Rmu_sc0002539.1_g000112

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002539.1
OG0002936
Physical Location & Seq
Forward (+)
457689 .. 462155
4467 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1137 bp
atgggcacccactggagtgtgaggccggtgcaggagtggtcagggagcggttgtgtaaggggagcggaattggatcgtcatcgtcttcgtcgagatgggaagagttggcgaaacaaggttgatgggaccggaccaccgacctcaacctcaaccaccttacatcttcgtcgccgtcgggttccccaagcaaggcccggccaagatccggatcgagaaacagagcagagatggcccagaatccgccgaaaaggttctgtcaccgtcatcgactcgccgggtgactacgaccaccgatctcaacctcaaccaccttacgtcttcgtcgccgttgggttccccaagcaagactcggccaagatccggatcgagaaacagagccgagatggcccagaatctgccggaaaggtttcgtcaccatcatcaactcgccgggcgacgacttctacagcaaagttttcaccgctgtggatcggactccgagtcgtggttcccgctcaagagatggagggcagttttgctgaggagctttactcagaaagtttacagctatcaaaaatccaattgggttccacatcgaacgtcaccgatcatggtaaggttcagttgtcggatgaagatggatcttcatggtgtggttctgatgacgaagtgaatgaagcctctgacatggacaaggaatggcagaggagacgtgaccaattccatacgatgggataccgtgatggtgttatagctggaaaggaagcttcttctcaggaaggattcaataatggctttaagcaatcagtccatgttggttacaactggggtcttgtgagaggcgttacaagcacattcgcttcccttccagatggcataagggagaagttgattgaaacagaagaacaaagaactcgatttcagggattgtatgaatctgttcattccctttctacaacaggtgcccttgggttgtttaacgatgaaatcacaagtaaaaatgatagagaacaaattgaaagttcagagactagttcttttgaagttgaaactggtttggaagagcaaagattagaccgtagtggtctaggaaattactctgcaaagctccgttcacttcttttggagtctcctggaatcaaagtaaagttcccctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

378

Amino Acids

42.26

Weight (kDa)

6.74

Isoelectric Point (pI)

59.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yae1_N PF09811 238 - 275 1.1e-10 Essential protein Yae1, N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 5, 941
AccB7I CCANNNNNTGG 1 cut(s) 709
AccBSI CCGCTC 3 cut(s) 48, 65, 494
AccIII TCCGGA 2 cut(s) 205, 360
AciI CCGC 5 cut(s) 48, 65, 241, 461, 492
AclWI GGATC 7 cut(s) 81, 197, 216, 352, 371, 476, 628
AcoI YGGCCR 2 cut(s) 196, 351
AfiI CCNNNNNNNGG 5 cut(s) 189, 205, 360, 484, 709
AgsI TTSAA 5 cut(s) 766, 875, 998, 1022, 1028
AhdI GACNNNNNGTC 1 cut(s) 479
AhlI ACTAGT 1 cut(s) 1010
AjiI CACGTC 1 cut(s) 692
AjnI CCWGG 1 cut(s) 1111
AleI CACNNNNGTG 2 cut(s) 15, 463
AluBI AGCT 5 cut(s) 526, 547, 734, 746, 1087
AluI AGCT 5 cut(s) 526, 547, 734, 746, 1087
Alw26I GTCTC 3 cut(s) 682, 1001, 1113
AlwI GGATC 7 cut(s) 81, 197, 216, 352, 371, 476, 628
AlwNI CAGNNNCTG 1 cut(s) 395
Aor13HI TCCGGA 2 cut(s) 205, 360
AoxI GGCC 6 cut(s) 23, 191, 196, 230, 351, 385
Asp700I GAANNNNTTC 3 cut(s) 250, 406, 918
AspS9I GGNCC 5 cut(s) 126, 131, 192, 231, 386
AsuC2I CCSGG 3 cut(s) 195, 276, 431
AsuHPI GGTGA 5 cut(s) 250, 290, 405, 450, 574
AvaII GGWCC 2 cut(s) 126, 131
BaeGI GKGCMC 2 cut(s) 8, 946
BanI GGYRCC 2 cut(s) 5, 941
BbsI GAAGAC 2 cut(s) 77, 310
BbvCI CCTCAGC 1 cut(s) 519
BceAI ACGGC 2 cut(s) 156, 311
BciT130I CCWGG 1 cut(s) 1113
BciVI GTATCC 1 cut(s) 707
BcnI CCSGG 3 cut(s) 195, 276, 431
BcoDI GTCTC 3 cut(s) 682, 1001, 1113
BcuI ACTAGT 1 cut(s) 1010
BfaI CTAG 3 cut(s) 1011, 1067, 1135
BfmI CTRYAG 1 cut(s) 444
BfuI GTATCC 1 cut(s) 707
BglI GCCNNNNNGGC 1 cut(s) 384
Bme1390I CCNGG 4 cut(s) 195, 276, 431, 1113
Bme18I GGWCC 2 cut(s) 126, 131
BmeRI GACNNNNNGTC 1 cut(s) 479
BmgBI CACGTC 1 cut(s) 692
BmgT120I GGNCC 5 cut(s) 126, 131, 192, 231, 386
BmiI GGNNCC 7 cut(s) 7, 127, 180, 335, 489, 568, 943
BmrFI CCNGG 4 cut(s) 195, 276, 431, 1113
BmrI ACTGGG 1 cut(s) 814
BmuI ACTGGG 1 cut(s) 814
BpiI GAAGAC 2 cut(s) 77, 310
BplI GAGNNNNNCTC 2 cut(s) 515, 547
BpmI CTGGAG 1 cut(s) 34
Bpu10I CCTNAGC 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 480
BpuMI CCSGG 3 cut(s) 195, 276, 431
BsaBI GATNNNNATC 3 cut(s) 78, 207, 362
BsaJI CCNNGG 1 cut(s) 946
BsaWI WCCGGW 3 cut(s) 128, 205, 360
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 5 cut(s) 189, 205, 360, 484, 709
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 3 cut(s) 17, 809, 1036
Bse8I GATNNNNATC 3 cut(s) 78, 207, 362
BseAI TCCGGA 2 cut(s) 205, 360
BseBI CCWGG 1 cut(s) 1113
BseDI CCNNGG 1 cut(s) 946
BseGI GGATG 1 cut(s) 616
BseJI GATNNNNATC 3 cut(s) 78, 207, 362
BseLI CCNNNNNNNGG 5 cut(s) 189, 205, 360, 484, 709
BseMII CTCAG 3 cut(s) 510, 546, 767
BseNI ACTGG 3 cut(s) 17, 809, 1036
BseRI GAGGAG 2 cut(s) 536, 700
BseSI GKGCMC 2 cut(s) 8, 946
BsgI GTGCAG 1 cut(s) 50
BshFI GGCC 6 cut(s) 25, 193, 198, 232, 353, 387
BshNI GGYRCC 2 cut(s) 5, 941
BsiSI CCGG 8 cut(s) 26, 129, 195, 206, 275, 361, 399, 430
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 5 cut(s) 189, 205, 360, 484, 709
BsmAI GTCTC 3 cut(s) 682, 1001, 1113
BsmBI CGTCTC 1 cut(s) 682
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 6 cut(s) 25, 193, 198, 232, 353, 387
Bsp1286I GDGCHC 2 cut(s) 8, 946
Bsp13I TCCGGA 2 cut(s) 205, 360
Bsp143I GATC 9 cut(s) 73, 202, 208, 293, 357, 363, 468, 586, 620
BspACI CCGC 5 cut(s) 48, 65, 241, 461, 492
BspANI GGCC 6 cut(s) 25, 193, 198, 232, 353, 387
BspCNI CTCAG 3 cut(s) 511, 545, 766
BspEI TCCGGA 2 cut(s) 205, 360
BspLI GGNNCC 7 cut(s) 7, 127, 180, 335, 489, 568, 943
BspPI GGATC 7 cut(s) 81, 197, 216, 352, 371, 476, 628
BspQI GCTCTTC 1 cut(s) 1035
BspT107I GGYRCC 2 cut(s) 5, 941
BsrBI CCGCTC 3 cut(s) 48, 65, 494
BsrFI RCCGGY 1 cut(s) 25
BsrI ACTGG 3 cut(s) 17, 809, 1036
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 946
BssMI GATC 9 cut(s) 73, 202, 208, 293, 357, 363, 468, 586, 620
BssT1I CCWWGG 1 cut(s) 946
Bst2UI CCWGG 1 cut(s) 1113
Bst4CI ACNGT 3 cut(s) 262, 719, 1058
Bst6I CTCTTC 2 cut(s) 95, 1035
BstDEI CTNAG 3 cut(s) 519, 532, 753
BstF5I GGATG 1 cut(s) 616
BstKTI GATC 9 cut(s) 76, 205, 211, 296, 360, 366, 471, 589, 623
BstMAI GTCTC 3 cut(s) 682, 1001, 1113
BstMBI GATC 9 cut(s) 73, 202, 208, 293, 357, 363, 468, 586, 620
BstMWI GCNNNNNNNGC 3 cut(s) 229, 384, 828
BstNI CCWGG 1 cut(s) 1113
BstSCI CCNGG 4 cut(s) 193, 274, 429, 1111
BstSFI CTRYAG 1 cut(s) 444
BstSLI GKGCMC 2 cut(s) 8, 946
BstV2I GAAGAC 2 cut(s) 77, 310
BstX2I RGATCY 3 cut(s) 202, 357, 620
BstYI RGATCY 3 cut(s) 202, 357, 620
BsuI GTATCC 1 cut(s) 707
BsuRI GGCC 6 cut(s) 25, 193, 198, 232, 353, 387
BtrI CACGTC 1 cut(s) 692
BtsCI GGATG 1 cut(s) 616
BtsIMutI CAGTG 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 395
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 5 cut(s) 126, 131, 192, 231, 386
CviAII CATG 4 cut(s) 590, 627, 667, 791
DdeI CTNAG 3 cut(s) 519, 532, 753
DpnI GATC 9 cut(s) 75, 204, 210, 295, 359, 365, 470, 588, 622
DpnII GATC 9 cut(s) 73, 202, 208, 293, 357, 363, 468, 586, 620
DriI GACNNNNNGTC 1 cut(s) 479
EaeI YGGCCR 2 cut(s) 196, 351
Eam1104I CTCTTC 2 cut(s) 95, 1035
Eam1105I GACNNNNNGTC 1 cut(s) 479
EarI CTCTTC 2 cut(s) 95, 1035
EciI GGCGGA 1 cut(s) 230
Eco130I CCWWGG 1 cut(s) 946
Eco47I GGWCC 2 cut(s) 126, 131
EcoRII CCWGG 1 cut(s) 1111
EcoT14I CCWWGG 1 cut(s) 946
ErhI CCWWGG 1 cut(s) 946
Esp3I CGTCTC 1 cut(s) 682
FaeI CATG 4 cut(s) 593, 630, 670, 794
FaiI YATR 8 cut(s) 591, 628, 668, 705, 731, 792, 857, 912
FaqI GGGAC 1 cut(s) 139
FatI CATG 4 cut(s) 589, 626, 666, 790
FauI CCCGC 1 cut(s) 499
FokI GGATG 1 cut(s) 623
FspBI CTAG 3 cut(s) 1011, 1067, 1135
GsuI CTGGAG 1 cut(s) 34
HaeIII GGCC 6 cut(s) 25, 193, 198, 232, 353, 387
HapII CCGG 8 cut(s) 26, 129, 195, 206, 275, 361, 399, 430
Hin1II CATG 4 cut(s) 593, 630, 670, 794
HindIII AAGCTT 1 cut(s) 744
HpaII CCGG 8 cut(s) 26, 129, 195, 206, 275, 361, 399, 430
HphI GGTGA 5 cut(s) 250, 290, 405, 450, 574
Hpy166II GTNNAC 2 cut(s) 542, 1094
Hpy188I TCNGA 7 cut(s) 473, 479, 535, 610, 640, 664, 1006
Hpy188III TCNNGA 8 cut(s) 92, 206, 212, 361, 367, 497, 755, 848
Hpy8I GTNNAC 2 cut(s) 542, 1094
Hpy99I CGWCG 5 cut(s) 93, 171, 177, 326, 439
HpyAV CCTTC 2 cut(s) 752, 854
HpyCH4III ACNGT 3 cut(s) 262, 719, 1058
HpyCH4IV ACGT 3 cut(s) 315, 579, 691
HpyCH4V TGCA 2 cut(s) 31, 1082
HpyF10VI GCNNNNNNNGC 3 cut(s) 229, 384, 828
HpyF3I CTNAG 3 cut(s) 519, 532, 753
HpySE526I ACGT 3 cut(s) 315, 579, 691
Hsp92II CATG 4 cut(s) 593, 630, 670, 794
Kpn2I TCCGGA 2 cut(s) 205, 360
Kzo9I GATC 9 cut(s) 73, 202, 208, 293, 357, 363, 468, 586, 620
LguI GCTCTTC 1 cut(s) 1035
LmnI GCTCC 4 cut(s) 45, 62, 523, 1092
MaeI CTAG 3 cut(s) 1011, 1067, 1135
MaeII ACGT 3 cut(s) 315, 579, 691
MaeIII GTNAC 7 cut(s) 256, 278, 411, 580, 692, 797, 823
MalI GATC 9 cut(s) 75, 204, 210, 295, 359, 365, 470, 588, 622
MbiI CCGCTC 3 cut(s) 48, 65, 494
MboI GATC 9 cut(s) 73, 202, 208, 293, 357, 363, 468, 586, 620
MboII GAAGA 9 cut(s) 77, 112, 155, 310, 615, 626, 741, 893, 1052
MfeI CAATTG 1 cut(s) 560
MflI RGATCY 3 cut(s) 202, 357, 620
MhlI GDGCHC 2 cut(s) 8, 946
MluCI AATT 5 cut(s) 68, 560, 698, 993, 1072
MlyI GAGTC 5 cut(s) 263, 341, 468, 489, 1115
MmeI TCCRAC 1 cut(s) 588
MnlI CCTC 9 cut(s) 15, 151, 157, 312, 499, 514, 670, 678, 812
MroI TCCGGA 2 cut(s) 205, 360
MroXI GAANNNNTTC 3 cut(s) 250, 406, 918
MseI TTAA 2 cut(s) 777, 957
MslI CAYNNNNRTG 2 cut(s) 15, 463
MspA1I CMGCKG 1 cut(s) 463
MspI CCGG 8 cut(s) 26, 129, 195, 206, 275, 361, 399, 430
MspR9I CCNGG 4 cut(s) 195, 276, 431, 1113
MunI CAATTG 1 cut(s) 560
MvaI CCWGG 1 cut(s) 1113
MwoI GCNNNNNNNGC 3 cut(s) 229, 384, 828
NciI CCSGG 3 cut(s) 195, 276, 431
NdeII GATC 9 cut(s) 73, 202, 208, 293, 357, 363, 468, 586, 620
NlaIII CATG 4 cut(s) 593, 630, 670, 794
NlaIV GGNNCC 7 cut(s) 7, 127, 180, 335, 489, 568, 943
NmeAIII GCCGAG 2 cut(s) 329, 404
NmuCI GTSAC 5 cut(s) 256, 278, 411, 580, 692
OliI CACNNNNGTG 2 cut(s) 15, 463
PciSI GCTCTTC 1 cut(s) 1035
PcsI WCGNNNNNNNCGW 1 cut(s) 88
PdmI GAANNNNTTC 3 cut(s) 250, 406, 918
PfeI GAWTC 5 cut(s) 237, 392, 762, 914, 1116
PflMI CCANNNNNTGG 1 cut(s) 709
PfoI TCCNGGA 1 cut(s) 1111
PleI GAGTC 5 cut(s) 263, 341, 468, 488, 1114
PpsI GAGTC 5 cut(s) 263, 341, 468, 488, 1114
Psp6I CCWGG 1 cut(s) 1111
PspGI CCWGG 1 cut(s) 1111
PspN4I GGNNCC 7 cut(s) 7, 127, 180, 335, 489, 568, 943
PspPI GGNCC 5 cut(s) 126, 131, 192, 231, 386
PstNI CAGNNNCTG 1 cut(s) 395
PsuI RGATCY 3 cut(s) 202, 357, 620
RseI CAYNNNNRTG 2 cut(s) 15, 463
SapI GCTCTTC 1 cut(s) 1035
SaqAI TTAA 2 cut(s) 777, 957
Sau3AI GATC 9 cut(s) 73, 202, 208, 293, 357, 363, 468, 586, 620
Sau96I GGNCC 5 cut(s) 126, 131, 192, 231, 386
SchI GAGTC 5 cut(s) 263, 341, 468, 489, 1115
ScrFI CCNGG 4 cut(s) 195, 276, 431, 1113
SduI GDGCHC 2 cut(s) 8, 946
SfcI CTRYAG 1 cut(s) 444
SinI GGWCC 2 cut(s) 126, 131
SmiMI CAYNNNNRTG 2 cut(s) 15, 463
SmlI CTYRAG 1 cut(s) 495
SmoI CTYRAG 1 cut(s) 495
SpeI ACTAGT 1 cut(s) 1010
Sse9I AATT 5 cut(s) 68, 560, 698, 993, 1072
SsiI CCGC 5 cut(s) 48, 65, 241, 461, 492
SspMI CTAG 3 cut(s) 1011, 1067, 1135
StyD4I CCNGG 4 cut(s) 193, 274, 429, 1111
StyI CCWWGG 1 cut(s) 946
TaaI ACNGT 3 cut(s) 262, 719, 1058
TaiI ACGT 3 cut(s) 318, 582, 694
TaqI TCGA 6 cut(s) 91, 211, 267, 366, 575, 895
TasI AATT 5 cut(s) 68, 560, 698, 993, 1072
TfiI GAWTC 5 cut(s) 237, 392, 762, 914, 1116
Tru1I TTAA 2 cut(s) 777, 957
Tru9I TTAA 2 cut(s) 777, 957
TscAI CASTG 1 cut(s) 17
TseFI GTSAC 5 cut(s) 256, 278, 411, 580, 692
Tsp45I GTSAC 5 cut(s) 256, 278, 411, 580, 692
TspDTI ATGAA 6 cut(s) 615, 627, 669, 911, 927, 978
TspGWI ACGGA 1 cut(s) 1079
TspRI CASTG 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 709
VpaK11BI GGWCC 2 cut(s) 126, 131
XmnI GAANNNNTTC 3 cut(s) 250, 406, 918
XspI CTAG 3 cut(s) 1011, 1067, 1135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.