Rmu_sc0001425.1_g000009

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001425.1
OG0006957
Physical Location & Seq
Forward (+)
31184 .. 32598
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1038 bp
atgggtctaggccacagtttacccctcttagacattgccaaactatttgcgtcacgtggtgtaaaatcctccataataaccacccctgttagtgctgcacttctctccaaacaactccgaacaagcaaaagtttgggttctggaattgaatttcttgtcatcaaattcccatcggctgaagtagggttatctgaagatgctgtatttcattgggctatagatgttgctgccaagtttgggattctgaggctcgtctttcatggagctgattttttccccgttgtgtgcttcattgagtgtgatgttgtaccaacctcacatgaagcttctacgaacttaaaccataatatgcaaatcactataggaaggtgtttgggaggaagtcatggcatatcggccctgtttatttatgcaacaaggcagaagaagataaatcagcgaggggagaggaaggctctgctgatgggtgatgctctgcttgtagaaattgccctggaacttgagtcttctcatcagcaattcatttgggttgtcaagaaagaaaagaatgataaaggagagtggttgcctaatgaaggatttgagcagaggttagaagataagggactaataataagaggctgggctccccaactactaattcttgaacatgaagcagttggggcctttatgactcattgtggttggaactctatccttaaaggagtggctgctggggtgccaatgatcacctggctagtgtctgcagaacaattctacaatgagaaattggtgactcagttgcttgggattggggttgctgttggggctgaaaagtgggatacatttgaggatgatagtctgaagagtgaagccagcatgaagatggaggccatagagaaggctgtgactgaaatcatggtgggtgatgaagcagaggaaatgagaagcagagttaaagagcttggagagatcgaaagcaaggctgttgaagaaggcggttcatcgttctccgatttaactgctcttatagaagagttgaggttccttgggacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

345

Amino Acids

37.86

Weight (kDa)

5.25

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 160 - 260 4.8e-13 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 718
AciI CCGC 1 cut(s) 978
AcsI RAATTY 2 cut(s) 149, 164
AcuI CTGAAG 3 cut(s) 198, 213, 863
AcvI CACGTG 1 cut(s) 56
AdeI CACNNNGTG 1 cut(s) 59
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 2 cut(s) 237, 575
AgsI TTSAA 3 cut(s) 149, 647, 971
AjnI CCWGG 2 cut(s) 492, 731
AjuI GAANNNNNNNTTGG 2 cut(s) 624, 656
AluBI AGCT 3 cut(s) 266, 326, 943
AluI AGCT 3 cut(s) 266, 326, 943
AoxI GGCC 4 cut(s) 10, 396, 663, 870
ApeKI GCWGC 3 cut(s) 95, 227, 710
ApoI RAATTY 2 cut(s) 149, 164
AspS9I GGNCC 3 cut(s) 397, 663, 1032
AsuHPI GGTGA 4 cut(s) 479, 721, 784, 917
AvaII GGWCC 1 cut(s) 1032
BanI GGYRCC 1 cut(s) 718
BanII GRGCYC 1 cut(s) 628
BbrPI CACGTG 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 498
BbvI GCAGC 3 cut(s) 82, 214, 697
BccI CCATC 3 cut(s) 178, 457, 859
BcgI CGANNNNNNTGC 2 cut(s) 983, 1017
BciT130I CCWGG 2 cut(s) 494, 733
BciVI GTATCC 1 cut(s) 814
BclI TGATCA 1 cut(s) 726
BfaI CTAG 2 cut(s) 8, 737
BfmI CTRYAG 3 cut(s) 216, 360, 744
BfuI GTATCC 1 cut(s) 814
BisI GCNGC 3 cut(s) 96, 228, 711
BlsI GCNGC 3 cut(s) 97, 229, 712
Bme1390I CCNGG 2 cut(s) 494, 733
Bme18I GGWCC 1 cut(s) 1032
BmgT120I GGNCC 3 cut(s) 397, 663, 1032
BmiI GGNNCC 5 cut(s) 627, 664, 720, 1025, 1033
BmrFI CCNGG 2 cut(s) 494, 733
BmsI GCATC 2 cut(s) 187, 460
BpiI GAAGAC 1 cut(s) 498
BplI GAGNNNNNCTC 2 cut(s) 439, 471
BpuEI CTTGAG 1 cut(s) 521
BsaAI YACGTR 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 492, 1027
Bsc4I CCNNNNNNNGG 2 cut(s) 237, 575
Bse3DI GCAATG 1 cut(s) 33
BseBI CCWGG 2 cut(s) 494, 733
BseDI CCNNGG 2 cut(s) 492, 1027
BseGI GGATG 1 cut(s) 838
BseLI CCNNNNNNNGG 2 cut(s) 237, 575
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 2 cut(s) 236, 791
BseXI GCAGC 3 cut(s) 82, 214, 697
BseYI CCCAGC 2 cut(s) 621, 713
BsgI GTGCAG 1 cut(s) 81
BshFI GGCC 4 cut(s) 12, 398, 665, 872
BshNI GGYRCC 1 cut(s) 718
BslFI GGGAC 1 cut(s) 618
BslI CCNNNNNNNGG 2 cut(s) 237, 575
BsmFI GGGAC 1 cut(s) 618
BsnI GGCC 4 cut(s) 12, 398, 665, 872
Bsp1286I GDGCHC 1 cut(s) 628
Bsp143I GATC 2 cut(s) 726, 951
BspACI CCGC 1 cut(s) 978
BspANI GGCC 4 cut(s) 12, 398, 665, 872
BspCNI CTCAG 2 cut(s) 237, 790
BspLI GGNNCC 5 cut(s) 627, 664, 720, 1025, 1033
BspMAI CTGCAG 1 cut(s) 748
BspT107I GGYRCC 1 cut(s) 718
BsrDI GCAATG 1 cut(s) 33
BssECI CCNNGG 2 cut(s) 492, 1027
BssMI GATC 2 cut(s) 726, 951
BssT1I CCWWGG 1 cut(s) 1027
Bst2UI CCWGG 2 cut(s) 494, 733
Bst4CI ACNGT 1 cut(s) 17
Bst6I CTCTTC 2 cut(s) 839, 1008
BstBAI YACGTR 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 856
BstDEI CTNAG 3 cut(s) 28, 245, 777
BstENI CCTNNNNNAGG 1 cut(s) 573
BstF5I GGATG 1 cut(s) 838
BstKTI GATC 2 cut(s) 729, 954
BstMBI GATC 2 cut(s) 726, 951
BstMWI GCNNNNNNNGC 2 cut(s) 662, 806
BstNI CCWGG 2 cut(s) 494, 733
BstSCI CCNGG 2 cut(s) 492, 731
BstSFI CTRYAG 3 cut(s) 216, 360, 744
BstV1I GCAGC 3 cut(s) 82, 214, 697
BstV2I GAAGAC 1 cut(s) 498
BsuI GTATCC 1 cut(s) 814
BsuRI GGCC 4 cut(s) 12, 398, 665, 872
BtsCI GGATG 1 cut(s) 838
Cac8I GCNNGC 1 cut(s) 856
Cfr13I GGNCC 3 cut(s) 397, 663, 1032
CseI GACGC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 308
CviAII CATG 6 cut(s) 260, 320, 386, 650, 859, 898
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 3 cut(s) 28, 245, 777
DpnI GATC 2 cut(s) 728, 953
DpnII GATC 2 cut(s) 726, 951
DraIII CACNNNGTG 1 cut(s) 59
Eam1104I CTCTTC 2 cut(s) 839, 1008
EarI CTCTTC 2 cut(s) 839, 1008
Eco130I CCWWGG 1 cut(s) 1027
Eco24I GRGCYC 1 cut(s) 628
Eco47I GGWCC 1 cut(s) 1032
Eco57I CTGAAG 3 cut(s) 198, 213, 863
Eco72I CACGTG 1 cut(s) 56
EcoNI CCTNNNNNAGG 1 cut(s) 573
EcoO109I RGGNCCY 2 cut(s) 663, 1032
EcoRII CCWGG 2 cut(s) 492, 731
EcoT14I CCWWGG 1 cut(s) 1027
EcoT38I GRGCYC 1 cut(s) 628
ErhI CCWWGG 1 cut(s) 1027
FaeI CATG 6 cut(s) 263, 323, 389, 653, 862, 901
FaqI GGGAC 1 cut(s) 618
FatI CATG 6 cut(s) 259, 319, 385, 649, 858, 897
FbaI TGATCA 1 cut(s) 726
Fnu4HI GCNGC 3 cut(s) 96, 228, 711
FokI GGATG 1 cut(s) 845
FriOI GRGCYC 1 cut(s) 628
Fsp4HI GCNGC 3 cut(s) 96, 228, 711
FspBI CTAG 2 cut(s) 8, 737
GluI GCNGC 3 cut(s) 96, 228, 711
GsaI CCCAGC 2 cut(s) 625, 717
HaeIII GGCC 4 cut(s) 12, 398, 665, 872
HgaI GACGC 1 cut(s) 39
Hin1II CATG 6 cut(s) 263, 323, 389, 653, 862, 901
HindIII AAGCTT 1 cut(s) 324
HinfI GANTC 4 cut(s) 241, 503, 673, 775
HphI GGTGA 4 cut(s) 479, 721, 784, 917
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 5 cut(s) 119, 193, 246, 843, 994
Hpy188III TCNNGA 3 cut(s) 141, 535, 644
Hpy8I GTNNAC 1 cut(s) 20
HpyAV CCTTC 5 cut(s) 360, 445, 569, 874, 968
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 4 cut(s) 98, 352, 413, 746
HpyF10VI GCNNNNNNNGC 2 cut(s) 662, 806
HpyF3I CTNAG 3 cut(s) 28, 245, 777
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 6 cut(s) 263, 323, 389, 653, 862, 901
Ksp22I TGATCA 1 cut(s) 726
Kzo9I GATC 2 cut(s) 726, 951
LmnI GCTCC 2 cut(s) 263, 631
Lsp1109I GCAGC 3 cut(s) 82, 214, 697
LweI GCATC 2 cut(s) 187, 460
MaeI CTAG 2 cut(s) 8, 737
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 3 cut(s) 51, 772, 886
MalI GATC 2 cut(s) 728, 953
MboI GATC 2 cut(s) 726, 951
MboII GAAGA 9 cut(s) 206, 436, 439, 498, 608, 856, 874, 983, 1025
MhlI GDGCHC 1 cut(s) 628
MluCI AATT 8 cut(s) 144, 149, 164, 486, 518, 639, 752, 767
MlyI GAGTC 3 cut(s) 512, 667, 769
MmeI TCCRAC 1 cut(s) 665
MseI TTAA 4 cut(s) 338, 699, 936, 998
MslI CAYNNNNRTG 1 cut(s) 863
MspR9I CCNGG 2 cut(s) 494, 733
MvaI CCWGG 2 cut(s) 494, 733
MwoI GCNNNNNNNGC 2 cut(s) 662, 806
NdeII GATC 2 cut(s) 726, 951
NlaIII CATG 6 cut(s) 263, 323, 389, 653, 862, 901
NlaIV GGNNCC 5 cut(s) 627, 664, 720, 1025, 1033
NmuCI GTSAC 3 cut(s) 51, 772, 886
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 3 cut(s) 97, 229, 712
PleI GAGTC 3 cut(s) 511, 667, 769
PmaCI CACGTG 1 cut(s) 56
PmlI CACGTG 1 cut(s) 56
PpsI GAGTC 3 cut(s) 511, 667, 769
Ppu21I YACGTR 1 cut(s) 56
PpuMI RGGWCCY 1 cut(s) 1032
Psp5II RGGWCCY 1 cut(s) 1032
Psp6I CCWGG 2 cut(s) 492, 731
PspCI CACGTG 1 cut(s) 56
PspFI CCCAGC 2 cut(s) 621, 713
PspGI CCWGG 2 cut(s) 492, 731
PspN4I GGNNCC 5 cut(s) 627, 664, 720, 1025, 1033
PspPI GGNCC 3 cut(s) 397, 663, 1032
PspPPI RGGWCCY 1 cut(s) 1032
PstI CTGCAG 1 cut(s) 748
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
RseI CAYNNNNRTG 1 cut(s) 863
SaqAI TTAA 4 cut(s) 338, 699, 936, 998
SatI GCNGC 3 cut(s) 96, 228, 711
Sau3AI GATC 2 cut(s) 726, 951
Sau96I GGNCC 3 cut(s) 397, 663, 1032
SchI GAGTC 3 cut(s) 512, 667, 769
ScrFI CCNGG 2 cut(s) 494, 733
SduI GDGCHC 1 cut(s) 628
SfaNI GCATC 2 cut(s) 187, 460
SfcI CTRYAG 3 cut(s) 216, 360, 744
SinI GGWCC 1 cut(s) 1032
SmiMI CAYNNNNRTG 1 cut(s) 863
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
Sse9I AATT 8 cut(s) 144, 149, 164, 486, 518, 639, 752, 767
SsiI CCGC 1 cut(s) 978
SspMI CTAG 2 cut(s) 8, 737
StyD4I CCNGG 2 cut(s) 492, 731
StyI CCWWGG 1 cut(s) 1027
TaaI ACNGT 1 cut(s) 17
TaiI ACGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 954
TasI AATT 8 cut(s) 144, 149, 164, 486, 518, 639, 752, 767
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 4 cut(s) 338, 699, 936, 998
Tru9I TTAA 4 cut(s) 338, 699, 936, 998
TseFI GTSAC 3 cut(s) 51, 772, 886
TseI GCWGC 3 cut(s) 95, 227, 710
Tsp45I GTSAC 3 cut(s) 51, 772, 886
VpaK11BI GGWCC 1 cut(s) 1032
XagI CCTNNNNNAGG 1 cut(s) 573
XapI RAATTY 2 cut(s) 149, 164
XcmI CCANNNNNNNNNTGG 2 cut(s) 729, 862
XspI CTAG 2 cut(s) 8, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.