Rmu_sc0001932.1_g000011

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001932.1
OG0006158
Physical Location & Seq
Reverse (-)
36899 .. 45136
8238 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1377 bp
atgagtgcagacccttgtgcaattgatacctttctacccacttcattagttagcattaagtctaacaccttgtcgtgttccgcaaggtctccaaatcaggtgatattgctgcagaatatacaaaaggaaggagacgcaaccgacacctccagcgatgaagaagaacaagaccaacaacaacgactgacgaagagggtcatcaacgaagtgagaatcgaagaggagtctgaggcggtcaggggcaaatgggccgccaagattcatgacccggtccgcaagtcccgtgtctggctcgaaacatttcagatggcggaggaggcggcgatggtgtacgacagagctgccattcagttgaggggacataacgctttcacgaatatcatcgctcctccttccaaaattctcattccggatcacgattcttcttcgaatgagtccagttcgatcaacaatctatcttgttcaaatgcgtccaattcgaacgaccatattgttgtgatagataagtatgattccgggaaagagtgtcagagcattcgctcaccgacctctgtttttagtggtagtgacaacgagtggagacctgggtcgaaggagcaggatgaaacccatttcgttaaagactatggttactttgatggtgtgatcagtcccactgaagctatattcttaggtgttacagagccgattctgttggaggaaatgaacttggtgccggaaacaatgttggtgacgtcaaattcaaaaacccagctactaaatttagagcagaacctgttctcgggtggaggaatgggtgttcaattggagggcaagggcggcgttggaagcgagggaaaatcttgggcagtcttcatcaatgggttttcaccattcttcccaaatcctttgtttcctcctatgaaaaaccctaaaaagcgtagagcttctccaccaccaagtaagaagcaaaaggtagctgatgatgagatcgacacagatcaagaaggcattgagcaactctgtgatgtcgtttctgtcagtggagtcaatcttgtggaagagcaagagcacatgttgttgcttccggggcccaagatgcagcaagcatctcgaaaacttgtgtttcaagaaaaccaagaagggctggttttgcagaagattcccctacagaaaaagttggcggatcagctcgcctgggagaagcgtcgaggtaaagatgtaaaccacaaggttacatcaactactggaagaacaatgaatggcaatgtagaagcagagaaaaggggcagtgtagaagctttggtgtctgcagctgggagtgctgttggaaagtttgggaggaatgcccaagttatgatgatcctcaaacaaaagtggctagtactcgtagtataa

Protein Analysis

458

Amino Acids

50.51

Weight (kDa)

5.42

Isoelectric Point (pI)

54.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 80 - 121 6.7e-06 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 737
AccB1I GGYRCC 1 cut(s) 712
AccIII TCCGGA 1 cut(s) 409
AciI CCGC 8 cut(s) 81, 233, 252, 274, 311, 320, 819, 1163
AclWI GGATC 3 cut(s) 420, 1173, 1336
AcsI RAATTY 3 cut(s) 399, 739, 760
AcuI CTGAAG 1 cut(s) 678
AcyI GRCGYC 1 cut(s) 734
AfaI GTAC 2 cut(s) 332, 1365
AfiI CCNNNNNNNGG 2 cut(s) 288, 781
AflIII ACRYGT 1 cut(s) 1053
AgsI TTSAA 4 cut(s) 465, 744, 803, 1109
AjnI CCWGG 2 cut(s) 583, 1175
AloI GAACNNNNNNTCC 2 cut(s) 783, 815
AluBI AGCT 8 cut(s) 341, 662, 754, 926, 959, 1171, 1280, 1295
AluI AGCT 8 cut(s) 341, 662, 754, 926, 959, 1171, 1280, 1295
Alw21I GWGCWC 1 cut(s) 1053
Alw26I GTCTC 3 cut(s) 93, 126, 574
AlwI GGATC 3 cut(s) 420, 1173, 1336
AlwNI CAGNNNCTG 1 cut(s) 775
Ama87I CYCGRG 1 cut(s) 781
Aor13HI TCCGGA 1 cut(s) 409
AoxI GGCC 2 cut(s) 249, 1070
ApaI GGGCCC 1 cut(s) 1074
ApeKI GCWGC 4 cut(s) 109, 341, 1081, 1292
ApoI RAATTY 3 cut(s) 399, 739, 760
Asp700I GAANNNNTTC 2 cut(s) 300, 776
AspS9I GGNCC 4 cut(s) 249, 271, 1070, 1071
AsuC2I CCSGG 3 cut(s) 269, 517, 1068
AsuHPI GGTGA 4 cut(s) 112, 534, 742, 861
AsuII TTCGAA 2 cut(s) 428, 479
AvaI CYCGRG 1 cut(s) 781
AvaII GGWCC 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 1074
BanI GGYRCC 1 cut(s) 712
BanII GRGCYC 1 cut(s) 1074
BbsI GAAGAC 1 cut(s) 844
Bbv12I GWGCWC 1 cut(s) 1053
BbvI GCAGC 4 cut(s) 96, 328, 1093, 1304
BccI CCATC 3 cut(s) 301, 319, 632
BcgI CGANNNNNNTGC 4 cut(s) 323, 357, 1073, 1107
BciT130I CCWGG 2 cut(s) 585, 1177
BclI TGATCA 1 cut(s) 645
BcnI CCSGG 3 cut(s) 269, 517, 1068
BcoDI GTCTC 3 cut(s) 93, 126, 574
BfaI CTAG 1 cut(s) 1361
BfmI CTRYAG 3 cut(s) 110, 1148, 1290
BisI GCNGC 7 cut(s) 110, 252, 321, 342, 820, 1082, 1293
BlsI GCNGC 7 cut(s) 111, 253, 322, 343, 821, 1083, 1294
BmcAI AGTACT 1 cut(s) 1365
Bme1390I CCNGG 5 cut(s) 269, 517, 585, 1068, 1177
Bme18I GGWCC 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 781
BmgT120I GGNCC 4 cut(s) 249, 271, 1070, 1071
BmiI GGNNCC 3 cut(s) 714, 1071, 1072
BmrFI CCNGG 5 cut(s) 269, 517, 585, 1068, 1177
BmsI GCATC 2 cut(s) 1068, 1097
BoxI GACNNNNGTC 1 cut(s) 586
BpiI GAAGAC 1 cut(s) 844
BpmI CTGGAG 1 cut(s) 133
Bpu14I TTCGAA 2 cut(s) 428, 479
BpuMI CCSGG 3 cut(s) 269, 517, 1068
BsaHI GRCGYC 1 cut(s) 734
BsaI GGTCTC 2 cut(s) 93, 574
BsaJI CCNNGG 3 cut(s) 584, 1067, 1176
BsaWI WCCGGW 1 cut(s) 409
Bsc4I CCNNNNNNNGG 2 cut(s) 288, 781
Bse1I ACTGG 2 cut(s) 438, 1231
Bse3DI GCAATG 1 cut(s) 1252
BseAI TCCGGA 1 cut(s) 409
BseBI CCWGG 2 cut(s) 585, 1177
BseDI CCNNGG 3 cut(s) 584, 1067, 1176
BseGI GGATG 1 cut(s) 607
BseLI CCNNNNNNNGG 2 cut(s) 288, 781
BseMI GCAATG 1 cut(s) 1252
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 2 cut(s) 438, 1231
BseRI GAGGAG 3 cut(s) 236, 329, 378
BseSI GKGCMC 1 cut(s) 1074
BseXI GCAGC 4 cut(s) 96, 328, 1093, 1304
BseYI CCCAGC 2 cut(s) 750, 1295
BsgI GTGCAG 1 cut(s) 27
BshFI GGCC 2 cut(s) 251, 1072
BshNI GGYRCC 1 cut(s) 712
BsiHKAI GWGCWC 1 cut(s) 1053
BsiHKCI CYCGRG 1 cut(s) 781
BsiSI CCGG 5 cut(s) 269, 410, 516, 716, 1067
BslFI GGGAC 3 cut(s) 265, 372, 636
BslI CCNNNNNNNGG 2 cut(s) 288, 781
BsmAI GTCTC 3 cut(s) 93, 126, 574
BsmBI CGTCTC 1 cut(s) 126
BsmFI GGGAC 3 cut(s) 265, 372, 636
BsmI GAATGC 2 cut(s) 534, 1330
BsnI GGCC 2 cut(s) 251, 1072
Bso31I GGTCTC 2 cut(s) 93, 574
BsoBI CYCGRG 1 cut(s) 781
Bsp119I TTCGAA 2 cut(s) 428, 479
Bsp120I GGGCCC 1 cut(s) 1070
Bsp1286I GDGCHC 2 cut(s) 1053, 1074
Bsp13I TCCGGA 1 cut(s) 409
Bsp143I GATC 7 cut(s) 412, 444, 645, 969, 979, 1165, 1341
BspACI CCGC 8 cut(s) 81, 233, 252, 274, 311, 320, 819, 1163
BspANI GGCC 2 cut(s) 251, 1072
BspCNI CTCAG 1 cut(s) 220
BspEI TCCGGA 1 cut(s) 409
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 3 cut(s) 714, 1071, 1072
BspMAI CTGCAG 2 cut(s) 114, 1294
BspPI GGATC 3 cut(s) 420, 1173, 1336
BspQI GCTCTTC 1 cut(s) 1035
BspT104I TTCGAA 2 cut(s) 428, 479
BspT107I GGYRCC 1 cut(s) 712
BspTNI GGTCTC 2 cut(s) 93, 574
BsrDI GCAATG 1 cut(s) 1252
BsrI ACTGG 2 cut(s) 438, 1231
BssECI CCNNGG 3 cut(s) 584, 1067, 1176
BssMI GATC 7 cut(s) 412, 444, 645, 969, 979, 1165, 1341
BssNI GRCGYC 1 cut(s) 734
Bst2UI CCWGG 2 cut(s) 585, 1177
Bst6I CTCTTC 3 cut(s) 185, 213, 1035
BstACI GRCGYC 1 cut(s) 734
BstBI TTCGAA 2 cut(s) 428, 479
BstC8I GCNNGC 2 cut(s) 1086, 1173
BstDEI CTNAG 2 cut(s) 228, 670
BstF5I GGATG 1 cut(s) 607
BstKTI GATC 7 cut(s) 415, 447, 648, 972, 982, 1168, 1344
BstMAI GTCTC 3 cut(s) 93, 126, 574
BstMBI GATC 7 cut(s) 412, 444, 645, 969, 979, 1165, 1341
BstMWI GCNNNNNNNGC 7 cut(s) 317, 819, 828, 1069, 1078, 1132, 1301
BstNI CCWGG 2 cut(s) 585, 1177
BstNSI RCATGY 1 cut(s) 1057
BstPAI GACNNNNGTC 1 cut(s) 586
BstSCI CCNGG 5 cut(s) 267, 515, 583, 1066, 1175
BstSFI CTRYAG 3 cut(s) 110, 1148, 1290
BstSLI GKGCMC 1 cut(s) 1074
BstV1I GCAGC 4 cut(s) 96, 328, 1093, 1304
BstV2I GAAGAC 1 cut(s) 844
BsuRI GGCC 2 cut(s) 251, 1072
BtgZI GCGATG 3 cut(s) 168, 338, 367
BtsCI GGATG 1 cut(s) 607
BtsI GCAGTG 1 cut(s) 1276
BtsIMutI CAGTG 3 cut(s) 654, 1027, 1276
Cac8I GCNNGC 2 cut(s) 1086, 1173
CaiI CAGNNNCTG 1 cut(s) 775
CciI TCATGA 1 cut(s) 262
Cfr13I GGNCC 4 cut(s) 249, 271, 1070, 1071
CpoI CGGWCCG 1 cut(s) 271
CseI GACGC 3 cut(s) 143, 459, 1175
Csp6I GTAC 2 cut(s) 331, 1364
CspI CGGWCCG 1 cut(s) 271
CviAII CATG 2 cut(s) 263, 1054
CviQI GTAC 2 cut(s) 331, 1364
DdeI CTNAG 2 cut(s) 228, 670
DpnI GATC 7 cut(s) 414, 446, 647, 971, 981, 1167, 1343
DpnII GATC 7 cut(s) 412, 444, 645, 969, 979, 1165, 1341
Eam1104I CTCTTC 3 cut(s) 185, 213, 1035
EarI CTCTTC 3 cut(s) 185, 213, 1035
EciI GGCGGA 2 cut(s) 326, 1178
Eco24I GRGCYC 1 cut(s) 1074
Eco31I GGTCTC 2 cut(s) 93, 574
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 678
Eco88I CYCGRG 1 cut(s) 781
EcoO109I RGGNCCY 1 cut(s) 1070
EcoRII CCWGG 2 cut(s) 583, 1175
EcoT38I GRGCYC 1 cut(s) 1074
Esp3I CGTCTC 1 cut(s) 126
FaeI CATG 2 cut(s) 266, 1057
FaqI GGGAC 3 cut(s) 265, 372, 636
FatI CATG 2 cut(s) 262, 1053
FbaI TGATCA 1 cut(s) 645
Fnu4HI GCNGC 7 cut(s) 110, 252, 321, 342, 820, 1082, 1293
FokI GGATG 1 cut(s) 614
FriOI GRGCYC 1 cut(s) 1074
Fsp4HI GCNGC 7 cut(s) 110, 252, 321, 342, 820, 1082, 1293
FspBI CTAG 1 cut(s) 1361
GluI GCNGC 7 cut(s) 110, 252, 321, 342, 820, 1082, 1293
GsaI CCCAGC 2 cut(s) 754, 1299
GsuI CTGGAG 1 cut(s) 133
HaeIII GGCC 2 cut(s) 251, 1072
HapII CCGG 5 cut(s) 269, 410, 516, 716, 1067
HgaI GACGC 3 cut(s) 143, 459, 1175
Hin1I GRCGYC 1 cut(s) 734
Hin1II CATG 2 cut(s) 266, 1057
HindIII AAGCTT 1 cut(s) 1278
HinfI GANTC 9 cut(s) 213, 224, 259, 419, 434, 512, 688, 1026, 1141
HpaII CCGG 5 cut(s) 269, 410, 516, 716, 1067
HphI GGTGA 4 cut(s) 112, 534, 742, 861
Hpy166II GTNNAC 2 cut(s) 331, 1204
Hpy188I TCNGA 3 cut(s) 229, 306, 531
Hpy188III TCNNGA 7 cut(s) 263, 373, 410, 416, 983, 1092, 1109
Hpy8I GTNNAC 2 cut(s) 331, 1204
Hpy99I CGWCG 1 cut(s) 1191
HpyAV CCTTC 5 cut(s) 122, 402, 586, 980, 1115
HpyCH4IV ACGT 1 cut(s) 734
HpyCH4V TGCA 6 cut(s) 8, 20, 112, 1081, 1135, 1292
HpyF10VI GCNNNNNNNGC 7 cut(s) 317, 819, 828, 1069, 1078, 1132, 1301
HpyF3I CTNAG 2 cut(s) 228, 670
HpySE526I ACGT 1 cut(s) 734
Hsp92I GRCGYC 1 cut(s) 734
Hsp92II CATG 2 cut(s) 266, 1057
Kpn2I TCCGGA 1 cut(s) 409
Ksp22I TGATCA 1 cut(s) 645
Kzo9I GATC 7 cut(s) 412, 444, 645, 969, 979, 1165, 1341
LguI GCTCTTC 1 cut(s) 1035
LmnI GCTCC 2 cut(s) 391, 595
Lsp1109I GCAGC 4 cut(s) 96, 328, 1093, 1304
LweI GCATC 2 cut(s) 1068, 1097
MaeI CTAG 1 cut(s) 1361
MaeII ACGT 1 cut(s) 734
MaeIII GTNAC 5 cut(s) 566, 629, 676, 730, 1213
MalI GATC 7 cut(s) 414, 446, 647, 971, 981, 1167, 1343
MboI GATC 7 cut(s) 412, 444, 645, 969, 979, 1165, 1341
MfeI CAATTG 2 cut(s) 21, 803
MhlI GDGCHC 2 cut(s) 1053, 1074
MluCI AATT 6 cut(s) 21, 399, 475, 739, 760, 803
MlyI GAGTC 3 cut(s) 233, 443, 1035
MmeI TCCRAC 3 cut(s) 675, 805, 1288
MroI TCCGGA 1 cut(s) 409
MroXI GAANNNNTTC 2 cut(s) 300, 776
MseI TTAA 2 cut(s) 57, 618
MspA1I CMGCKG 1 cut(s) 1295
MspI CCGG 5 cut(s) 269, 410, 516, 716, 1067
MspR9I CCNGG 5 cut(s) 269, 517, 585, 1068, 1177
MunI CAATTG 2 cut(s) 21, 803
Mva1269I GAATGC 2 cut(s) 534, 1330
MvaI CCWGG 2 cut(s) 585, 1177
MwoI GCNNNNNNNGC 7 cut(s) 317, 819, 828, 1069, 1078, 1132, 1301
NciI CCSGG 3 cut(s) 269, 517, 1068
NdeII GATC 7 cut(s) 412, 444, 645, 969, 979, 1165, 1341
NlaIII CATG 2 cut(s) 266, 1057
NlaIV GGNNCC 3 cut(s) 714, 1071, 1072
NmuCI GTSAC 2 cut(s) 566, 730
NspI RCATGY 1 cut(s) 1057
NspV TTCGAA 2 cut(s) 428, 479
PagI TCATGA 1 cut(s) 262
PciI ACATGT 1 cut(s) 1053
PciSI GCTCTTC 1 cut(s) 1035
PctI GAATGC 2 cut(s) 534, 1330
PdmI GAANNNNTTC 2 cut(s) 300, 776
PfeI GAWTC 6 cut(s) 213, 259, 419, 512, 688, 1141
PflFI GACNNNGTC 1 cut(s) 269
PfoI TCCNGGA 1 cut(s) 515
PkrI GCNGC 7 cut(s) 111, 253, 322, 343, 821, 1083, 1294
PleI GAGTC 3 cut(s) 232, 442, 1034
PpsI GAGTC 3 cut(s) 232, 442, 1034
PscI ACATGT 1 cut(s) 1053
PshAI GACNNNNGTC 1 cut(s) 586
Psp6I CCWGG 2 cut(s) 583, 1175
PspFI CCCAGC 2 cut(s) 750, 1295
PspGI CCWGG 2 cut(s) 583, 1175
PspN4I GGNNCC 3 cut(s) 714, 1071, 1072
PspOMI GGGCCC 1 cut(s) 1070
PspPI GGNCC 4 cut(s) 249, 271, 1070, 1071
PstI CTGCAG 2 cut(s) 114, 1294
PstNI CAGNNNCTG 1 cut(s) 775
PsyI GACNNNGTC 1 cut(s) 269
PvuII CAGCTG 1 cut(s) 1295
RsaI GTAC 2 cut(s) 332, 1365
RsaNI GTAC 2 cut(s) 331, 1364
Rsr2I CGGWCCG 1 cut(s) 271
RsrII CGGWCCG 1 cut(s) 271
SapI GCTCTTC 1 cut(s) 1035
SaqAI TTAA 2 cut(s) 57, 618
SatI GCNGC 7 cut(s) 110, 252, 321, 342, 820, 1082, 1293
Sau3AI GATC 7 cut(s) 412, 444, 645, 969, 979, 1165, 1341
Sau96I GGNCC 4 cut(s) 249, 271, 1070, 1071
ScaI AGTACT 1 cut(s) 1365
SchI GAGTC 3 cut(s) 233, 443, 1035
ScrFI CCNGG 5 cut(s) 269, 517, 585, 1068, 1177
SduI GDGCHC 2 cut(s) 1053, 1074
SfaNI GCATC 2 cut(s) 1068, 1097
SfcI CTRYAG 3 cut(s) 110, 1148, 1290
SfuI TTCGAA 2 cut(s) 428, 479
SinI GGWCC 1 cut(s) 271
Sse9I AATT 6 cut(s) 21, 399, 475, 739, 760, 803
SsiI CCGC 8 cut(s) 81, 233, 252, 274, 311, 320, 819, 1163
SspMI CTAG 1 cut(s) 1361
StyD4I CCNGG 5 cut(s) 267, 515, 583, 1066, 1175
TaiI ACGT 1 cut(s) 737
TaqI TCGA 9 cut(s) 216, 294, 428, 443, 479, 590, 972, 1093, 1189
TasI AATT 6 cut(s) 21, 399, 475, 739, 760, 803
TatI WGTACW 1 cut(s) 1363
TauI GCSGC 3 cut(s) 254, 323, 822
TfiI GAWTC 6 cut(s) 213, 259, 419, 512, 688, 1141
Tru1I TTAA 2 cut(s) 57, 618
Tru9I TTAA 2 cut(s) 57, 618
TscAI CASTG 3 cut(s) 661, 1027, 1276
TseFI GTSAC 2 cut(s) 566, 730
TseI GCWGC 4 cut(s) 109, 341, 1081, 1292
Tsp45I GTSAC 2 cut(s) 566, 730
TspDTI ATGAA 8 cut(s) 33, 171, 251, 618, 719, 844, 917, 1253
TspRI CASTG 3 cut(s) 661, 1027, 1276
Tth111I GACNNNGTC 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 3 cut(s) 399, 739, 760
XceI RCATGY 1 cut(s) 1057
XmnI GAANNNNTTC 2 cut(s) 300, 776
XspI CTAG 1 cut(s) 1361
ZraI GACGTC 1 cut(s) 735
ZrmI AGTACT 1 cut(s) 1365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.