNNNGTC	1 cut(s)	906
PvuII	CAGCTG	3 cut(s)	374, 580, 1082
RruI	TCGCGA	1 cut(s)	498
RsaI	GTAC	2 cut(s)	428, 608
RsaNI	GTAC	2 cut(s)	427, 607
RseI	CAYNNNNRTG	2 cut(s)	542, 854
SapI	GCTCTTC	1 cut(s)	804
SaqAI	TTAA	3 cut(s)	321, 395, 600
SatI	GCNGC	4 cut(s)	375, 672, 1083, 1113
Sau3AI	GATC	6 cut(s)	127, 226, 298, 1104, 1135, 1151
Sau96I	GGNCC	2 cut(s)	328, 982
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	945
SduI	GDGCHC	2 cut(s)	108, 463
SfaNI	GCATC	2 cut(s)	187, 1190
SfcI	CTRYAG	1 cut(s)	1083
SinI	GGWCC	1 cut(s)	328
SmiMI	CAYNNNNRTG	2 cut(s)	542, 854
SmlI	CTYRAG	3 cut(s)	77, 268, 599
SmoI	CTYRAG	3 cut(s)	77, 268, 599
Sse9I	AATT	9 cut(s)	323, 392, 550, 620, 751, 995, 1047, 1097, 1125
SseBI	AGGCCT	1 cut(s)	888
SsiI	CCGC	1 cut(s)	564
SspI	AATATT	2 cut(s)	143, 714
SspMI	CTAG	2 cut(s)	336, 683
StuI	AGGCCT	1 cut(s)	888
StyD4I	CCNGG	1 cut(s)	943
StyI	CCWWGG	4 cut(s)	387, 409, 926, 1008
TaiI	ACGT	2 cut(s)	770, 1261
TaqI	TCGA	2 cut(s)	516, 939
TasI	AATT	9 cut(s)	323, 392, 550, 620, 751, 995, 1047, 1097, 1125
TatI	WGTACW	1 cut(s)	606
TfiI	GAWTC	6 cut(s)	185, 215, 719, 917, 936, 1013
Tru1I	TTAA	3 cut(s)	321, 395, 600
Tru9I	TTAA	3 cut(s)	321, 395, 600
TscAI	CASTG	3 cut(s)	463, 994, 1038
TseFI	GTSAC	1 cut(s)	908
TseI	GCWGC	4 cut(s)	374, 671, 1082, 1112
Tsp45I	GTSAC	1 cut(s)	908
TspDTI	ATGAA	6 cut(s)	54, 477, 539, 543, 836, 1062
TspRI	CASTG	3 cut(s)	463, 994, 1038
Tth111I	GACNNNGTC	1 cut(s)	906
Van91I	CCANNNNNTGG	1 cut(s)	580
Vha464I	CTTAAG	1 cut(s)	599
VneI	GTGCAC	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	328
XapI	RAATTY	2 cut(s)	550, 751
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1050
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	2 cut(s)	336, 683
Zsp2I	ATGCAT	1 cut(s)	1183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.