Rmu_sc0002675.1_g000017

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002675.1
OG0003251
Physical Location & Seq
Reverse (-)
76449 .. 87711
11263 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 4122 bp
atgtcaactccatattcctggttgcttattgaacgatatctggtattttatggtaggagtgagacaatatcattgcggtcagagcgtgacaaattcgcttcggaagcgaatattgctagagagaaacttgagagctttatgaaagaatttgagcttcagaggaacgaaacaaatggtgtattagcaaggaacattgagttctctcagttaatagttgactaccagcggaagctgcgtgaaggttctgagtccgtgcaaactgctgaggagctttctaggaagttgactatggaggtgtctcttttgaagcaagagaaggaaatgctgcaacatgctgagaagagagcttcggatgaagttcgtaatttgtcagagagggtttatagactgcaggctagtttggacactattcagagtacccagcaagttcgtgaggaggcaagagctgccgagaggagaaaacaagaagagtatacagaacaaaaagagagggagtgggctgatgctaaaagagaattgcaagaagagaaaaataatgctctcactcttgcacttgaccgcgatcagaccataaaaaatgccgtcaaacaggttgaagaaatgagaaaagatttgtctaatgcacttcatgctgctgcatctgctgagagtagagctgctgtagctgaggccagactgtctgatctggagaaaaagagttcatcctcagatatccaggttgttgagactgacggcgggagtggatctgcttctttgacaggcaatgagtataagagtatagctcaggtaaatgaggatgcattgaaacagatggaatttgcacatgaaaacttcaagattgaggctgaaaaactgaagaagtctcgagatgctgaattactctctttgagagagagggtctctgaacttgaaaatgagattatgttgaagtcccaagaagtggcttctgcagcggcagggaaggaagaagctctattctctgctttagcagaaatttcaagcctaaaggaagaaaccacagcaaaaacttctcaaactgctgccctggagattcaggtttctactttgaagcaagacttggagaaagaacatcagcgatggcgcactgctcaggctaattatgaaagacaggtcatccttcagtcagagacaatacaggagttgactaaaacatcacaagctttggctgtgcttcagcaggaagcatcagagttgcgtaaattggatgatgcactcaaaagtgaaaatgatgaactgaagtccaggtgggaagttgataaggcaatgttagaggaatctgctagtattgctgagaagaagtacaatgaaatcaatgaacagaataaaatactgcatagtcaactggaggctgtgcacattcaattggccgagagagatcgtggttcatttggaacaacttctggaagcactggagcagatacttcaggtgatgctggtttacaaactgtgataagttatcttcgacgtacaaaagagattgcagagacagagatatccttattgaaacaagaaaaactacgattgcaatcacaacttgagagtgccctcaaggcttcagaaacagcccaagcatcacttcgtgctgagcgtgcaagttcaaggtcaatgttgttctcagaggaggaactaaaatccttacaactacaggttagagaaataaacttgctccgcgaaagtaatatccaactgagagaagaaaataaacacaattttgaggaatgccagaaattgcatgaaatatcacaaaaggccagtgttgagcgtcacaacctagagaggctgttaagggatagacagattgaggtggaggcatgtaaaaaagacattgaaatgcaaaagatggagaaagatcacttggaaaagaggcttagtgagttacttgaaaggtatagaaatatagatgttgaagattatgatcgcacaaaggctgaacatcagcagatgcagaagctggagattgttttgtctttagaaaaagatcttgcaaacttcagatcggaactgactgagagggataggaggataaatgacatgttgccagcggaggcaattttaaaatcagatgtggagaagcaaagaagaattggccttcagtttaagaggaagtatgagacatgcttaaaggaaaaggaggatcttcaaagacaaaaggaggatcttcaaaggcaaaaggacgaccttcaaaggcaatgcgacgaccttcaaaggcaaagggatgaccttataaggcagttggaggaaaaacaagcgaaacgatcttctggtgatcctgctggggagcatgcccttaaagaagagaaagaccaaaaaattcagacactgcaaaaaatgatggagaggcagaaagaggcaatggagaggcagaaagaggacctacgaaatgagaaagcaaaccgcaagaagactgagaatgctttattggaatctcttaataaaattgagcaggacaaaataatcttcaagaatgagctggagaagcataagctggctgtcaggcagctttcagatgagcaggaaaagctgaagcatgcaaaagatggtcttcctgagggtacctcagttgttcaacatctttctggagccatactggatgatcgagcctctgcttacttcttggtttgtgaaaattatgaaagggtagcacattcaactttgaatgagcttggagctggtggtgttcctgcagacactccagttgcagatgcttcattagctgctacttctgctcctgctccagcagccacccttgcatcctcaatgactcctacggcagttatgccatccaaagcaacagatgaaactgaaaggaggttcacttttcccaaaagaaacgttgaacctcgtaaaacagggaggaaattggttcggccccgtcttgtaagacctgaggaaccacaaggtgatgtagagatgtcagagacggaaggggctcagactttgaataaacatgcagcttccactgacgccgaagttcagggtgttgctacttcgacacaaccactgtttcgaaaacgtcaagcttcttcatctcagtttgagtctcacgaggaatcaatgaaccaaggggaagctggtcctgatgtggcagcacctgtgtcaaagaagcccaaaggttcagaatctcctcaaaagagtgaagggcaagcacctgcttcattggaaaatcttggcaatgttccagccacagaagaagcttctaatgctgataatcctgaaggttcaaatgaggaaggtgctgttgatgctgagaaggaagagattgagaataccgcggtgaaggttgaagagccaattgaacaacaatttgatggttcaagtcaacctgaatcacaacatgacaagaatagtgttttggaagaagatgtggatggatcagatgttaaagagatggtgcccgatgagggagcaaaggataatctggtggagcctgacaaccgacagtccagtggagttgggggagacagagaagagggagagcttccacctgatgtatcagaccttgaaggtggtgatacaacgatgggcagtcctggtatagaggaaggtcagtcggagcctattacaacacccagagcttcaccatctagggttgatgatgaagatcttgctggcgcttctgttgtggatgttagtgaggtgaattctccagaagttcttaatgaagagaaaaataatgaagttgatgtacctgaagagacagctgaagcctctgataagtcaaatgatggtatcgatcaaactgcaatggagactgacctcactgttgaagctgcctctgtagctggtgatgcctctataaccgctgagagtacctctgcaagtactactacagaggctagtggttcaagacaggccagtgctagtgtcaccactgaagcagaagaggcaaagcaggtttctcctgcctctaccaccataaatataactgaacaagctaggcggaatgctgagctaagacagcgtggacagcagggacgacaaccaattgttgtacctccgaccccaactagaggtcgtggaagaccagcacagcgtggacgtgcacgtgctgtgcgtcgtcctgtccgtggacgtggccccacatctggtgatcaagtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

1373

Amino Acids

153.74

Weight (kDa)

4.99

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_MLP1_2 PF07926 331 - 458 2.1e-26 TPR/MLP1/MLP2-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2246
AarI CACCTGC 1 cut(s) 3178
Acc36I ACCTGC 2 cut(s) 3178, 3904
Acc65I GGTACC 1 cut(s) 2573
AccB1I GGYRCC 2 cut(s) 2573, 3412
AccB7I CCANNNNNTGG 1 cut(s) 940
AccI GTMKAC 1 cut(s) 473
AccII CGCG 3 cut(s) 561, 1692, 3293
AclI AACGTT 1 cut(s) 2853
AclWI GGATC 5 cut(s) 751, 2163, 2184, 2282, 3400
AcoI YGGCCR 1 cut(s) 1386
AcsI RAATTY 6 cut(s) 92, 146, 815, 993, 2331, 3661
AcvI CACGTG 1 cut(s) 4067
AcyI GRCGYC 1 cut(s) 2985
AdeI CACNNNGTG 3 cut(s) 1601, 2921, 4055
AfaI GTAC 8 cut(s) 418, 1322, 1489, 2575, 3708, 3832, 3844, 4014
AfiI CCNNNNNNNGG 5 cut(s) 940, 3422, 4031, 4088, 4106
AflIII ACRYGT 1 cut(s) 2052
AjiI CACGTC 2 cut(s) 4061, 4094
AjnI CCWGG 5 cut(s) 17, 714, 1044, 1262, 3550
Alw21I GWGCWC 2 cut(s) 1377, 4066
Alw44I GTGCAC 2 cut(s) 1373, 4062
AlwI GGATC 5 cut(s) 751, 2163, 2184, 2282, 3400
AlwNI CAGNNNCTG 3 cut(s) 1972, 2341, 3113
Ama87I CYCGRG 1 cut(s) 864
AoxI GGCC 7 cut(s) 669, 1386, 1770, 2107, 2888, 3873, 4096
ApaLI GTGCAC 2 cut(s) 1373, 4062
ApoI RAATTY 6 cut(s) 92, 146, 815, 993, 2331, 3661
Asp700I GAANNNNTTC 1 cut(s) 1417
Asp718I GGTACC 1 cut(s) 2573
AspLEI GCGC 2 cut(s) 1104, 3635
AspS9I GGNCC 4 cut(s) 2392, 2889, 3095, 4097
AsuII TTCGAA 1 cut(s) 3028
AvaI CYCGRG 1 cut(s) 864
AvaII GGWCC 2 cut(s) 2392, 3095
AxyI CCTNAGG 2 cut(s) 2568, 2907
BaeGI GKGCMC 4 cut(s) 1377, 1567, 3417, 4066
BaeI ACNNNNGTAYC 2 cut(s) 2565, 2598
BanI GGYRCC 2 cut(s) 2573, 3412
BanII GRGCYC 1 cut(s) 2953
BarI GAAGNNNNNNTAC 2 cut(s) 3690, 3722
BauI CACGAG 1 cut(s) 3065
BbrPI CACGTG 1 cut(s) 4067
BbsI GAAGAC 3 cut(s) 2429, 2555, 4048
Bbv12I GWGCWC 2 cut(s) 1377, 4066
BbvCI CCTCAGC 2 cut(s) 264, 666
BceAI ACGGC 3 cut(s) 566, 748, 2805
BcgI CGANNNNNNTGC 2 cut(s) 3743, 3777
BciT130I CCWGG 5 cut(s) 19, 716, 1046, 1264, 3552
BclI TGATCA 1 cut(s) 4111
BfmI CTRYAG 7 cut(s) 389, 660, 948, 1664, 2703, 3798, 3849
BfoI RGCGCY 1 cut(s) 3636
BfuAI ACCTGC 2 cut(s) 3178, 3904
BglI GCCNNNNNGGC 1 cut(s) 1571
BglII AGATCT 2 cut(s) 1999, 3622
BlpI GCTNAGC 2 cut(s) 1605, 3969
BmcAI AGTACT 1 cut(s) 3844
Bme1390I CCNGG 5 cut(s) 19, 716, 1046, 1264, 3552
Bme18I GGWCC 2 cut(s) 2392, 3095
BmeT110I CYCGRG 1 cut(s) 864
BmgBI CACGTC 2 cut(s) 4061, 4094
BmgT120I GGNCC 4 cut(s) 2392, 2889, 3095, 4097
BmiI GGNNCC 8 cut(s) 2575, 2602, 2891, 2913, 3414, 3447, 3576, 4099
BmrFI CCNGG 5 cut(s) 19, 716, 1046, 1264, 3552
BpiI GAAGAC 3 cut(s) 2429, 2555, 4048
BplI GAGNNNNNCTC 8 cut(s) 766, 798, 884, 916, 2561, 2593, 3818, 3850
Bpu10I CCTNAGC 4 cut(s) 264, 666, 783, 1110
Bpu1102I GCTNAGC 2 cut(s) 1605, 3969
Bpu14I TTCGAA 1 cut(s) 3028
BpuEI CTTGAG 3 cut(s) 149, 1553, 1577
Bsa29I ATCGAT 1 cut(s) 3753
BsaAI YACGTR 1 cut(s) 4067
BsaBI GATNNNNATC 3 cut(s) 1546, 1935, 3621
BsaHI GRCGYC 1 cut(s) 2985
BsaI GGTCTC 1 cut(s) 904
BsaJI CCNNGG 4 cut(s) 1044, 3082, 3291, 4087
BsaXI ACNNNNNCTCC 2 cut(s) 2731, 2761
Bsc4I CCNNNNNNNGG 5 cut(s) 940, 3422, 4031, 4088, 4106
Bse1I ACTGG 7 cut(s) 1368, 1435, 1773, 2613, 2714, 3465, 3876
Bse21I CCTNAGG 2 cut(s) 2568, 2907
Bse3DI GCAATG 7 cut(s) 71, 769, 1290, 2216, 2379, 3199, 3771
Bse8I GATNNNNATC 3 cut(s) 1546, 1935, 3621
BseBI CCWGG 5 cut(s) 19, 716, 1046, 1264, 3552
BseCI ATCGAT 1 cut(s) 3753
BseDI CCNNGG 4 cut(s) 1044, 3082, 3291, 4087
BseJI GATNNNNATC 3 cut(s) 1546, 1935, 3621
BseLI CCNNNNNNNGG 5 cut(s) 940, 3422, 4031, 4088, 4106
BseMI GCAATG 7 cut(s) 71, 769, 1290, 2216, 2379, 3199, 3771
BseNI ACTGG 7 cut(s) 1368, 1435, 1773, 2613, 2714, 3465, 3876
BseRI GAGGAG 5 cut(s) 281, 449, 469, 1655, 3135
BseSI GKGCMC 4 cut(s) 1377, 1567, 3417, 4066
BseYI CCCAGC 2 cut(s) 420, 2294
Bsh1236I CGCG 3 cut(s) 561, 1692, 3293
BshFI GGCC 7 cut(s) 671, 1388, 1772, 2109, 2890, 3875, 4098
BshNI GGYRCC 2 cut(s) 2573, 3412
BshVI ATCGAT 1 cut(s) 3753
BsiHKAI GWGCWC 2 cut(s) 1377, 4066
BsiHKCI CYCGRG 1 cut(s) 864
BslFI GGGAC 2 cut(s) 916, 4008
BslI CCNNNNNNNGG 5 cut(s) 940, 3422, 4031, 4088, 4106
BsmBI CGTCTC 1 cut(s) 2933
BsmFI GGGAC 2 cut(s) 916, 4008
BsmI GAATGC 3 cut(s) 1745, 2437, 3970
BsnI GGCC 7 cut(s) 671, 1388, 1772, 2109, 2890, 3875, 4098
Bso31I GGTCTC 1 cut(s) 904
BsoBI CYCGRG 1 cut(s) 864
Bsp119I TTCGAA 1 cut(s) 3028
Bsp1286I GDGCHC 5 cut(s) 1377, 1567, 2953, 3417, 4066
Bsp1720I GCTNAGC 2 cut(s) 1605, 3969
BspANI GGCC 7 cut(s) 671, 1388, 1772, 2109, 2890, 3875, 4098
BspDI ATCGAT 1 cut(s) 3753
BspFNI CGCG 3 cut(s) 561, 1692, 3293
BspLI GGNNCC 8 cut(s) 2575, 2602, 2891, 2913, 3414, 3447, 3576, 4099
BspMAI CTGCAG 3 cut(s) 393, 952, 2707
BspMI ACCTGC 2 cut(s) 3178, 3904
BspPI GGATC 5 cut(s) 751, 2163, 2184, 2282, 3400
BspQI GCTCTTC 1 cut(s) 3300
BspT104I TTCGAA 1 cut(s) 3028
BspT107I GGYRCC 2 cut(s) 2573, 3412
BspTNI GGTCTC 1 cut(s) 904
BsrDI GCAATG 7 cut(s) 71, 769, 1290, 2216, 2379, 3199, 3771
BsrI ACTGG 7 cut(s) 1368, 1435, 1773, 2613, 2714, 3465, 3876
BssECI CCNNGG 4 cut(s) 1044, 3082, 3291, 4087
BssNAI GTATAC 1 cut(s) 474
BssNI GRCGYC 1 cut(s) 2985
BssSI CACGAG 1 cut(s) 3065
BssT1I CCWWGG 1 cut(s) 3082
Bst1107I GTATAC 1 cut(s) 474
Bst2BI CACGAG 1 cut(s) 3065
Bst2UI CCWGG 5 cut(s) 19, 716, 1046, 1264, 3552
Bst4CI ACNGT 5 cut(s) 678, 1468, 3024, 3462, 3784
BstACI GRCGYC 1 cut(s) 2985
BstAPI GCANNNNNTGC 2 cut(s) 446, 629
BstBAI YACGTR 1 cut(s) 4067
BstBI TTCGAA 1 cut(s) 3028
BstC8I GCNNGC 8 cut(s) 393, 1611, 2061, 2304, 2508, 2550, 3165, 3631
BstDSI CCRYGG 2 cut(s) 3291, 4087
BstFNI CGCG 3 cut(s) 561, 1692, 3293
BstH2I RGCGCY 1 cut(s) 3636
BstHHI GCGC 2 cut(s) 1104, 3635
BstNI CCWGG 5 cut(s) 19, 716, 1046, 1264, 3552
BstNSI RCATGY 7 cut(s) 335, 1836, 2056, 2139, 2306, 2552, 2972
BstSCI CCNGG 5 cut(s) 17, 714, 1044, 1262, 3550
BstSFI CTRYAG 7 cut(s) 389, 660, 948, 1664, 2703, 3798, 3849
BstSLI GKGCMC 4 cut(s) 1377, 1567, 3417, 4066
BstUI CGCG 3 cut(s) 561, 1692, 3293
BstV2I GAAGAC 3 cut(s) 2429, 2555, 4048
BstX2I RGATCY 5 cut(s) 743, 1999, 2155, 2176, 3622
BstXI CCANNNNNNTGG 1 cut(s) 18
BstYI RGATCY 5 cut(s) 743, 1999, 2155, 2176, 3622
BstZ17I GTATAC 1 cut(s) 474
Bsu15I ATCGAT 1 cut(s) 3753
Bsu36I CCTNAGG 2 cut(s) 2568, 2907
BsuRI GGCC 7 cut(s) 671, 1388, 1772, 2109, 2890, 3875, 4098
BsuTUI ATCGAT 1 cut(s) 3753
BtgI CCRYGG 2 cut(s) 3291, 4087
BtgZI GCGATG 1 cut(s) 1111
BtrI CACGTC 2 cut(s) 4061, 4094
BtsI GCAGTG 2 cut(s) 1104, 2339
BveI ACCTGC 2 cut(s) 3178, 3904
Cac8I GCNNGC 8 cut(s) 393, 1611, 2061, 2304, 2508, 2550, 3165, 3631
CaiI CAGNNNCTG 3 cut(s) 1972, 2341, 3113
CfoI GCGC 2 cut(s) 1104, 3635
Cfr13I GGNCC 4 cut(s) 2392, 2889, 3095, 4097
Cfr42I CCGCGG 1 cut(s) 3294
ClaI ATCGAT 1 cut(s) 3753
CseI GACGC 3 cut(s) 1772, 2993, 4064
Csp6I GTAC 8 cut(s) 417, 1321, 1488, 2574, 3707, 3831, 3843, 4013
CviQI GTAC 8 cut(s) 417, 1321, 1488, 2574, 3707, 3831, 3843, 4013
DraI TTTAAA 1 cut(s) 2076
DraIII CACNNNGTG 3 cut(s) 1601, 2921, 4055
EaeI YGGCCR 1 cut(s) 1386
EciI GGCGGA 1 cut(s) 3976
Eco130I CCWWGG 1 cut(s) 3082
Eco24I GRGCYC 1 cut(s) 2953
Eco31I GGTCTC 1 cut(s) 904
Eco32I GATATC 3 cut(s) 38, 712, 1515
Eco47I GGWCC 2 cut(s) 2392, 3095
Eco72I CACGTG 1 cut(s) 4067
Eco81I CCTNAGG 2 cut(s) 2568, 2907
Eco88I CYCGRG 1 cut(s) 864
EcoO109I RGGNCCY 1 cut(s) 2392
EcoRI GAATTC 1 cut(s) 3661
EcoRII CCWGG 5 cut(s) 17, 714, 1044, 1262, 3550
EcoRV GATATC 3 cut(s) 38, 712, 1515
EcoT14I CCWWGG 1 cut(s) 3082
EcoT22I ATGCAT 1 cut(s) 802
EcoT38I GRGCYC 1 cut(s) 2953
ErhI CCWWGG 1 cut(s) 3082
Esp3I CGTCTC 1 cut(s) 2933
FalI AAGNNNNNCTT 6 cut(s) 1061, 1093, 1581, 1613, 2547, 2579
FaqI GGGAC 2 cut(s) 916, 4008
FauI CCCGC 1 cut(s) 728
FbaI TGATCA 1 cut(s) 4111
FblI GTMKAC 1 cut(s) 473
FriOI GRGCYC 1 cut(s) 2953
GlaI GCGC 2 cut(s) 1103, 3634
GsaI CCCAGC 2 cut(s) 424, 2298
HaeII RGCGCY 1 cut(s) 3636
HaeIII GGCC 7 cut(s) 671, 1388, 1772, 2109, 2890, 3875, 4098
HgaI GACGC 3 cut(s) 1772, 2993, 4064
HhaI GCGC 2 cut(s) 1104, 3635
Hin1I GRCGYC 1 cut(s) 2985
Hin6I GCGC 2 cut(s) 1102, 3633
HinP1I GCGC 2 cut(s) 1102, 3633
HincII GTYRAC 6 cut(s) 6, 217, 285, 1164, 1361, 3341
HindII GTYRAC 6 cut(s) 6, 217, 285, 1164, 1361, 3341
HindIII AAGCTT 3 cut(s) 1179, 3039, 3213
HinfI GANTC 9 cut(s) 248, 1051, 1295, 2444, 2782, 3059, 3071, 3140, 3347
Hpy99I CGWCG 3 cut(s) 1488, 2219, 4080
HpyCH4III ACNGT 5 cut(s) 678, 1468, 3024, 3462, 3784
HpyCH4IV ACGT 6 cut(s) 1486, 2853, 3034, 4060, 4066, 4093
HpySE526I ACGT 6 cut(s) 1486, 2853, 3034, 4060, 4066, 4093
Hsp92I GRCGYC 1 cut(s) 2985
HspAI GCGC 2 cut(s) 1102, 3633
KpnI GGTACC 1 cut(s) 2577
Ksp22I TGATCA 1 cut(s) 4111
KspI CCGCGG 1 cut(s) 3294
LguI GCTCTTC 1 cut(s) 3300
MaeII ACGT 6 cut(s) 1486, 2853, 3034, 4060, 4066, 4093
MaeIII GTNAC 4 cut(s) 86, 1784, 1896, 3886
MfeI CAATTG 3 cut(s) 1382, 3312, 4005
MflI RGATCY 5 cut(s) 743, 1999, 2155, 2176, 3622
MhlI GDGCHC 5 cut(s) 1377, 1567, 2953, 3417, 4066
MlyI GAGTC 3 cut(s) 257, 2776, 3068
MmeI TCCRAC 4 cut(s) 1729, 2235, 3552, 4043
Mph1103I ATGCAT 1 cut(s) 802
MroXI GAANNNNTTC 1 cut(s) 1417
MseI TTAA 9 cut(s) 209, 1805, 2075, 2118, 2141, 2310, 2451, 3402, 3678
MslI CAYNNNNRTG 1 cut(s) 1850
MspA1I CMGCKG 6 cut(s) 226, 953, 2063, 3293, 3722, 3824
MspR9I CCNGG 5 cut(s) 19, 716, 1046, 1264, 3552
MunI CAATTG 3 cut(s) 1382, 3312, 4005
Mva1269I GAATGC 3 cut(s) 1745, 2437, 3970
MvaI CCWGG 5 cut(s) 19, 716, 1046, 1264, 3552
MvnI CGCG 3 cut(s) 561, 1692, 3293
NlaIV GGNNCC 8 cut(s) 2575, 2602, 2891, 2913, 3414, 3447, 3576, 4099
NmeAIII GCCGAG 2 cut(s) 475, 1414
NmuCI GTSAC 3 cut(s) 86, 1784, 3886
NsiI ATGCAT 1 cut(s) 802
NspI RCATGY 7 cut(s) 335, 1836, 2056, 2139, 2306, 2552, 2972
NspV TTCGAA 1 cut(s) 3028
PaeI GCATGC 2 cut(s) 2306, 2552
PaeR7I CTCGAG 1 cut(s) 864
PaqCI CACCTGC 1 cut(s) 3178
PciI ACATGT 1 cut(s) 2052
PciSI GCTCTTC 1 cut(s) 3300
PcsI WCGNNNNNNNCGW 3 cut(s) 1606, 4072, 4084
PctI GAATGC 3 cut(s) 1745, 2437, 3970
PdmI GAANNNNTTC 1 cut(s) 1417
PfeI GAWTC 6 cut(s) 1051, 1295, 2444, 3071, 3140, 3347
PflMI CCANNNNNTGG 1 cut(s) 940
PleI GAGTC 3 cut(s) 256, 2776, 3067
PmaCI CACGTG 1 cut(s) 4067
PmlI CACGTG 1 cut(s) 4067
PpsI GAGTC 3 cut(s) 256, 2776, 3067
Ppu21I YACGTR 1 cut(s) 4067
PpuMI RGGWCCY 1 cut(s) 2392
PscI ACATGT 1 cut(s) 2052
PsiI TTATAA 1 cut(s) 2246
Psp1406I AACGTT 1 cut(s) 2853
Psp5II RGGWCCY 1 cut(s) 2392
Psp6I CCWGG 5 cut(s) 17, 714, 1044, 1262, 3550
PspCI CACGTG 1 cut(s) 4067
PspFI CCCAGC 2 cut(s) 420, 2294
PspGI CCWGG 5 cut(s) 17, 714, 1044, 1262, 3550
PspN4I GGNNCC 8 cut(s) 2575, 2602, 2891, 2913, 3414, 3447, 3576, 4099
PspPI GGNCC 4 cut(s) 2392, 2889, 3095, 4097
PspPPI RGGWCCY 1 cut(s) 2392
PstI CTGCAG 3 cut(s) 393, 952, 2707
PstNI CAGNNNCTG 3 cut(s) 1972, 2341, 3113
PsuI RGATCY 5 cut(s) 743, 1999, 2155, 2176, 3622
PvuII CAGCTG 1 cut(s) 3722
RsaI GTAC 8 cut(s) 418, 1322, 1489, 2575, 3708, 3832, 3844, 4014
RsaNI GTAC 8 cut(s) 417, 1321, 1488, 2574, 3707, 3831, 3843, 4013
RseI CAYNNNNRTG 1 cut(s) 1850
SacII CCGCGG 1 cut(s) 3294
SapI GCTCTTC 1 cut(s) 3300
SaqAI TTAA 9 cut(s) 209, 1805, 2075, 2118, 2141, 2310, 2451, 3402, 3678
Sau96I GGNCC 4 cut(s) 2392, 2889, 3095, 4097
ScaI AGTACT 1 cut(s) 3844
SchI GAGTC 3 cut(s) 257, 2776, 3068
ScrFI CCNGG 5 cut(s) 19, 716, 1046, 1264, 3552
SduI GDGCHC 5 cut(s) 1377, 1567, 2953, 3417, 4066
SfcI CTRYAG 7 cut(s) 389, 660, 948, 1664, 2703, 3798, 3849
Sfr274I CTCGAG 1 cut(s) 864
Sfr303I CCGCGG 1 cut(s) 3294
SfuI TTCGAA 1 cut(s) 3028
SgrBI CCGCGG 1 cut(s) 3294
SinI GGWCC 2 cut(s) 2392, 3095
SlaI CTCGAG 1 cut(s) 864
SmiMI CAYNNNNRTG 1 cut(s) 1850
SmlI CTYRAG 4 cut(s) 128, 864, 1556, 1568
SmoI CTYRAG 4 cut(s) 128, 864, 1556, 1568
SphI GCATGC 2 cut(s) 2306, 2552
SspI AATATT 1 cut(s) 112
StyD4I CCNGG 5 cut(s) 17, 714, 1044, 1262, 3550
StyI CCWWGG 1 cut(s) 3082
TaaI ACNGT 5 cut(s) 678, 1468, 3024, 3462, 3784
TaiI ACGT 6 cut(s) 1489, 2856, 3037, 4063, 4069, 4096
TaqI TCGA 6 cut(s) 865, 1483, 2617, 3011, 3028, 3753
TatI WGTACW 2 cut(s) 1320, 3842
TauI GCSGC 1 cut(s) 956
TfiI GAWTC 6 cut(s) 1051, 1295, 2444, 3071, 3140, 3347
Tru1I TTAA 9 cut(s) 209, 1805, 2075, 2118, 2141, 2310, 2451, 3402, 3678
Tru9I TTAA 9 cut(s) 209, 1805, 2075, 2118, 2141, 2310, 2451, 3402, 3678
TseFI GTSAC 3 cut(s) 86, 1784, 3886
Tsp45I GTSAC 3 cut(s) 86, 1784, 3886
TspGWI ACGGA 3 cut(s) 241, 2957, 4076
Van91I CCANNNNNTGG 1 cut(s) 940
VneI GTGCAC 2 cut(s) 1373, 4062
VpaK11BI GGWCC 2 cut(s) 2392, 3095
XapI RAATTY 6 cut(s) 92, 146, 815, 993, 2331, 3661
XceI RCATGY 7 cut(s) 335, 1836, 2056, 2139, 2306, 2552, 2972
XcmI CCANNNNNNNNNTGG 1 cut(s) 3089
XhoI CTCGAG 1 cut(s) 864
XmiI GTMKAC 1 cut(s) 473
XmnI GAANNNNTTC 1 cut(s) 1417
ZrmI AGTACT 1 cut(s) 3844
Zsp2I ATGCAT 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.