Rmu_sc0001308.1_g000025

RNA binding

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001308.1
Physical Location & Seq
Reverse (-)
76069 .. 78198
2130 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1308 bp
atggaggctgaggcggattgggtctcgaccaagtcgctgtacatatgtagcatggagagatatatggacgagagcgtgattacacagtgttacagtgtccaggccatcaacttgaccgacttgctctccttttccgatactccgattaccatctctttctccagatctccaccaatcaaagctatgggatctccaccaaccaaagtccaagacgatatcctgcgagaagttgattttcttcaaggcaacgacgttccctacgagatgggtttcggtgtgtttggatctcagattgttttggccggcggacttcaacttccacaaatatatccgacttccaaggtctacgtgttggacaccttgcgagataagcccaagttcatcaaacgcaaagccaacaaacccaaagctaaagctcgtgatcatggttttccggaatttcaatcaccaaaatatcttccccagctgatggagatcgagggtaaactgtacgctctcgaattaaagcctgaagaagacttccccagctcctcgtcctttgaggtatttgacccccaaaccggatcatgggccgctcttccggatcatccgattatcgaatgtggtggtctcctctcctgcgcagttgtgggcaccaagttcttgatctctgctcgggatactccggcctactgctttgacgtggcggagcctacccgaccatggaatgaacttcgtcttcgtcatgacggccataaactgtacgattataattaccccaattcccttccctttctgcaggtggatattaaatttgatgagtcctcggtcagtttcacccatcttggaggtcaaaaagtatgctttgtgttcttggattggtggatttttgataagatgcgtggggttttcttcacattcgaatattccttttcgaaatctgctgctagtcctgacactcagaccagcagttgtggtgatgatccatatttccgtgtgttttacccctccaactcgaatggtacatccttttctgccaaaacactgggttggcgcacctttgaataccactactggtctgaggaagcttctcccatatctacagaagtgtgcggtttagctgtgcttccactccatcaccatcacagtttatcaacactatcagatgcagcttgcgcctctttgactaaccttagtgctattgcctttggttttattcgccagttgcctgatgagtatgtatatctgagcaacgactcgtccagtgcaaattctgcggatgcaactttttccatcaagaattgtatgctcacttcagtagcagtgtga

Protein Analysis

435

Amino Acids

48.72

Weight (kDa)

5.06

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 143 - 237 2.2e-09 Protein of unknown function (DUF1668)
Kelch_FKB95 PF25210 145 - 233 8.3e-06 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 750
AarI CACCTGC 1 cut(s) 769
Acc16I TGCGCA 1 cut(s) 622
Acc36I ACCTGC 1 cut(s) 769
AccB1I GGYRCC 1 cut(s) 632
AccB7I CCANNNNNTGG 1 cut(s) 469
AccBSI CCGCTC 1 cut(s) 575
AccI GTMKAC 1 cut(s) 345
AccIII TCCGGA 2 cut(s) 433, 580
AciI CCGC 6 cut(s) 14, 306, 573, 686, 1092, 1256
AclWI GGATC 5 cut(s) 196, 292, 571, 591, 956
AcoI YGGCCR 2 cut(s) 300, 730
AcsI RAATTY 3 cut(s) 437, 791, 1249
AcuI CTGAAG 2 cut(s) 531, 1278
AfaI GTAC 4 cut(s) 41, 491, 743, 1003
AfiI CCNNNNNNNGG 4 cut(s) 469, 560, 567, 702
AflIII ACRYGT 1 cut(s) 348
AgsI TTSAA 4 cut(s) 242, 314, 443, 1043
AjiI CACGTC 1 cut(s) 682
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 8 cut(s) 182, 410, 416, 466, 528, 1067, 1100, 1151
AluI AGCT 8 cut(s) 182, 410, 416, 466, 528, 1067, 1100, 1151
Alw26I GTCTC 2 cut(s) 28, 614
AlwI GGATC 5 cut(s) 196, 292, 571, 591, 956
Ama87I CYCGRG 1 cut(s) 654
Aor13HI TCCGGA 2 cut(s) 433, 580
AoxI GGCC 5 cut(s) 102, 300, 570, 666, 730
ApeKI GCWGC 2 cut(s) 923, 1148
ApoI RAATTY 3 cut(s) 437, 791, 1249
AspLEI GCGC 3 cut(s) 623, 1035, 1157
AspS9I GGNCC 1 cut(s) 570
AsuHPI GGTGA 4 cut(s) 438, 808, 968, 1109
AsuII TTCGAA 2 cut(s) 900, 914
AvaI CYCGRG 1 cut(s) 654
BaeGI GKGCMC 1 cut(s) 635
BanI GGYRCC 1 cut(s) 632
BarI GAAGNNNNNNTAC 2 cut(s) 1276, 1308
BauI CACGAG 1 cut(s) 417
BbsI GAAGAC 2 cut(s) 522, 710
BbvCI CCTCAGC 1 cut(s) 9
BbvI GCAGC 2 cut(s) 910, 1160
BccI CCATC 8 cut(s) 113, 158, 259, 463, 828, 1122, 1128, 1280
BceAI ACGGC 1 cut(s) 745
BciT130I CCWGG 1 cut(s) 101
BciVI GTATCC 1 cut(s) 652
BclI TGATCA 1 cut(s) 421
BcoDI GTCTC 2 cut(s) 28, 614
BfaI CTAG 1 cut(s) 927
BfmI CTRYAG 2 cut(s) 776, 1080
BfuAI ACCTGC 1 cut(s) 769
BfuI GTATCC 1 cut(s) 652
BglII AGATCT 1 cut(s) 164
BisI GCNGC 3 cut(s) 573, 924, 1149
BlsI GCNGC 3 cut(s) 574, 925, 1150
Bme1390I CCNGG 1 cut(s) 101
BmeT110I CYCGRG 1 cut(s) 654
BmgBI CACGTC 1 cut(s) 682
BmgT120I GGNCC 1 cut(s) 570
BmiI GGNNCC 2 cut(s) 634, 690
BmrFI CCNGG 1 cut(s) 101
BmrI ACTGGG 1 cut(s) 1034
BmsI GCATC 3 cut(s) 867, 1135, 1249
BmuI ACTGGG 1 cut(s) 1034
BpiI GAAGAC 2 cut(s) 522, 710
BpmI CTGGAG 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 9
Bpu14I TTCGAA 2 cut(s) 900, 914
BsaAI YACGTR 1 cut(s) 349
BsaBI GATNNNNATC 2 cut(s) 149, 473
BsaI GGTCTC 2 cut(s) 28, 614
BsaJI CCNNGG 3 cut(s) 339, 701, 804
BsaWI WCCGGW 3 cut(s) 433, 560, 580
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 4 cut(s) 469, 560, 567, 702
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 4 cut(s) 1029, 1058, 1201, 1242
Bse8I GATNNNNATC 2 cut(s) 149, 473
BseAI TCCGGA 2 cut(s) 433, 580
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 3 cut(s) 339, 701, 804
BseGI GGATG 3 cut(s) 586, 1004, 1264
BseJI GATNNNNATC 2 cut(s) 149, 473
BseLI CCNNNNNNNGG 4 cut(s) 469, 560, 567, 702
BseMII CTCAG 4 cut(s) 302, 953, 1050, 1217
BseNI ACTGG 4 cut(s) 1029, 1058, 1201, 1242
BseRI GAGGAG 2 cut(s) 520, 602
BseSI GKGCMC 1 cut(s) 635
BseXI GCAGC 2 cut(s) 910, 1160
BseYI CCCAGC 2 cut(s) 462, 524
BshFI GGCC 5 cut(s) 104, 302, 572, 668, 732
BshNI GGYRCC 1 cut(s) 632
BsiHKCI CYCGRG 1 cut(s) 654
BsiSI CCGG 5 cut(s) 303, 434, 561, 581, 665
BslI CCNNNNNNNGG 4 cut(s) 469, 560, 567, 702
BsmAI GTCTC 2 cut(s) 28, 614
BsnI GGCC 5 cut(s) 104, 302, 572, 668, 732
Bso31I GGTCTC 2 cut(s) 28, 614
BsoBI CYCGRG 1 cut(s) 654
Bsp119I TTCGAA 2 cut(s) 900, 914
Bsp1286I GDGCHC 1 cut(s) 635
Bsp13I TCCGGA 2 cut(s) 433, 580
Bsp1407I TGTACA 1 cut(s) 39
Bsp143I GATC 9 cut(s) 164, 188, 284, 421, 474, 563, 583, 645, 961
Bsp19I CCATGG 1 cut(s) 701
BspACI CCGC 6 cut(s) 14, 306, 573, 686, 1092, 1256
BspANI GGCC 5 cut(s) 104, 302, 572, 668, 732
BspCNI CTCAG 4 cut(s) 301, 952, 1051, 1218
BspEI TCCGGA 2 cut(s) 433, 580
BspHI TCATGA 1 cut(s) 724
BspLI GGNNCC 2 cut(s) 634, 690
BspMAI CTGCAG 1 cut(s) 780
BspMI ACCTGC 1 cut(s) 769
BspPI GGATC 5 cut(s) 196, 292, 571, 591, 956
BspQI GCTCTTC 1 cut(s) 582
BspT104I TTCGAA 2 cut(s) 900, 914
BspT107I GGYRCC 1 cut(s) 632
BspTNI GGTCTC 2 cut(s) 28, 614
BsrBI CCGCTC 1 cut(s) 575
BsrFI RCCGGY 1 cut(s) 302
BsrGI TGTACA 1 cut(s) 39
BsrI ACTGG 4 cut(s) 1029, 1058, 1201, 1242
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 3 cut(s) 339, 701, 804
BssMI GATC 9 cut(s) 164, 188, 284, 421, 474, 563, 583, 645, 961
BssSI CACGAG 1 cut(s) 417
BssT1I CCWWGG 2 cut(s) 339, 701
Bst2BI CACGAG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 5 cut(s) 87, 95, 489, 741, 1127
Bst6I CTCTTC 1 cut(s) 582
BstAPI GCANNNNNTGC 1 cut(s) 1253
BstAUI TGTACA 1 cut(s) 39
BstBAI YACGTR 1 cut(s) 349
BstBI TTCGAA 2 cut(s) 900, 914
BstC8I GCNNGC 2 cut(s) 304, 1153
BstDEI CTNAG 6 cut(s) 9, 288, 939, 1059, 1172, 1226
BstDSI CCRYGG 1 cut(s) 701
BstF5I GGATG 3 cut(s) 586, 1004, 1264
BstHHI GCGC 3 cut(s) 623, 1035, 1157
BstKTI GATC 9 cut(s) 167, 191, 287, 424, 477, 566, 586, 648, 964
BstMAI GTCTC 2 cut(s) 28, 614
BstMBI GATC 9 cut(s) 164, 188, 284, 421, 474, 563, 583, 645, 961
BstMWI GCNNNNNNNGC 3 cut(s) 370, 1154, 1253
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstSFI CTRYAG 2 cut(s) 776, 1080
BstSLI GKGCMC 1 cut(s) 635
BstV1I GCAGC 2 cut(s) 910, 1160
BstV2I GAAGAC 2 cut(s) 522, 710
BstX2I RGATCY 3 cut(s) 164, 188, 284
BstXI CCANNNNNNTGG 1 cut(s) 1024
BstYI RGATCY 3 cut(s) 164, 188, 284
BsuI GTATCC 1 cut(s) 652
BsuRI GGCC 5 cut(s) 104, 302, 572, 668, 732
BtgI CCRYGG 1 cut(s) 701
BtrI CACGTC 1 cut(s) 682
BtsCI GGATG 3 cut(s) 586, 1004, 1264
BtsI GCAGTG 1 cut(s) 1308
BtsIMutI CAGTG 5 cut(s) 92, 100, 1022, 1249, 1308
BveI ACCTGC 1 cut(s) 769
Cac8I GCNNGC 2 cut(s) 304, 1153
CciI TCATGA 1 cut(s) 724
CfoI GCGC 3 cut(s) 623, 1035, 1157
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 1 cut(s) 570
Csp6I GTAC 4 cut(s) 40, 490, 742, 1002
CviAII CATG 5 cut(s) 52, 425, 567, 702, 725
CviQI GTAC 4 cut(s) 40, 490, 742, 1002
DdeI CTNAG 6 cut(s) 9, 288, 939, 1059, 1172, 1226
DpnI GATC 9 cut(s) 166, 190, 286, 423, 476, 565, 585, 647, 963
DpnII GATC 9 cut(s) 164, 188, 284, 421, 474, 563, 583, 645, 961
EaeI YGGCCR 2 cut(s) 300, 730
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
EciI GGCGGA 3 cut(s) 29, 321, 701
Eco130I CCWWGG 2 cut(s) 339, 701
Eco31I GGTCTC 2 cut(s) 28, 614
Eco32I GATATC 1 cut(s) 217
Eco57I CTGAAG 2 cut(s) 531, 1278
Eco88I CYCGRG 1 cut(s) 654
EcoRII CCWGG 1 cut(s) 99
EcoRV GATATC 1 cut(s) 217
EcoT14I CCWWGG 2 cut(s) 339, 701
ErhI CCWWGG 2 cut(s) 339, 701
FaeI CATG 5 cut(s) 55, 428, 570, 705, 728
FatI CATG 5 cut(s) 51, 424, 566, 701, 724
FauNDI CATATG 1 cut(s) 44
FbaI TGATCA 1 cut(s) 421
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 3 cut(s) 573, 924, 1149
FokI GGATG 3 cut(s) 573, 991, 1271
Fsp4HI GCNGC 3 cut(s) 573, 924, 1149
FspBI CTAG 1 cut(s) 927
FspI TGCGCA 1 cut(s) 622
GlaI GCGC 3 cut(s) 622, 1034, 1156
GluI GCNGC 3 cut(s) 573, 924, 1149
GsaI CCCAGC 2 cut(s) 466, 528
GsuI CTGGAG 1 cut(s) 145
HaeIII GGCC 5 cut(s) 104, 302, 572, 668, 732
HapII CCGG 5 cut(s) 303, 434, 561, 581, 665
HhaI GCGC 3 cut(s) 623, 1035, 1157
Hin1II CATG 5 cut(s) 55, 428, 570, 705, 728
Hin6I GCGC 3 cut(s) 621, 1033, 1155
HinP1I GCGC 3 cut(s) 621, 1033, 1155
HindIII AAGCTT 1 cut(s) 1065
HinfI GANTC 2 cut(s) 800, 1235
HpaII CCGG 5 cut(s) 303, 434, 561, 581, 665
HphI GGTGA 4 cut(s) 438, 808, 968, 1109
Hpy166II GTNNAC 2 cut(s) 346, 485
Hpy188I TCNGA 9 cut(s) 136, 144, 291, 333, 591, 942, 1060, 1144, 1227
Hpy8I GTNNAC 2 cut(s) 346, 485
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 1 cut(s) 776
HpyCH4III ACNGT 5 cut(s) 87, 95, 489, 741, 1127
HpyCH4IV ACGT 3 cut(s) 252, 348, 681
HpyCH4V TGCA 4 cut(s) 778, 1148, 1247, 1262
HpyF10VI GCNNNNNNNGC 3 cut(s) 370, 1154, 1253
HpyF3I CTNAG 6 cut(s) 9, 288, 939, 1059, 1172, 1226
HpySE526I ACGT 3 cut(s) 252, 348, 681
Hsp92II CATG 5 cut(s) 55, 428, 570, 705, 728
HspAI GCGC 3 cut(s) 621, 1033, 1155
Kpn2I TCCGGA 2 cut(s) 433, 580
KroI GCCGGC 1 cut(s) 302
KroNI GCCGGC 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 421
Kzo9I GATC 9 cut(s) 164, 188, 284, 421, 474, 563, 583, 645, 961
LguI GCTCTTC 1 cut(s) 582
LmnI GCTCC 2 cut(s) 533, 688
Lsp1109I GCAGC 2 cut(s) 910, 1160
LweI GCATC 3 cut(s) 867, 1135, 1249
MaeI CTAG 1 cut(s) 927
MaeII ACGT 3 cut(s) 252, 348, 681
MaeIII GTNAC 1 cut(s) 89
MalI GATC 9 cut(s) 166, 190, 286, 423, 476, 565, 585, 647, 963
MbiI CCGCTC 1 cut(s) 575
MboI GATC 9 cut(s) 164, 188, 284, 421, 474, 563, 583, 645, 961
MboII GAAGA 7 cut(s) 230, 449, 524, 527, 569, 710, 883
MflI RGATCY 3 cut(s) 164, 188, 284
MhlI GDGCHC 1 cut(s) 635
MluCI AATT 7 cut(s) 437, 500, 751, 760, 791, 1249, 1279
MlyI GAGTC 2 cut(s) 809, 1229
MmeI TCCRAC 3 cut(s) 333, 356, 1014
MroI TCCGGA 2 cut(s) 433, 580
MroNI GCCGGC 1 cut(s) 302
MseI TTAA 2 cut(s) 503, 789
MspA1I CMGCKG 1 cut(s) 466
MspI CCGG 5 cut(s) 303, 434, 561, 581, 665
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 3 cut(s) 370, 1154, 1253
NaeI GCCGGC 1 cut(s) 304
NcoI CCATGG 1 cut(s) 701
NdeI CATATG 1 cut(s) 44
NdeII GATC 9 cut(s) 164, 188, 284, 421, 474, 563, 583, 645, 961
NgoMIV GCCGGC 1 cut(s) 302
NlaIII CATG 5 cut(s) 55, 428, 570, 705, 728
NlaIV GGNNCC 2 cut(s) 634, 690
NsbI TGCGCA 1 cut(s) 622
NspV TTCGAA 2 cut(s) 900, 914
PagI TCATGA 1 cut(s) 724
PaqCI CACCTGC 1 cut(s) 769
PciSI GCTCTTC 1 cut(s) 582
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PdiI GCCGGC 1 cut(s) 304
PflFI GACNNNGTC 1 cut(s) 31
PflMI CCANNNNNTGG 1 cut(s) 469
PkrI GCNGC 3 cut(s) 574, 925, 1150
PleI GAGTC 2 cut(s) 808, 1229
PpsI GAGTC 2 cut(s) 808, 1229
Ppu21I YACGTR 1 cut(s) 349
PsiI TTATAA 1 cut(s) 750
Psp6I CCWGG 1 cut(s) 99
PspFI CCCAGC 2 cut(s) 462, 524
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 634, 690
PspPI GGNCC 1 cut(s) 570
PstI CTGCAG 1 cut(s) 780
PsuI RGATCY 3 cut(s) 164, 188, 284
PsyI GACNNNGTC 1 cut(s) 31
PvuII CAGCTG 1 cut(s) 466
RsaI GTAC 4 cut(s) 41, 491, 743, 1003
RsaNI GTAC 4 cut(s) 40, 490, 742, 1002
SapI GCTCTTC 1 cut(s) 582
SaqAI TTAA 2 cut(s) 503, 789
SatI GCNGC 3 cut(s) 573, 924, 1149
Sau3AI GATC 9 cut(s) 164, 188, 284, 421, 474, 563, 583, 645, 961
Sau96I GGNCC 1 cut(s) 570
SchI GAGTC 2 cut(s) 809, 1229
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 1 cut(s) 635
SfaNI GCATC 3 cut(s) 867, 1135, 1249
SfcI CTRYAG 2 cut(s) 776, 1080
SfuI TTCGAA 2 cut(s) 900, 914
Sse9I AATT 7 cut(s) 437, 500, 751, 760, 791, 1249, 1279
SsiI CCGC 6 cut(s) 14, 306, 573, 686, 1092, 1256
SspI AATATT 1 cut(s) 905
SspMI CTAG 1 cut(s) 927
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 2 cut(s) 339, 701
TaaI ACNGT 5 cut(s) 87, 95, 489, 741, 1127
TaiI ACGT 3 cut(s) 255, 351, 684
TaqI TCGA 7 cut(s) 26, 477, 498, 597, 900, 914, 995
TaqII GACCGA 2 cut(s) 131, 796
TasI AATT 7 cut(s) 437, 500, 751, 760, 791, 1249, 1279
TatI WGTACW 1 cut(s) 39
TauI GCSGC 1 cut(s) 575
Tru1I TTAA 2 cut(s) 503, 789
Tru9I TTAA 2 cut(s) 503, 789
TscAI CASTG 5 cut(s) 92, 100, 1029, 1249, 1308
TseI GCWGC 2 cut(s) 923, 1148
TspDTI ATGAA 2 cut(s) 370, 723
TspGWI ACGGA 1 cut(s) 962
TspRI CASTG 5 cut(s) 92, 100, 1029, 1249, 1308
Tth111I GACNNNGTC 1 cut(s) 31
Van91I CCANNNNNTGG 1 cut(s) 469
XapI RAATTY 3 cut(s) 437, 791, 1249
XmiI GTMKAC 1 cut(s) 345
XspI CTAG 1 cut(s) 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.