Rmu_sc0002313.1_g000016

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002313.1
OG0004033
Physical Location & Seq
Forward (+)
71524 .. 73151
1628 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 936 bp
atgggaaaggggacggggaatccccagtatcttattacggggattggggagggtacggggatggagaatgaagtcaggtatggggatgtcgacgtacatcagcaaaaatccagatacataaacggaatgaggaagcgaagtcgatgggaacgccgggaaactacggcgtttccgttattgaacaccaagcaaggaggcgaactccatcacaaaatcttctggaaaaccagcaaccgattctccacatcatccccaagggatttctcggatcttccccaagaactggtaaccaaaatcggtgcgtcgctcagctacggcaacctaaaagcggcgtcgttggtgtgcaagtcgtggtgcgacgcgcttcggccggcgagaaaggccatgaagtacaaagaatacgagcgttggggaaagcagttcaagcaaggcctctgtggttttctacgtaatatacacaatgctctcaagatgttcttgaaggctgcggagtacggatcaacaagggctatggtagacgccggactgatatattggaagagaggcgagaaagagaaggcctgtgttttgtatcggagagctgcggagctcggagaccggaatgggcagttcaatttgggactttcatatgtgctagttcaacctcctccagaggaagctataaagtggttatctcttgctgcttttcaaggtcatgccggagctcaataccaacttgcacattgtctgcgtcagggtgggaacatggaagaagcggccgggtggtgtttgagagccgcagaaggtggttatgtacgtgctatgtataatgtatccatgtgctacaagtatggggaagggttagttcagtgtgatcaccaagcaagaaagtggatgaagttggcagctgattgtggccacagtaaagctcaagattatgtacttcatcaccagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Sel1

Protein Analysis

311

Amino Acids

35.22

Weight (kDa)

9.48

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sel1 PF08238 266 - 300 3.5e-06 Sel1 repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 283
AccI GTMKAC 2 cut(s) 90, 516
AccII CGCG 1 cut(s) 362
AciI CCGC 5 cut(s) 329, 488, 584, 755, 777
AclWI GGATC 2 cut(s) 276, 505
AcoI YGGCCR 3 cut(s) 368, 756, 895
AcyI GRCGYC 2 cut(s) 332, 519
AfaI GTAC 6 cut(s) 55, 96, 392, 494, 795, 921
AfiI CCNNNNNNNGG 2 cut(s) 283, 328
AgsI TTSAA 6 cut(s) 181, 424, 481, 613, 641, 689
AluBI AGCT 7 cut(s) 312, 581, 589, 659, 704, 887, 908
AluI AGCT 7 cut(s) 312, 581, 589, 659, 704, 887, 908
Alw21I GWGCWC 2 cut(s) 591, 706
Alw26I GTCTC 1 cut(s) 588
AlwI GGATC 2 cut(s) 276, 505
AoxI GGCC 6 cut(s) 368, 381, 430, 558, 756, 895
ApeKI GCWGC 4 cut(s) 485, 581, 680, 884
AspLEI GCGC 1 cut(s) 364
AsuC2I CCSGG 2 cut(s) 155, 760
AsuHPI GGTGA 2 cut(s) 848, 920
BalI TGGCCA 1 cut(s) 897
BanII GRGCYC 2 cut(s) 591, 706
Bbv12I GWGCWC 2 cut(s) 591, 706
BbvI GCAGC 4 cut(s) 472, 568, 667, 896
BccI CCATC 3 cut(s) 55, 138, 213
BceAI ACGGC 2 cut(s) 180, 331
BciVI GTATCC 1 cut(s) 823
BclI TGATCA 1 cut(s) 853
BcnI CCSGG 2 cut(s) 155, 760
BcoDI GTCTC 1 cut(s) 588
BfaI CTAG 1 cut(s) 635
BfuI GTATCC 1 cut(s) 823
BisI GCNGC 7 cut(s) 330, 486, 582, 681, 756, 777, 885
BlpI GCTNAGC 1 cut(s) 308
BlsI GCNGC 7 cut(s) 331, 487, 583, 682, 757, 778, 886
Bme1390I CCNGG 2 cut(s) 155, 760
BmrFI CCNGG 2 cut(s) 155, 760
BmrI ACTGGG 1 cut(s) 19
BmuI ACTGGG 1 cut(s) 19
BplI GAGNNNNNCTC 2 cut(s) 186, 218
BpmI CTGGAG 1 cut(s) 633
Bpu1102I GCTNAGC 1 cut(s) 308
BpuEI CTTGAG 2 cut(s) 452, 894
BpuMI CCSGG 2 cut(s) 155, 760
BsaAI YACGTR 2 cut(s) 449, 797
BsaHI GRCGYC 2 cut(s) 332, 519
BsaI GGTCTC 1 cut(s) 588
BsaJI CCNNGG 1 cut(s) 254
BsaWI WCCGGW 1 cut(s) 597
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 328
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 3 cut(s) 25, 288, 931
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 4 cut(s) 66, 91, 248, 879
BseLI CCNNNNNNNGG 2 cut(s) 283, 328
BseMII CTCAG 1 cut(s) 322
BseNI ACTGG 3 cut(s) 25, 288, 931
BseRI GAGGAG 1 cut(s) 636
BseX3I CGGCCG 2 cut(s) 368, 756
BseXI GCAGC 4 cut(s) 472, 568, 667, 896
Bsh1236I CGCG 1 cut(s) 362
Bsh1285I CGRYCG 2 cut(s) 371, 759
BshFI GGCC 6 cut(s) 370, 383, 432, 560, 758, 897
BsiEI CGRYCG 2 cut(s) 371, 759
BsiHKAI GWGCWC 2 cut(s) 591, 706
BsiSI CCGG 6 cut(s) 154, 371, 522, 598, 699, 759
BslFI GGGAC 2 cut(s) 25, 633
BslI CCNNNNNNNGG 2 cut(s) 283, 328
BsmAI GTCTC 1 cut(s) 588
BsmFI GGGAC 2 cut(s) 25, 633
BsnI GGCC 6 cut(s) 370, 383, 432, 560, 758, 897
Bso31I GGTCTC 1 cut(s) 588
Bsp1286I GDGCHC 2 cut(s) 591, 706
Bsp143I GATC 3 cut(s) 268, 497, 853
Bsp1720I GCTNAGC 1 cut(s) 308
BspACI CCGC 5 cut(s) 329, 488, 584, 755, 777
BspANI GGCC 6 cut(s) 370, 383, 432, 560, 758, 897
BspCNI CTCAG 1 cut(s) 321
BspFNI CGCG 1 cut(s) 362
BspPI GGATC 2 cut(s) 276, 505
BspTNI GGTCTC 1 cut(s) 588
BsrFI RCCGGY 1 cut(s) 370
BsrI ACTGG 3 cut(s) 25, 288, 931
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 3 cut(s) 268, 497, 853
BssNI GRCGYC 2 cut(s) 332, 519
BssT1I CCWWGG 1 cut(s) 254
Bst4CI ACNGT 1 cut(s) 902
Bst6I CTCTTC 1 cut(s) 533
BstACI GRCGYC 2 cut(s) 332, 519
BstBAI YACGTR 2 cut(s) 449, 797
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 1 cut(s) 308
BstEII GGTNACC 1 cut(s) 286
BstF5I GGATG 4 cut(s) 66, 91, 248, 879
BstFNI CGCG 1 cut(s) 362
BstHHI GCGC 1 cut(s) 364
BstKTI GATC 3 cut(s) 271, 500, 856
BstMAI GTCTC 1 cut(s) 588
BstMBI GATC 3 cut(s) 268, 497, 853
BstMCI CGRYCG 2 cut(s) 371, 759
BstMWI GCNNNNNNNGC 2 cut(s) 380, 424
BstPI GGTNACC 1 cut(s) 286
BstSCI CCNGG 2 cut(s) 153, 758
BstSNI TACGTA 1 cut(s) 449
BstUI CGCG 1 cut(s) 362
BstV1I GCAGC 4 cut(s) 472, 568, 667, 896
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BstZI CGGCCG 2 cut(s) 368, 756
BsuI GTATCC 1 cut(s) 823
BsuRI GGCC 6 cut(s) 370, 383, 432, 560, 758, 897
BtsCI GGATG 4 cut(s) 66, 91, 248, 879
BtsIMutI CAGTG 1 cut(s) 854
Cac8I GCNNGC 1 cut(s) 372
CfoI GCGC 1 cut(s) 364
Cfr10I RCCGGY 1 cut(s) 370
CseI GACGC 5 cut(s) 291, 321, 368, 527, 719
Csp6I GTAC 6 cut(s) 54, 95, 391, 493, 794, 920
CviAII CATG 4 cut(s) 385, 695, 745, 817
CviQI GTAC 6 cut(s) 54, 95, 391, 493, 794, 920
DdeI CTNAG 1 cut(s) 308
DpnI GATC 3 cut(s) 270, 499, 855
DpnII GATC 3 cut(s) 268, 497, 853
EaeI YGGCCR 3 cut(s) 368, 756, 895
EagI CGGCCG 2 cut(s) 368, 756
Eam1104I CTCTTC 1 cut(s) 533
EarI CTCTTC 1 cut(s) 533
Ecl136II GAGCTC 2 cut(s) 589, 704
EclXI CGGCCG 2 cut(s) 368, 756
Eco105I TACGTA 1 cut(s) 449
Eco130I CCWWGG 1 cut(s) 254
Eco147I AGGCCT 2 cut(s) 432, 560
Eco24I GRGCYC 2 cut(s) 591, 706
Eco31I GGTCTC 1 cut(s) 588
Eco52I CGGCCG 2 cut(s) 368, 756
Eco53kI GAGCTC 2 cut(s) 589, 704
Eco91I GGTNACC 1 cut(s) 286
EcoICRI GAGCTC 2 cut(s) 589, 704
EcoO65I GGTNACC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 254
EcoT38I GRGCYC 2 cut(s) 591, 706
ErhI CCWWGG 1 cut(s) 254
FaeI CATG 4 cut(s) 388, 698, 748, 820
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FaqI GGGAC 2 cut(s) 25, 633
FatI CATG 4 cut(s) 384, 694, 744, 816
FauNDI CATATG 1 cut(s) 628
FbaI TGATCA 1 cut(s) 853
FblI GTMKAC 2 cut(s) 90, 516
Fnu4HI GCNGC 7 cut(s) 330, 486, 582, 681, 756, 777, 885
FokI GGATG 4 cut(s) 73, 98, 235, 886
FriOI GRGCYC 2 cut(s) 591, 706
Fsp4HI GCNGC 7 cut(s) 330, 486, 582, 681, 756, 777, 885
FspBI CTAG 1 cut(s) 635
GlaI GCGC 1 cut(s) 363
GluI GCNGC 7 cut(s) 330, 486, 582, 681, 756, 777, 885
GsuI CTGGAG 1 cut(s) 633
HaeIII GGCC 6 cut(s) 370, 383, 432, 560, 758, 897
HapII CCGG 6 cut(s) 154, 371, 522, 598, 699, 759
HgaI GACGC 5 cut(s) 291, 321, 368, 527, 719
HhaI GCGC 1 cut(s) 364
Hin1I GRCGYC 2 cut(s) 332, 519
Hin1II CATG 4 cut(s) 388, 698, 748, 820
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 2 cut(s) 19, 237
HpaII CCGG 6 cut(s) 154, 371, 522, 598, 699, 759
HphI GGTGA 2 cut(s) 848, 920
Hpy166II GTNNAC 2 cut(s) 91, 517
Hpy188I TCNGA 3 cut(s) 268, 576, 593
Hpy188III TCNNGA 6 cut(s) 111, 220, 469, 478, 650, 911
Hpy8I GTNNAC 2 cut(s) 91, 517
Hpy99I CGWCG 4 cut(s) 95, 307, 337, 362
HpyAV CCTTC 4 cut(s) 475, 550, 776, 830
HpyCH4III ACNGT 1 cut(s) 902
HpyCH4IV ACGT 3 cut(s) 93, 448, 796
HpyCH4V TGCA 2 cut(s) 345, 719
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 424
HpyF3I CTNAG 1 cut(s) 308
HpySE526I ACGT 3 cut(s) 93, 448, 796
Hsp92I GRCGYC 2 cut(s) 332, 519
Hsp92II CATG 4 cut(s) 388, 698, 748, 820
HspAI GCGC 1 cut(s) 362
KroI GCCGGC 1 cut(s) 370
KroNI GCCGGC 1 cut(s) 372
Ksp22I TGATCA 1 cut(s) 853
Kzo9I GATC 3 cut(s) 268, 497, 853
LmnI GCTCC 2 cut(s) 586, 701
Lsp1109I GCAGC 4 cut(s) 472, 568, 667, 896
MaeI CTAG 1 cut(s) 635
MaeII ACGT 3 cut(s) 93, 448, 796
MaeIII GTNAC 1 cut(s) 286
MalI GATC 3 cut(s) 270, 499, 855
MboI GATC 3 cut(s) 268, 497, 853
MboII GAAGA 4 cut(s) 208, 263, 550, 761
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 2 cut(s) 591, 706
MlsI TGGCCA 1 cut(s) 897
MluCI AATT 1 cut(s) 613
MluNI TGGCCA 1 cut(s) 897
MnlI CCTC 8 cut(s) 43, 123, 188, 443, 536, 646, 654, 657
Mox20I TGGCCA 1 cut(s) 897
MroNI GCCGGC 1 cut(s) 370
MscI TGGCCA 1 cut(s) 897
Msp20I TGGCCA 1 cut(s) 897
MspA1I CMGCKG 1 cut(s) 887
MspI CCGG 6 cut(s) 154, 371, 522, 598, 699, 759
MspR9I CCNGG 2 cut(s) 155, 760
MvnI CGCG 1 cut(s) 362
MwoI GCNNNNNNNGC 2 cut(s) 380, 424
NaeI GCCGGC 1 cut(s) 372
NciI CCSGG 2 cut(s) 155, 760
NdeI CATATG 1 cut(s) 628
NdeII GATC 3 cut(s) 268, 497, 853
NgoMIV GCCGGC 1 cut(s) 370
NlaIII CATG 4 cut(s) 388, 698, 748, 820
PceI AGGCCT 2 cut(s) 432, 560
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PdiI GCCGGC 1 cut(s) 372
PfeI GAWTC 2 cut(s) 19, 237
PflMI CCANNNNNTGG 1 cut(s) 283
PkrI GCNGC 7 cut(s) 331, 487, 583, 682, 757, 778, 886
Ppu21I YACGTR 2 cut(s) 449, 797
Psp124BI GAGCTC 2 cut(s) 591, 706
PspEI GGTNACC 1 cut(s) 286
PsuI RGATCY 1 cut(s) 268
PvuII CAGCTG 1 cut(s) 887
RsaI GTAC 6 cut(s) 55, 96, 392, 494, 795, 921
RsaNI GTAC 6 cut(s) 54, 95, 391, 493, 794, 920
SacI GAGCTC 2 cut(s) 591, 706
SalI GTCGAC 1 cut(s) 89
SatI GCNGC 7 cut(s) 330, 486, 582, 681, 756, 777, 885
Sau3AI GATC 3 cut(s) 268, 497, 853
ScrFI CCNGG 2 cut(s) 155, 760
SduI GDGCHC 2 cut(s) 591, 706
SmlI CTYRAG 2 cut(s) 467, 909
SmoI CTYRAG 2 cut(s) 467, 909
SnaBI TACGTA 1 cut(s) 449
Sse9I AATT 1 cut(s) 613
SseBI AGGCCT 2 cut(s) 432, 560
SsiI CCGC 5 cut(s) 329, 488, 584, 755, 777
SspMI CTAG 1 cut(s) 635
SstI GAGCTC 2 cut(s) 591, 706
StuI AGGCCT 2 cut(s) 432, 560
StyD4I CCNGG 2 cut(s) 153, 758
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 1 cut(s) 902
TaiI ACGT 3 cut(s) 96, 451, 799
TaqI TCGA 2 cut(s) 90, 142
TasI AATT 1 cut(s) 613
TatI WGTACW 2 cut(s) 390, 919
TauI GCSGC 3 cut(s) 332, 758, 779
TfiI GAWTC 2 cut(s) 19, 237
TscAI CASTG 1 cut(s) 854
TseI GCWGC 4 cut(s) 485, 581, 680, 884
TspDTI ATGAA 5 cut(s) 84, 401, 615, 890, 914
TspGWI ACGGA 3 cut(s) 138, 162, 510
TspRI CASTG 1 cut(s) 854
Van91I CCANNNNNTGG 1 cut(s) 283
XmiI GTMKAC 2 cut(s) 90, 516
XspI CTAG 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.