Rmu_sc0001308.1_g000039

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001308.1
OG0005924
Physical Location & Seq
Reverse (-)
129994 .. 137362
7369 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2511 bp
atggaggctgaggcggattgggtctcgaccaagtcgctgtacatatgtagcatggagagatataaggacgagagcgtgcttacacagtgttacagtgtccaggccatcaacttgaccgacttgctctccttttccgatactccgattaccatctctttctccagatctccaccaaccaaagctatgggatctccaccaaccaaagtccaagaccatatcctgcgagaagttgattttcttcaaggcaacgacgttccctacgagatgggtttcggtgtgtttggatctcagattgttttggccggcggacttcaacttccacaaatacatccgacttccaaggtctacgtgttggacaccttgcgagataagcccaagttcatcaaacgcaaagccaacaaacctaaagctaaagctcgtgatcatggttttccggaatttcaatcaccaaaatatcttccccagctgatggagatcgagggtaaactgtacgctgtcgaattaaagcctgaagaagacttccccagctcctcgtcctttgaggtatttgacccccaaaccggatcatgggccgctcttccggatcatcctcccccgattatcgaatgtggtggtctcctctcctgcgcagttgtgggcaccaagttcttgatctctgctggggatactccgacctactgctttgacgtggcggagcctacccgaccatggaatgaacttcgtcttcgtaatgacggccctaaactgtacgattataatgaccccaattcccttccctttctgcaggttttggttttggacttggaggaggataatcataagatattattttcctcctctgggaacgatatactagtcttccacatgaacctgtccaatgatctcgctctcgagcttatagcaaccatacgggtggatattaaatttgatgagtcctcggtcagtttcacccatcttggaggtcaaaaagtatgctttgtgttcttggattggtggatttttgataagatgcgtggggttttcttcacattcgaatattccttttcgaaatctgctgctagtcctgacactcagaccagcagttgtggtgatgatccatatttccgtgtgttttacccctccaactcgaatggtacatccttttctgccaaaacactgggttggcgcacctttgaataccactactggtctgaggaagcttctcccatatctacatatgtgtgcggtttagctgtgcttccactccatcaccggcatcgtgaggagcgtgcaatctgcaaaagctgcggacgctactttcccgatatagaactcttcaatcgtcacttatctatcaatcctcgttgcagatctgagcagcaactcatccagtgcaaattctgcggatgctacttttccaagcaagaattgtttgctcacttcaatggatttgttgacagctccacagagccattggctcctccaactcccacctttgaacaagagaagcctctgggcaatcatgagaatgataacgccttggagatggatcgttcgaaggagcttgtggatgaattagtagagtcagttgaagtttcgaagaaggctgctatggagcagaccgtagaaggttcagtagttgtgcctgggtcgactgattctgcatctcagcagcccgccaacctccctgctgcccagcaccgcagccctgcccagctcgcctactcctcgcaagaccgctacttgctccctgcgcgcgcccctgcgctctctaccttctgcttgctgtacactgtagccattcgcccagcatccccacctgctgcacacctacgcaccagatgtcgacttgactcaacaggctcggattaccacagttgggtaaccgatgttgagaaccatctcacttcaaagggaatattacccataatccaggcacctaaccaggatcttgtgttcgtgcgaacacctacaaagcatgctcaagcagctattttgatgcgacaccatatgaacaaggcactcagattggagtatatgtcgatcaagaatgcaagagagctatgggtagcgctagaagagcgctttggtaatgtccaaaattccctcctccctgacttgaaggttcaatggaagaatctgcgctttgctgatttcaagtctcggtaccctaagaatgggggatatgagggacgtatggacccatataaccgccctaaccaggaaggaaaccgcaagtttggtgtggatacacgtggtggtaatgctacacgtgggagaggaaatcgtggtatccctagccgtaatggtggcgccatgggtcgtggtggtggcaccaacctcctagggaatgctagcaacgtgcacaacgcaagcgaggaactagctgaaagatacagggcatatagggacctgagagagcaagaagtgtaccttgcagaagaagaagaagttggtggagatgtcaatctcaccatagaggacttcaaagctgaagatgaagtgctcaaggatgcagcagactttgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

836

Amino Acids

93.99

Weight (kDa)

5.59

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 144 - 238 1.8e-10 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 756
AarI CACCTGC 1 cut(s) 1807
Acc16I TGCGCA 1 cut(s) 628
Acc36I ACCTGC 2 cut(s) 775, 1807
Acc65I GGTACC 1 cut(s) 2145
AccB1I GGYRCC 5 cut(s) 638, 1915, 2145, 2291, 2312
AccB7I CCANNNNNTGG 1 cut(s) 469
AccBSI CCGCTC 1 cut(s) 575
AccI GTMKAC 3 cut(s) 345, 1631, 1825
AccII CGCG 2 cut(s) 1735, 1737
AccIII TCCGGA 2 cut(s) 433, 580
AclWI GGATC 7 cut(s) 196, 292, 571, 591, 1088, 1536, 1935
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 4 cut(s) 437, 923, 1376, 2080
AcuI CTGAAG 2 cut(s) 531, 2493
AcvI CACGTG 2 cut(s) 2234, 2252
AcyI GRCGYC 1 cut(s) 2292
AdeI CACNNNGTG 1 cut(s) 2237
AfaI GTAC 7 cut(s) 41, 491, 749, 1135, 1769, 2147, 2411
AfeI AGCGCT 2 cut(s) 2052, 2063
AfiI CCNNNNNNNGG 8 cut(s) 469, 560, 567, 708, 840, 1858, 2156, 2200
AflIII ACRYGT 3 cut(s) 348, 2231, 2249
AhlI ACTAGT 1 cut(s) 853
AjiI CACGTC 1 cut(s) 688
AjnI CCWGG 5 cut(s) 99, 1624, 1911, 1923, 2199
AjuI GAANNNNNNNTTGG 4 cut(s) 2049, 2081, 2415, 2447
AloI GAACNNNNNNTCC 2 cut(s) 1919, 1951
Alw21I GWGCWC 2 cut(s) 2346, 2487
Alw26I GTCTC 3 cut(s) 28, 620, 2145
Alw44I GTGCAC 1 cut(s) 2342
AlwI GGATC 7 cut(s) 196, 292, 571, 591, 1088, 1536, 1935
Ama87I CYCGRG 1 cut(s) 890
Aor13HI TCCGGA 2 cut(s) 433, 580
Aor51HI AGCGCT 2 cut(s) 2052, 2063
AoxI GGCC 4 cut(s) 102, 300, 570, 736
ApaLI GTGCAC 1 cut(s) 2342
ApoI RAATTY 4 cut(s) 437, 923, 1376, 2080
Asp718I GGTACC 1 cut(s) 2145
AspA2I CCTAGG 1 cut(s) 2323
AspS9I GGNCC 4 cut(s) 570, 737, 2179, 2389
AsuHPI GGTGA 5 cut(s) 438, 940, 1100, 1241, 2443
AsuII TTCGAA 4 cut(s) 1032, 1046, 1535, 1577
AsuNHI GCTAGC 1 cut(s) 2333
AvaI CYCGRG 1 cut(s) 890
AvaII GGWCC 2 cut(s) 2179, 2389
AvrII CCTAGG 1 cut(s) 2323
BaeGI GKGCMC 2 cut(s) 641, 2346
BanI GGYRCC 5 cut(s) 638, 1915, 2145, 2291, 2312
BauI CACGAG 1 cut(s) 417
BbrPI CACGTG 2 cut(s) 2234, 2252
BbsI GAAGAC 3 cut(s) 522, 716, 850
Bbv12I GWGCWC 2 cut(s) 2346, 2487
BbvCI CCTCAGC 1 cut(s) 9
BccI CCATC 8 cut(s) 113, 158, 259, 463, 960, 1254, 1519, 1887
BceAI ACGGC 2 cut(s) 751, 2265
BciT130I CCWGG 5 cut(s) 101, 1626, 1913, 1925, 2201
BciVI GTATCC 3 cut(s) 658, 2221, 2282
BclI TGATCA 1 cut(s) 421
BcoDI GTCTC 3 cut(s) 28, 620, 2145
BcuI ACTAGT 1 cut(s) 853
BfaI CTAG 7 cut(s) 854, 1059, 2054, 2277, 2324, 2334, 2363
BfmI CTRYAG 2 cut(s) 782, 1773
BfoI RGCGCY 3 cut(s) 2054, 2065, 2295
BfuAI ACCTGC 2 cut(s) 775, 1807
BfuI GTATCC 3 cut(s) 658, 2221, 2282
BglII AGATCT 2 cut(s) 164, 1349
BlnI CCTAGG 1 cut(s) 2323
Bme1390I CCNGG 5 cut(s) 101, 1626, 1913, 1925, 2201
Bme18I GGWCC 2 cut(s) 2179, 2389
BmeT110I CYCGRG 1 cut(s) 890
BmgBI CACGTC 1 cut(s) 688
BmgT120I GGNCC 4 cut(s) 570, 737, 2179, 2389
BmiI GGNNCC 9 cut(s) 640, 696, 1458, 1917, 2147, 2181, 2293, 2314, 2390
BmrFI CCNGG 5 cut(s) 101, 1626, 1913, 1925, 2201
BmrI ACTGGG 1 cut(s) 1166
BmsI GCATC 7 cut(s) 999, 1264, 1376, 1652, 1799, 1968, 2482
BmtI GCTAGC 1 cut(s) 2337
BmuI ACTGGG 1 cut(s) 1166
BpiI GAAGAC 3 cut(s) 522, 716, 850
BpmI CTGGAG 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 9
Bpu14I TTCGAA 4 cut(s) 1032, 1046, 1535, 1577
BpuEI CTTGAG 2 cut(s) 1947, 2471
BsaAI YACGTR 3 cut(s) 349, 2234, 2252
BsaBI GATNNNNATC 3 cut(s) 149, 473, 2445
BsaHI GRCGYC 1 cut(s) 2292
BsaI GGTCTC 2 cut(s) 28, 620
BsaJI CCNNGG 7 cut(s) 339, 707, 936, 1518, 1625, 2295, 2323
BsaWI WCCGGW 3 cut(s) 433, 560, 580
BsaXI ACNNNNNCTCC 4 cut(s) 110, 140, 2003, 2033
Bsc4I CCNNNNNNNGG 8 cut(s) 469, 560, 567, 708, 840, 1858, 2156, 2200
Bse118I RCCGGY 2 cut(s) 302, 1251
Bse1I ACTGG 3 cut(s) 1161, 1190, 1369
Bse8I GATNNNNATC 3 cut(s) 149, 473, 2445
BseAI TCCGGA 2 cut(s) 433, 580
BseBI CCWGG 5 cut(s) 101, 1626, 1913, 1925, 2201
BseDI CCNNGG 7 cut(s) 339, 707, 936, 1518, 1625, 2295, 2323
BseGI GGATG 8 cut(s) 328, 586, 1136, 1365, 1391, 1555, 1790, 2497
BseJI GATNNNNATC 3 cut(s) 149, 473, 2445
BseLI CCNNNNNNNGG 8 cut(s) 469, 560, 567, 708, 840, 1858, 2156, 2200
BseMII CTCAG 7 cut(s) 302, 1085, 1182, 1344, 1661, 2017, 2384
BseNI ACTGG 3 cut(s) 1161, 1190, 1369
BsePI GCGCGC 2 cut(s) 1733, 1735
BseRI GAGGAG 8 cut(s) 520, 608, 821, 826, 1277, 1449, 1696, 2078
BseSI GKGCMC 2 cut(s) 641, 2346
BseYI CCCAGC 6 cut(s) 462, 524, 659, 1674, 1692, 1786
BsgI GTGCAG 1 cut(s) 1788
Bsh1236I CGCG 2 cut(s) 1735, 1737
BshFI GGCC 4 cut(s) 104, 302, 572, 738
BshNI GGYRCC 5 cut(s) 638, 1915, 2145, 2291, 2312
BsiHKAI GWGCWC 2 cut(s) 2346, 2487
BsiHKCI CYCGRG 1 cut(s) 890
BsiSI CCGG 5 cut(s) 303, 434, 561, 581, 1252
BslFI GGGAC 2 cut(s) 2184, 2402
BslI CCNNNNNNNGG 8 cut(s) 469, 560, 567, 708, 840, 1858, 2156, 2200
BsmAI GTCTC 3 cut(s) 28, 620, 2145
BsmFI GGGAC 2 cut(s) 2184, 2402
BsmI GAATGC 2 cut(s) 2035, 2335
BsnI GGCC 4 cut(s) 104, 302, 572, 738
Bso31I GGTCTC 2 cut(s) 28, 620
BsoBI CYCGRG 1 cut(s) 890
Bsp119I TTCGAA 4 cut(s) 1032, 1046, 1535, 1577
Bsp1286I GDGCHC 3 cut(s) 641, 2346, 2487
Bsp13I TCCGGA 2 cut(s) 433, 580
Bsp1407I TGTACA 2 cut(s) 39, 1767
Bsp19I CCATGG 2 cut(s) 707, 2295
BspANI GGCC 4 cut(s) 104, 302, 572, 738
BspCNI CTCAG 7 cut(s) 301, 1084, 1183, 1345, 1660, 2016, 2385
BspEI TCCGGA 2 cut(s) 433, 580
BspFNI CGCG 2 cut(s) 1735, 1737
BspHI TCATGA 1 cut(s) 1501
BspLI GGNNCC 9 cut(s) 640, 696, 1458, 1917, 2147, 2181, 2293, 2314, 2390
BspMAI CTGCAG 1 cut(s) 786
BspMI ACCTGC 2 cut(s) 775, 1807
BspOI GCTAGC 1 cut(s) 2337
BspPI GGATC 7 cut(s) 196, 292, 571, 591, 1088, 1536, 1935
BspQI GCTCTTC 2 cut(s) 582, 2052
BspT104I TTCGAA 4 cut(s) 1032, 1046, 1535, 1577
BspT107I GGYRCC 5 cut(s) 638, 1915, 2145, 2291, 2312
BspTNI GGTCTC 2 cut(s) 28, 620
BsrBI CCGCTC 1 cut(s) 575
BsrFI RCCGGY 2 cut(s) 302, 1251
BsrGI TGTACA 2 cut(s) 39, 1767
BsrI ACTGG 3 cut(s) 1161, 1190, 1369
BssAI RCCGGY 2 cut(s) 302, 1251
BssECI CCNNGG 7 cut(s) 339, 707, 936, 1518, 1625, 2295, 2323
BssHII GCGCGC 2 cut(s) 1733, 1735
BssNI GRCGYC 1 cut(s) 2292
BssSI CACGAG 1 cut(s) 417
BssT1I CCWWGG 5 cut(s) 339, 707, 1518, 2295, 2323
Bst2BI CACGAG 1 cut(s) 417
Bst2UI CCWGG 5 cut(s) 101, 1626, 1913, 1925, 2201
Bst4CI ACNGT 7 cut(s) 87, 95, 489, 747, 1603, 1774, 1856
Bst6I CTCTTC 3 cut(s) 582, 1319, 2052
BstACI GRCGYC 1 cut(s) 2292
BstAPI GCANNNNNTGC 2 cut(s) 1284, 1380
BstAUI TGTACA 2 cut(s) 39, 1767
BstBAI YACGTR 3 cut(s) 349, 2234, 2252
BstBI TTCGAA 4 cut(s) 1032, 1046, 1535, 1577
BstDEI CTNAG 9 cut(s) 9, 288, 1071, 1191, 1353, 1647, 2003, 2151, 2393
BstDSI CCRYGG 2 cut(s) 707, 2295
BstEII GGTNACC 1 cut(s) 1861
BstF5I GGATG 8 cut(s) 328, 586, 1136, 1365, 1391, 1555, 1790, 2497
BstFNI CGCG 2 cut(s) 1735, 1737
BstH2I RGCGCY 3 cut(s) 2054, 2065, 2295
BstMAI GTCTC 3 cut(s) 28, 620, 2145
BstMWI GCNNNNNNNGC 8 cut(s) 370, 1284, 1290, 1380, 1697, 1732, 1967, 2059
BstNI CCWGG 5 cut(s) 101, 1626, 1913, 1925, 2201
BstNSI RCATGY 1 cut(s) 1961
BstPI GGTNACC 1 cut(s) 1861
BstSCI CCNGG 5 cut(s) 99, 1624, 1911, 1923, 2199
BstSFI CTRYAG 2 cut(s) 782, 1773
BstSLI GKGCMC 2 cut(s) 641, 2346
BstUI CGCG 2 cut(s) 1735, 1737
BstV2I GAAGAC 3 cut(s) 522, 716, 850
BstX2I RGATCY 5 cut(s) 164, 188, 284, 1349, 1927
BstXI CCANNNNNNTGG 3 cut(s) 184, 913, 1156
BstYI RGATCY 5 cut(s) 164, 188, 284, 1349, 1927
BsuI GTATCC 3 cut(s) 658, 2221, 2282
BsuRI GGCC 4 cut(s) 104, 302, 572, 738
BtgI CCRYGG 2 cut(s) 707, 2295
BtrI CACGTC 1 cut(s) 688
BtsCI GGATG 8 cut(s) 328, 586, 1136, 1365, 1391, 1555, 1790, 2497
BtsIMutI CAGTG 5 cut(s) 92, 100, 1154, 1376, 1770
BveI ACCTGC 2 cut(s) 775, 1807
CciI TCATGA 1 cut(s) 1501
Cfr10I RCCGGY 2 cut(s) 302, 1251
Cfr13I GGNCC 4 cut(s) 570, 737, 2179, 2389
CseI GACGC 1 cut(s) 1299
Csp6I GTAC 7 cut(s) 40, 490, 748, 1134, 1768, 2146, 2410
CviAII CATG 8 cut(s) 52, 425, 567, 708, 865, 1502, 1958, 2296
CviQI GTAC 7 cut(s) 40, 490, 748, 1134, 1768, 2146, 2410
DdeI CTNAG 9 cut(s) 9, 288, 1071, 1191, 1353, 1647, 2003, 2151, 2393
DinI GGCGCC 1 cut(s) 2293
DraIII CACNNNGTG 1 cut(s) 2237
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 3 cut(s) 582, 1319, 2052
EarI CTCTTC 3 cut(s) 582, 1319, 2052
EciI GGCGGA 3 cut(s) 29, 321, 707
Eco130I CCWWGG 5 cut(s) 339, 707, 1518, 2295, 2323
Eco31I GGTCTC 2 cut(s) 28, 620
Eco47I GGWCC 2 cut(s) 2179, 2389
Eco47III AGCGCT 2 cut(s) 2052, 2063
Eco57I CTGAAG 2 cut(s) 531, 2493
Eco72I CACGTG 2 cut(s) 2234, 2252
Eco88I CYCGRG 1 cut(s) 890
Eco91I GGTNACC 1 cut(s) 1861
EcoO109I RGGNCCY 1 cut(s) 2389
EcoO65I GGTNACC 1 cut(s) 1861
EcoRII CCWGG 5 cut(s) 99, 1624, 1911, 1923, 2199
EcoT14I CCWWGG 5 cut(s) 339, 707, 1518, 2295, 2323
EgeI GGCGCC 1 cut(s) 2293
EheI GGCGCC 1 cut(s) 2293
ErhI CCWWGG 5 cut(s) 339, 707, 1518, 2295, 2323
FaeI CATG 8 cut(s) 55, 428, 570, 711, 868, 1505, 1961, 2299
FalI AAGNNNNNCTT 2 cut(s) 2397, 2429
FaqI GGGAC 2 cut(s) 2184, 2402
FatI CATG 8 cut(s) 51, 424, 566, 707, 864, 1501, 1957, 2295
FauI CCCGC 1 cut(s) 1663
FauNDI CATATG 3 cut(s) 44, 1216, 1989
FbaI TGATCA 1 cut(s) 421
FblI GTMKAC 3 cut(s) 345, 1631, 1825
FokI GGATG 8 cut(s) 315, 573, 1123, 1352, 1398, 1562, 1777, 2504
FspBI CTAG 7 cut(s) 854, 1059, 2054, 2277, 2324, 2334, 2363
FspI TGCGCA 1 cut(s) 628
GsaI CCCAGC 6 cut(s) 466, 528, 663, 1678, 1696, 1790
GsuI CTGGAG 1 cut(s) 145
HaeII RGCGCY 3 cut(s) 2054, 2065, 2295
HaeIII GGCC 4 cut(s) 104, 302, 572, 738
HapII CCGG 5 cut(s) 303, 434, 561, 581, 1252
HgaI GACGC 1 cut(s) 1299
Hin1I GRCGYC 1 cut(s) 2292
Hin1II CATG 8 cut(s) 55, 428, 570, 711, 868, 1505, 1961, 2299
HincII GTYRAC 3 cut(s) 1435, 1632, 1826
HindII GTYRAC 3 cut(s) 1435, 1632, 1826
HindIII AAGCTT 1 cut(s) 1197
HinfI GANTC 5 cut(s) 932, 1562, 1637, 1832, 2116
HpaII CCGG 5 cut(s) 303, 434, 561, 581, 1252
HphI GGTGA 5 cut(s) 438, 940, 1100, 1241, 2443
Hpy166II GTNNAC 8 cut(s) 346, 485, 1435, 1632, 1770, 1826, 2344, 2410
Hpy8I GTNNAC 8 cut(s) 346, 485, 1435, 1632, 1770, 1826, 2344, 2410
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 7 cut(s) 782, 1531, 1576, 1601, 1765, 2095, 2198
HpyCH4III ACNGT 7 cut(s) 87, 95, 489, 747, 1603, 1774, 1856
HpyCH4IV ACGT 7 cut(s) 252, 348, 687, 2173, 2233, 2251, 2340
HpyF10VI GCNNNNNNNGC 8 cut(s) 370, 1284, 1290, 1380, 1697, 1732, 1967, 2059
HpyF3I CTNAG 9 cut(s) 9, 288, 1071, 1191, 1353, 1647, 2003, 2151, 2393
HpySE526I ACGT 7 cut(s) 252, 348, 687, 2173, 2233, 2251, 2340
Hsp92I GRCGYC 1 cut(s) 2292
Hsp92II CATG 8 cut(s) 55, 428, 570, 711, 868, 1505, 1961, 2299
KasI GGCGCC 1 cut(s) 2291
Kpn2I TCCGGA 2 cut(s) 433, 580
KpnI GGTACC 1 cut(s) 2149
KroI GCCGGC 1 cut(s) 302
KroNI GCCGGC 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 421
LguI GCTCTTC 2 cut(s) 582, 2052
LmnI GCTCC 8 cut(s) 533, 694, 1264, 1445, 1462, 1540, 1594, 1731
LweI GCATC 7 cut(s) 999, 1264, 1376, 1652, 1799, 1968, 2482
MaeI CTAG 7 cut(s) 854, 1059, 2054, 2277, 2324, 2334, 2363
MaeII ACGT 7 cut(s) 252, 348, 687, 2173, 2233, 2251, 2340
MaeIII GTNAC 3 cut(s) 89, 1322, 1861
MbiI CCGCTC 1 cut(s) 575
MflI RGATCY 5 cut(s) 164, 188, 284, 1349, 1927
MhlI GDGCHC 3 cut(s) 641, 2346, 2487
MluCI AATT 8 cut(s) 437, 500, 766, 923, 1376, 1406, 1553, 2080
Mly113I GGCGCC 1 cut(s) 2292
MlyI GAGTC 3 cut(s) 941, 1571, 1826
MmeI TCCRAC 5 cut(s) 333, 356, 695, 1146, 1487
MroI TCCGGA 2 cut(s) 433, 580
MroNI GCCGGC 1 cut(s) 302
MseI TTAA 2 cut(s) 503, 921
MslI CAYNNNNRTG 4 cut(s) 911, 1219, 1422, 1506
MspA1I CMGCKG 1 cut(s) 466
MspI CCGG 5 cut(s) 303, 434, 561, 581, 1252
MspR9I CCNGG 5 cut(s) 101, 1626, 1913, 1925, 2201
Mva1269I GAATGC 2 cut(s) 2035, 2335
MvaI CCWGG 5 cut(s) 101, 1626, 1913, 1925, 2201
MvnI CGCG 2 cut(s) 1735, 1737
MwoI GCNNNNNNNGC 8 cut(s) 370, 1284, 1290, 1380, 1697, 1732, 1967, 2059
NaeI GCCGGC 1 cut(s) 304
NarI GGCGCC 1 cut(s) 2292
NcoI CCATGG 2 cut(s) 707, 2295
NdeI CATATG 3 cut(s) 44, 1216, 1989
NgoMIV GCCGGC 1 cut(s) 302
NheI GCTAGC 1 cut(s) 2333
NlaIII CATG 8 cut(s) 55, 428, 570, 711, 868, 1505, 1961, 2299
NlaIV GGNNCC 9 cut(s) 640, 696, 1458, 1917, 2147, 2181, 2293, 2314, 2390
NmuCI GTSAC 1 cut(s) 1322
NsbI TGCGCA 1 cut(s) 628
NspI RCATGY 1 cut(s) 1961
NspV TTCGAA 4 cut(s) 1032, 1046, 1535, 1577
PaeI GCATGC 1 cut(s) 1961
PaeR7I CTCGAG 1 cut(s) 890
PagI TCATGA 1 cut(s) 1501
PaqCI CACCTGC 1 cut(s) 1807
PauI GCGCGC 2 cut(s) 1733, 1735
PciSI GCTCTTC 2 cut(s) 582, 2052
PcsI WCGNNNNNNNCGW 2 cut(s) 258, 1264
PctI GAATGC 2 cut(s) 2035, 2335
PdiI GCCGGC 1 cut(s) 304
PfeI GAWTC 2 cut(s) 1637, 2116
PflFI GACNNNGTC 1 cut(s) 31
PflMI CCANNNNNTGG 1 cut(s) 469
PleI GAGTC 3 cut(s) 940, 1570, 1826
PluTI GGCGCC 1 cut(s) 2295
PmaCI CACGTG 2 cut(s) 2234, 2252
PmlI CACGTG 2 cut(s) 2234, 2252
PpsI GAGTC 3 cut(s) 940, 1570, 1826
Ppu21I YACGTR 3 cut(s) 349, 2234, 2252
PpuMI RGGWCCY 1 cut(s) 2389
PsiI TTATAA 1 cut(s) 756
Psp5II RGGWCCY 1 cut(s) 2389
Psp6I CCWGG 5 cut(s) 99, 1624, 1911, 1923, 2199
PspCI CACGTG 2 cut(s) 2234, 2252
PspEI GGTNACC 1 cut(s) 1861
PspFI CCCAGC 6 cut(s) 462, 524, 659, 1674, 1692, 1786
PspGI CCWGG 5 cut(s) 99, 1624, 1911, 1923, 2199
PspN4I GGNNCC 9 cut(s) 640, 696, 1458, 1917, 2147, 2181, 2293, 2314, 2390
PspPI GGNCC 4 cut(s) 570, 737, 2179, 2389
PspPPI RGGWCCY 1 cut(s) 2389
PstI CTGCAG 1 cut(s) 786
PsuI RGATCY 5 cut(s) 164, 188, 284, 1349, 1927
PsyI GACNNNGTC 1 cut(s) 31
PteI GCGCGC 2 cut(s) 1733, 1735
PvuII CAGCTG 1 cut(s) 466
RsaI GTAC 7 cut(s) 41, 491, 749, 1135, 1769, 2147, 2411
RsaNI GTAC 7 cut(s) 40, 490, 748, 1134, 1768, 2146, 2410
RseI CAYNNNNRTG 4 cut(s) 911, 1219, 1422, 1506
SalI GTCGAC 2 cut(s) 1630, 1824
SapI GCTCTTC 2 cut(s) 582, 2052
SaqAI TTAA 2 cut(s) 503, 921
Sau96I GGNCC 4 cut(s) 570, 737, 2179, 2389
SchI GAGTC 3 cut(s) 941, 1571, 1826
ScrFI CCNGG 5 cut(s) 101, 1626, 1913, 1925, 2201
SduI GDGCHC 3 cut(s) 641, 2346, 2487
SfaNI GCATC 7 cut(s) 999, 1264, 1376, 1652, 1799, 1968, 2482
SfcI CTRYAG 2 cut(s) 782, 1773
SfoI GGCGCC 1 cut(s) 2293
Sfr274I CTCGAG 1 cut(s) 890
SfuI TTCGAA 4 cut(s) 1032, 1046, 1535, 1577
SinI GGWCC 2 cut(s) 2179, 2389
SlaI CTCGAG 1 cut(s) 890
SmiMI CAYNNNNRTG 4 cut(s) 911, 1219, 1422, 1506
SmlI CTYRAG 3 cut(s) 890, 1962, 2486
SmoI CTYRAG 3 cut(s) 890, 1962, 2486
SpeI ACTAGT 1 cut(s) 853
SphI GCATGC 1 cut(s) 1961
Sse9I AATT 8 cut(s) 437, 500, 766, 923, 1376, 1406, 1553, 2080
SspDI GGCGCC 1 cut(s) 2291
SspI AATATT 2 cut(s) 1037, 1899
SspMI CTAG 7 cut(s) 854, 1059, 2054, 2277, 2324, 2334, 2363
StyD4I CCNGG 5 cut(s) 99, 1624, 1911, 1923, 2199
StyI CCWWGG 5 cut(s) 339, 707, 1518, 2295, 2323
TaaI ACNGT 7 cut(s) 87, 95, 489, 747, 1603, 1774, 1856
TaiI ACGT 7 cut(s) 255, 351, 690, 2176, 2236, 2254, 2343
TaqII GACCGA 2 cut(s) 131, 928
TasI AATT 8 cut(s) 437, 500, 766, 923, 1376, 1406, 1553, 2080
TatI WGTACW 2 cut(s) 39, 1767
TauI GCSGC 1 cut(s) 575
TfiI GAWTC 2 cut(s) 1637, 2116
Tru1I TTAA 2 cut(s) 503, 921
Tru9I TTAA 2 cut(s) 503, 921
TscAI CASTG 5 cut(s) 92, 100, 1161, 1376, 1777
TseFI GTSAC 1 cut(s) 1322
Tsp45I GTSAC 1 cut(s) 1322
TspDTI ATGAA 6 cut(s) 370, 729, 881, 1566, 2006, 2493
TspGWI ACGGA 1 cut(s) 1094
TspRI CASTG 5 cut(s) 92, 100, 1161, 1376, 1777
Tth111I GACNNNGTC 1 cut(s) 31
Van91I CCANNNNNTGG 1 cut(s) 469
VneI GTGCAC 1 cut(s) 2342
VpaK11BI GGWCC 2 cut(s) 2179, 2389
XapI RAATTY 4 cut(s) 437, 923, 1376, 2080
XceI RCATGY 1 cut(s) 1961
XcmI CCANNNNNNNNNTGG 1 cut(s) 1450
XhoI CTCGAG 1 cut(s) 890
XmaJI CCTAGG 1 cut(s) 2323
XmiI GTMKAC 3 cut(s) 345, 1631, 1825
XspI CTAG 7 cut(s) 854, 1059, 2054, 2277, 2324, 2334, 2363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.