Rmu_sc0002341.1_g000001

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002341.1
OG0003959
Physical Location & Seq
Forward (+)
1351 .. 2296
946 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 606 bp
atgacgaaggtgtacggaacaggcgcgtacgatttcaagcgccaccatgttgccgagtacccggtggagctgaaccaacagctcggagacaagccggtggaggctaaacccggcgcggcgctgccgagctcgataacgctgtcggagattcagagggaccagctcactatgattgcagctgcgaattggtccaaagccggcggtgacgccgggcaggtgaagaaggcgttcgactcggagctggtgaagaagatttacgagacggagttgtgtgtgaaggaggggcagaggaagacggtgccattgcagagagtgatgattttggaggtcagccagtacttggagaactatctctttcccaatttcgatcccgaaacggcgacgttcgagcacgttatgtccatgattctcatgttcaatgagaagtttcgagagaatgtggcagcttgggtatgctttcatgaccggaaagatgcgtttaaaggattccttggaagggttcttcggcttaaatcgttggaacattttattccttcttcctcgttatgtcaagcttgtgtagtgaaactgtatgattgctccggtggtttatgtgattgcccgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

201

Amino Acids

22.65

Weight (kDa)

6.52

Isoelectric Point (pI)

32.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aquarius_N_1st PF16399 55 - 172 1e-33 Intron-binding protein aquarius N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 205
Acc36I ACCTGC 1 cut(s) 205
AccB1I GGYRCC 1 cut(s) 298
AccB7I CCANNNNNTGG 1 cut(s) 340
AccII CGCG 2 cut(s) 26, 116
AciI CCGC 2 cut(s) 116, 201
AclWI GGATC 1 cut(s) 362
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 4 cut(s) 14, 29, 59, 338
AfiI CCNNNNNNNGG 2 cut(s) 340, 496
AgsI TTSAA 2 cut(s) 37, 418
AluBI AGCT 8 cut(s) 70, 82, 129, 163, 179, 241, 446, 554
AluI AGCT 8 cut(s) 70, 82, 129, 163, 179, 241, 446, 554
Alw21I GWGCWC 2 cut(s) 131, 393
Alw26I GTCTC 2 cut(s) 81, 254
AlwI GGATC 1 cut(s) 362
ApeKI GCWGC 4 cut(s) 121, 176, 179, 443
Asp700I GAANNNNTTC 1 cut(s) 227
AspLEI GCGC 4 cut(s) 26, 42, 116, 121
AspS9I GGNCC 2 cut(s) 157, 189
AsuC2I CCSGG 3 cut(s) 62, 111, 211
AsuHPI GGTGA 3 cut(s) 215, 229, 256
AvaII GGWCC 2 cut(s) 157, 189
BanI GGYRCC 1 cut(s) 298
BanII GRGCYC 1 cut(s) 131
BarI GAAGNNNNNNTAC 2 cut(s) 239, 271
BbsI GAAGAC 1 cut(s) 299
Bbv12I GWGCWC 2 cut(s) 131, 393
BbvI GCAGC 4 cut(s) 108, 166, 188, 455
BceAI ACGGC 1 cut(s) 393
BcnI CCSGG 3 cut(s) 62, 111, 211
BcoDI GTCTC 2 cut(s) 81, 254
BfoI RGCGCY 2 cut(s) 43, 122
BfuAI ACCTGC 1 cut(s) 205
BisI GCNGC 5 cut(s) 117, 122, 177, 180, 444
BlsI GCNGC 5 cut(s) 118, 123, 178, 181, 445
BmcAI AGTACT 1 cut(s) 338
Bme1390I CCNGG 3 cut(s) 62, 111, 211
Bme18I GGWCC 2 cut(s) 157, 189
BmgT120I GGNCC 2 cut(s) 157, 189
BmiI GGNNCC 2 cut(s) 158, 300
BmrFI CCNGG 3 cut(s) 62, 111, 211
BmsI GCATC 1 cut(s) 463
BpiI GAAGAC 1 cut(s) 299
BpuMI CCSGG 3 cut(s) 62, 111, 211
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 490
BsaWI WCCGGW 2 cut(s) 465, 581
Bsc4I CCNNNNNNNGG 2 cut(s) 340, 496
Bse118I RCCGGY 2 cut(s) 94, 197
Bse1I ACTGG 1 cut(s) 334
Bse3DI GCAATG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 490
BseLI CCNNNNNNNGG 2 cut(s) 340, 496
BseMI GCAATG 1 cut(s) 302
BseNI ACTGG 1 cut(s) 334
BseXI GCAGC 4 cut(s) 108, 166, 188, 455
Bsh1236I CGCG 2 cut(s) 26, 116
BshNI GGYRCC 1 cut(s) 298
BsiHKAI GWGCWC 2 cut(s) 131, 393
BsiSI CCGG 7 cut(s) 62, 95, 111, 198, 210, 466, 582
BsiWI CGTACG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 340, 496
BsmAI GTCTC 2 cut(s) 81, 254
BsmBI CGTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 131, 393
Bsp143I GATC 1 cut(s) 367
BspACI CCGC 2 cut(s) 116, 201
BspFNI CGCG 2 cut(s) 26, 116
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 2 cut(s) 158, 300
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 1 cut(s) 362
BspT107I GGYRCC 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 302
BsrFI RCCGGY 2 cut(s) 94, 197
BsrI ACTGG 1 cut(s) 334
BssAI RCCGGY 2 cut(s) 94, 197
BssECI CCNNGG 1 cut(s) 490
BssMI GATC 1 cut(s) 367
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 490
Bst4CI ACNGT 2 cut(s) 298, 570
BstACI GRCGYC 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 199
BstFNI CGCG 2 cut(s) 26, 116
BstH2I RGCGCY 2 cut(s) 43, 122
BstHHI GCGC 4 cut(s) 26, 42, 116, 121
BstKTI GATC 1 cut(s) 370
BstMAI GTCTC 2 cut(s) 81, 254
BstMBI GATC 1 cut(s) 367
BstSCI CCNGG 3 cut(s) 60, 109, 209
BstUI CGCG 2 cut(s) 26, 116
BstV1I GCAGC 4 cut(s) 108, 166, 188, 455
BstV2I GAAGAC 1 cut(s) 299
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 199
CciI TCATGA 1 cut(s) 460
CfoI GCGC 4 cut(s) 26, 42, 116, 121
Cfr10I RCCGGY 2 cut(s) 94, 197
Cfr13I GGNCC 2 cut(s) 157, 189
CseI GACGC 1 cut(s) 215
Csp6I GTAC 4 cut(s) 13, 28, 58, 337
CviAII CATG 4 cut(s) 47, 403, 412, 461
CviQI GTAC 4 cut(s) 13, 28, 58, 337
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
DraI TTTAAA 1 cut(s) 481
Ecl136II GAGCTC 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 490
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 157, 189
Eco53kI GAGCTC 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 490
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 4 cut(s) 50, 406, 415, 464
FalI AAGNNNNNCTT 2 cut(s) 474, 506
FaqI GGGAC 1 cut(s) 170
FatI CATG 4 cut(s) 46, 402, 411, 460
Fnu4HI GCNGC 5 cut(s) 117, 122, 177, 180, 444
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 5 cut(s) 117, 122, 177, 180, 444
GlaI GCGC 4 cut(s) 25, 41, 115, 120
GluI GCNGC 5 cut(s) 117, 122, 177, 180, 444
HaeII RGCGCY 2 cut(s) 43, 122
HapII CCGG 7 cut(s) 62, 95, 111, 198, 210, 466, 582
HgaI GACGC 1 cut(s) 215
HhaI GCGC 4 cut(s) 26, 42, 116, 121
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 4 cut(s) 50, 406, 415, 464
Hin6I GCGC 4 cut(s) 24, 40, 114, 119
HinP1I GCGC 4 cut(s) 24, 40, 114, 119
HindIII AAGCTT 1 cut(s) 552
HinfI GANTC 4 cut(s) 148, 233, 406, 486
HpaII CCGG 7 cut(s) 62, 95, 111, 198, 210, 466, 582
HphI GGTGA 3 cut(s) 215, 229, 256
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 4 cut(s) 86, 145, 153, 238
Hpy188III TCNNGA 3 cut(s) 371, 431, 461
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 1 cut(s) 385
HpyAV CCTTC 4 cut(s) 217, 271, 489, 543
HpyCH4III ACNGT 2 cut(s) 298, 570
HpyCH4IV ACGT 2 cut(s) 383, 393
HpyCH4V TGCA 2 cut(s) 176, 307
HpySE526I ACGT 2 cut(s) 383, 393
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 4 cut(s) 50, 406, 415, 464
HspAI GCGC 4 cut(s) 24, 40, 114, 119
KroI GCCGGC 1 cut(s) 197
KroNI GCCGGC 1 cut(s) 199
Kzo9I GATC 1 cut(s) 367
LmnI GCTCC 3 cut(s) 67, 238, 584
Lsp1109I GCAGC 4 cut(s) 108, 166, 188, 455
LweI GCATC 1 cut(s) 463
MaeII ACGT 2 cut(s) 383, 393
MaeIII GTNAC 1 cut(s) 203
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 6 cut(s) 232, 259, 262, 304, 494, 528
MhlI GDGCHC 2 cut(s) 131, 393
MluCI AATT 2 cut(s) 184, 361
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 2 cut(s) 123, 498
MnlI CCTC 6 cut(s) 94, 147, 274, 282, 319, 550
MroNI GCCGGC 1 cut(s) 197
MroXI GAANNNNTTC 1 cut(s) 227
MseI TTAA 2 cut(s) 480, 510
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 7 cut(s) 62, 95, 111, 198, 210, 466, 582
MspR9I CCNGG 3 cut(s) 62, 111, 211
MteI GCGCNGCGC 1 cut(s) 117
MvnI CGCG 2 cut(s) 26, 116
NaeI GCCGGC 1 cut(s) 199
NciI CCSGG 3 cut(s) 62, 111, 211
NdeII GATC 1 cut(s) 367
NgoMIV GCCGGC 1 cut(s) 197
NlaIII CATG 4 cut(s) 50, 406, 415, 464
NlaIV GGNNCC 2 cut(s) 158, 300
NmeAIII GCCGAG 2 cut(s) 79, 150
NmuCI GTSAC 1 cut(s) 203
PagI TCATGA 1 cut(s) 460
PaqCI CACCTGC 1 cut(s) 205
PdiI GCCGGC 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 3 cut(s) 148, 406, 486
Pfl23II CGTACG 1 cut(s) 27
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 5 cut(s) 118, 123, 178, 181, 445
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp124BI GAGCTC 1 cut(s) 131
PspLI CGTACG 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 158, 300
PspPI GGNCC 2 cut(s) 157, 189
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 4 cut(s) 14, 29, 59, 338
RsaNI GTAC 4 cut(s) 13, 28, 58, 337
SacI GAGCTC 1 cut(s) 131
SaqAI TTAA 2 cut(s) 480, 510
SatI GCNGC 5 cut(s) 117, 122, 177, 180, 444
Sau3AI GATC 1 cut(s) 367
Sau96I GGNCC 2 cut(s) 157, 189
ScaI AGTACT 1 cut(s) 338
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 3 cut(s) 62, 111, 211
SduI GDGCHC 2 cut(s) 131, 393
SfaNI GCATC 1 cut(s) 463
SinI GGWCC 2 cut(s) 157, 189
Sse9I AATT 2 cut(s) 184, 361
SsiI CCGC 2 cut(s) 116, 201
SstI GAGCTC 1 cut(s) 131
StyD4I CCNGG 3 cut(s) 60, 109, 209
StyI CCWWGG 1 cut(s) 490
TaaI ACNGT 2 cut(s) 298, 570
TaiI ACGT 2 cut(s) 386, 396
TaqI TCGA 5 cut(s) 131, 231, 366, 387, 430
TasI AATT 2 cut(s) 184, 361
TatI WGTACW 1 cut(s) 336
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 3 cut(s) 148, 406, 486
Tru1I TTAA 2 cut(s) 480, 510
Tru9I TTAA 2 cut(s) 480, 510
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 4 cut(s) 121, 176, 179, 443
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 449
TspGWI ACGGA 2 cut(s) 30, 278
Van91I CCANNNNNTGG 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 157, 189
XmnI GAANNNNTTC 1 cut(s) 227
ZrmI AGTACT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.