Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002736.1

Orthogroup ID

OG0004293

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 486

Gene Structure 486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 401 bp

attggaattgggtgcagattttggagaagaaacctactgttgttgagaactacggtatttggttgaggtatcaaagcaggacagggtatcacaacatgtacaaggagtaccgtgacactagtctgaatggggctgtggatcagatgtgcactgagatggcttctcgccacagggtcaggtttccttgcatccaaatcatcaagactgccacgatcccagctaagctttgcaagagggaaagtaccaagcaattccacaattccaagatcaagtttccattgaactctgatgatgcatttatgtcagattatgttcgaatcctcattttagtacttccctttcctggggtttggtgttttggccatactacatgggctgctgacaacttccaggaccagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18A

Protein Analysis

132

Amino Acids

15.6

Weight (kDa)

9.12

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18A	PF01775	26 - 68	1.2e-16	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G32670
fragaria_vesca	FvH4_3g05760
malus_domestica	MD09G1149400.v1.1 MD17G1135800.v1.1
pyrus_communis	pycom09g06870 pycom17g12950
rosa_chinensis	RchiOBHm_Chr1g0331531 RchiOBHm_Chr1g0354441 RchiOBHm_Chr4g0408671 RchiOBHm_Chr5g0013781 RchiOBHm_Chr5g0040271 RchiOBHm_Chr5g0077631 RchiOBHm_Chr6g0245431
rosa_laevigata	RLG00000027688 RLG00000032046
rosa_multiflora	Rmu_co8334583.1_g000001 Rmu_sc0002736.1_g000001 Rmu_sc0004645.1_g000004 Rmu_ssc0000256.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062860 Rroxscaffold_4G00303150 Rroxscaffold_7G00189450
rosa_rugosa	Rorug02G0509500 Rorug04G0140600 Rorug04G0140600 Rorug05G0012800
rosa_samantha	Rh4CG158800 Rh4CG275900 Rh5CG115100 Rh5DG101900 Rh6CG232200
rosa_wichuraiana	Rw7G030000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	146, 207
AcoI	YGGCCR	1 cut(s)	360
AfaI	GTAC	4 cut(s)	100, 109, 243, 332
AfiI	CCNNNNNNNGG	2 cut(s)	343, 344
AflIII	ACRYGT	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	282
AhlI	ACTAGT	1 cut(s)	118
AjnI	CCWGG	2 cut(s)	342, 389
AluBI	AGCT	2 cut(s)	220, 225
AluI	AGCT	2 cut(s)	220, 225
Alw21I	GWGCWC	1 cut(s)	151
Alw44I	GTGCAC	1 cut(s)	147
AlwI	GGATC	2 cut(s)	146, 207
AoxI	GGCC	1 cut(s)	360
ApaLI	GTGCAC	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	376
AspS9I	GGNCC	1 cut(s)	393
AsuII	TTCGAA	1 cut(s)	315
AvaII	GGWCC	1 cut(s)	393
BaeGI	GKGCMC	1 cut(s)	151
BalI	TGGCCA	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	363
BccI	CCATC	1 cut(s)	150
BciT130I	CCWGG	2 cut(s)	344, 391
BcuI	ACTAGT	1 cut(s)	118
BfaI	CTAG	1 cut(s)	119
BisI	GCNGC	1 cut(s)	377
BlpI	GCTNAGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	378
BmcAI	AGTACT	1 cut(s)	332
Bme1390I	CCNGG	2 cut(s)	344, 391
Bme18I	GGWCC	1 cut(s)	393
BmgT120I	GGNCC	1 cut(s)	393
BmrFI	CCNGG	2 cut(s)	344, 391
BmsI	GCATC	2 cut(s)	197, 282
BoxI	GACNNNNGTC	1 cut(s)	119
Bpu1102I	GCTNAGC	1 cut(s)	221
Bpu14I	TTCGAA	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 344
Bse1I	ACTGG	1 cut(s)	396
BseBI	CCWGG	2 cut(s)	344, 391
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	1 cut(s)	188
BseLI	CCNNNNNNNGG	2 cut(s)	343, 344
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	396
BseSI	GKGCMC	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	363
BseYI	CCCAGC	1 cut(s)	216
BsgI	GTGCAG	1 cut(s)	34
BshFI	GGCC	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	151
BslI	CCNNNNNNNGG	2 cut(s)	343, 344
BsnI	GGCC	1 cut(s)	362
Bsp119I	TTCGAA	1 cut(s)	315
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp1407I	TGTACA	1 cut(s)	98
Bsp143I	GATC	3 cut(s)	138, 212, 266
Bsp1720I	GCTNAGC	1 cut(s)	221
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	144
BspPI	GGATC	2 cut(s)	146, 207
BspT104I	TTCGAA	1 cut(s)	315
BsrGI	TGTACA	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	396
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	3 cut(s)	138, 212, 266
Bst2UI	CCWGG	2 cut(s)	344, 391
Bst4CI	ACNGT	3 cut(s)	39, 55, 112
BstAUI	TGTACA	1 cut(s)	98
BstBI	TTCGAA	1 cut(s)	315
BstDEI	CTNAG	2 cut(s)	152, 221
BstF5I	GGATG	1 cut(s)	188
BstKTI	GATC	3 cut(s)	141, 215, 269
BstMBI	GATC	3 cut(s)	138, 212, 266
BstNI	CCWGG	2 cut(s)	344, 391
BstNSI	RCATGY	1 cut(s)	99
BstPAI	GACNNNNGTC	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	342, 389
BstSLI	GKGCMC	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	363
BsuRI	GGCC	1 cut(s)	362
BtsCI	GGATG	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	393
Csp6I	GTAC	4 cut(s)	99, 108, 242, 331
CviAII	CATG	2 cut(s)	96, 371
CviJI	RGCY	6 cut(s)	133, 160, 220, 225, 362, 376
CviKI_1	RGCY	6 cut(s)	133, 160, 220, 225, 362, 376
CviQI	GTAC	4 cut(s)	99, 108, 242, 331
DdeI	CTNAG	2 cut(s)	152, 221
DpnI	GATC	3 cut(s)	140, 214, 268
DpnII	GATC	3 cut(s)	138, 212, 266
EaeI	YGGCCR	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	393
EcoRII	CCWGG	2 cut(s)	342, 389
EcoT22I	ATGCAT	1 cut(s)	297
FaeI	CATG	2 cut(s)	99, 374
FaiI	YATR	5 cut(s)	97, 301, 311, 365, 372
FatI	CATG	2 cut(s)	95, 370
Fnu4HI	GCNGC	1 cut(s)	377
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	377
FspBI	CTAG	1 cut(s)	119
GluI	GCNGC	1 cut(s)	377
GsaI	CCCAGC	1 cut(s)	220
HaeIII	GGCC	1 cut(s)	362
Hin1II	CATG	2 cut(s)	99, 374
HindIII	AAGCTT	1 cut(s)	223
HinfI	GANTC	1 cut(s)	317
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	4 cut(s)	125, 143, 288, 306
Hpy188III	TCNNGA	1 cut(s)	201
Hpy8I	GTNNAC	1 cut(s)	149
HpyCH4III	ACNGT	3 cut(s)	39, 55, 112
HpyCH4V	TGCA	5 cut(s)	15, 149, 188, 230, 295
HpyF3I	CTNAG	2 cut(s)	152, 221
Hsp92II	CATG	2 cut(s)	99, 374
Kzo9I	GATC	3 cut(s)	138, 212, 266
LpnPI	CCDG	8 cut(s)	63, 68, 156, 162, 230, 329, 356, 376
Lsp1109I	GCAGC	1 cut(s)	363
LweI	GCATC	2 cut(s)	197, 282
MaeI	CTAG	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	3 cut(s)	140, 214, 268
MboI	GATC	3 cut(s)	138, 212, 266
MboII	GAAGA	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	151
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	3 cut(s)	6, 250, 258
MluNI	TGGCCA	1 cut(s)	362
MnlI	CCTC	3 cut(s)	59, 227, 331
Mox20I	TGGCCA	1 cut(s)	362
Mph1103I	ATGCAT	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	362
MslI	CAYNNNNRTG	1 cut(s)	154
Msp20I	TGGCCA	1 cut(s)	362
MspR9I	CCNGG	2 cut(s)	344, 391
MvaI	CCWGG	2 cut(s)	344, 391
NdeII	GATC	3 cut(s)	138, 212, 266
NlaIII	CATG	2 cut(s)	99, 374
NmuCI	GTSAC	1 cut(s)	112
NsiI	ATGCAT	1 cut(s)	297
NspI	RCATGY	1 cut(s)	99
NspV	TTCGAA	1 cut(s)	315
PciI	ACATGT	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	317
PfoI	TCCNGGA	1 cut(s)	389
PkrI	GCNGC	1 cut(s)	378
PscI	ACATGT	1 cut(s)	95
PshAI	GACNNNNGTC	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	342, 389
PspFI	CCCAGC	1 cut(s)	216
PspGI	CCWGG	2 cut(s)	342, 389
PspPI	GGNCC	1 cut(s)	393
RsaI	GTAC	4 cut(s)	100, 109, 243, 332
RsaNI	GTAC	4 cut(s)	99, 108, 242, 331
RseI	CAYNNNNRTG	1 cut(s)	154
SatI	GCNGC	1 cut(s)	377
Sau3AI	GATC	3 cut(s)	138, 212, 266
Sau96I	GGNCC	1 cut(s)	393
ScaI	AGTACT	1 cut(s)	332
ScrFI	CCNGG	2 cut(s)	344, 391
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	5 cut(s)	36, 70, 181, 222, 227
SfaNI	GCATC	2 cut(s)	197, 282
SfuI	TTCGAA	1 cut(s)	315
SinI	GGWCC	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	154
SpeI	ACTAGT	1 cut(s)	118
Sse9I	AATT	3 cut(s)	6, 250, 258
SspMI	CTAG	1 cut(s)	119
StyD4I	CCNGG	2 cut(s)	342, 389
TaaI	ACNGT	3 cut(s)	39, 55, 112
TaqI	TCGA	1 cut(s)	315
TasI	AATT	3 cut(s)	6, 250, 258
TatI	WGTACW	2 cut(s)	98, 330
TfiI	GAWTC	1 cut(s)	317
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	112
TspRI	CASTG	1 cut(s)	156
VneI	GTGCAC	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	393
XceI	RCATGY	1 cut(s)	99
XspI	CTAG	1 cut(s)	119
ZrmI	AGTACT	1 cut(s)	332
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.