Rmu_sc0002745.1_g000009

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002745.1
OG0003959
Physical Location & Seq
Forward (+)
43245 .. 43847
603 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 603 bp
atgaccaaggtgtacggaacaggcgcgtacgatttcaagcgccaccatgttgcagagtacccggtggagctgaaccagcagctcggagacaagccggtggtggaggctaaaccctgtgcggcgctgccgagctcgataacgctgtcggagattcagagggaccagctcactatgattgccgctgcaaattggtccaaagccggcggcgacgccgcgcaggtgaagaaggcgttcgacgcggagctggtgaagaagatttacgagacggagttgtgtgtgaaggaggggcagaggaagacggtgccattgcagagagtgatgattttggaggtcagccagtacttggagaactatctctttcccaatttcgatcccgaaatggcgacgttcgagcacgttatgtccatgattctcatggtcaatgagaaggtaatgccttttggaattgcagtatttactttgggtcacattagggagacgttcgagcacgatatgtccatgattctcatggtcaatgagaaggtattgccttttggaattgtactatttactttgggtcacattagggtcagaaaactaatccatgtagtttttatgcattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

200

Amino Acids

22.76

Weight (kDa)

6.45

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aquarius_N_1st PF16399 56 - 144 2.3e-21 Intron-binding protein aquarius N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 208
Acc36I ACCTGC 1 cut(s) 208
AccB1I GGYRCC 1 cut(s) 301
AccB7I CCANNNNNTGG 1 cut(s) 343
AccII CGCG 3 cut(s) 26, 215, 239
AciI CCGC 5 cut(s) 119, 180, 204, 213, 239
AclWI GGATC 1 cut(s) 365
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 5 cut(s) 14, 29, 59, 341, 543
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 5 cut(s) 70, 82, 132, 166, 244
AluI AGCT 5 cut(s) 70, 82, 132, 166, 244
Alw21I GWGCWC 3 cut(s) 134, 396, 489
Alw26I GTCTC 3 cut(s) 81, 257, 470
AlwI GGATC 1 cut(s) 365
ApeKI GCWGC 3 cut(s) 79, 124, 182
Asp700I GAANNNNTTC 1 cut(s) 230
AspLEI GCGC 4 cut(s) 26, 42, 124, 217
AspS9I GGNCC 2 cut(s) 160, 192
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 232, 259
AvaII GGWCC 2 cut(s) 160, 192
BanI GGYRCC 1 cut(s) 301
BanII GRGCYC 1 cut(s) 134
BarI GAAGNNNNNNTAC 2 cut(s) 242, 274
BbsI GAAGAC 1 cut(s) 302
Bbv12I GWGCWC 3 cut(s) 134, 396, 489
BbvI GCAGC 3 cut(s) 91, 111, 169
BcnI CCSGG 1 cut(s) 62
BcoDI GTCTC 3 cut(s) 81, 257, 470
BfoI RGCGCY 2 cut(s) 43, 125
BfuAI ACCTGC 1 cut(s) 208
BisI GCNGC 7 cut(s) 80, 120, 125, 180, 183, 205, 213
BlsI GCNGC 7 cut(s) 81, 121, 126, 181, 184, 206, 214
BmcAI AGTACT 1 cut(s) 341
Bme1390I CCNGG 1 cut(s) 62
Bme18I GGWCC 2 cut(s) 160, 192
BmgT120I GGNCC 2 cut(s) 160, 192
BmiI GGNNCC 2 cut(s) 161, 303
BmrFI CCNGG 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 62
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse118I RCCGGY 2 cut(s) 94, 200
Bse1I ACTGG 1 cut(s) 337
Bse3DI GCAATG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 6
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMI GCAATG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 337
BseXI GCAGC 3 cut(s) 91, 111, 169
Bsh1236I CGCG 3 cut(s) 26, 215, 239
BshNI GGYRCC 1 cut(s) 301
BsiHKAI GWGCWC 3 cut(s) 134, 396, 489
BsiSI CCGG 3 cut(s) 62, 95, 201
BsiWI CGTACG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 3 cut(s) 81, 257, 470
BsmBI CGTCTC 2 cut(s) 257, 470
BsmFI GGGAC 1 cut(s) 173
Bsp1286I GDGCHC 3 cut(s) 134, 396, 489
Bsp143I GATC 1 cut(s) 370
BspACI CCGC 5 cut(s) 119, 180, 204, 213, 239
BspFNI CGCG 3 cut(s) 26, 215, 239
BspLI GGNNCC 2 cut(s) 161, 303
BspMI ACCTGC 1 cut(s) 208
BspPI GGATC 1 cut(s) 365
BspT107I GGYRCC 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 305
BsrFI RCCGGY 2 cut(s) 94, 200
BsrI ACTGG 1 cut(s) 337
BssAI RCCGGY 2 cut(s) 94, 200
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 1 cut(s) 370
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 301
BstACI GRCGYC 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 202
BstFNI CGCG 3 cut(s) 26, 215, 239
BstH2I RGCGCY 2 cut(s) 43, 125
BstHHI GCGC 4 cut(s) 26, 42, 124, 217
BstKTI GATC 1 cut(s) 373
BstMAI GTCTC 3 cut(s) 81, 257, 470
BstMBI GATC 1 cut(s) 370
BstMWI GCNNNNNNNGC 2 cut(s) 76, 236
BstSCI CCNGG 1 cut(s) 60
BstUI CGCG 3 cut(s) 26, 215, 239
BstV1I GCAGC 3 cut(s) 91, 111, 169
BstV2I GAAGAC 1 cut(s) 302
BveI ACCTGC 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 202
CfoI GCGC 4 cut(s) 26, 42, 124, 217
Cfr10I RCCGGY 2 cut(s) 94, 200
Cfr13I GGNCC 2 cut(s) 160, 192
CseI GACGC 2 cut(s) 218, 245
Csp6I GTAC 5 cut(s) 13, 28, 58, 340, 542
CviAII CATG 6 cut(s) 47, 406, 415, 499, 508, 584
CviJI RGCY 9 cut(s) 70, 82, 94, 107, 132, 166, 200, 244, 336
CviKI_1 RGCY 9 cut(s) 70, 82, 94, 107, 132, 166, 200, 244, 336
CviQI GTAC 5 cut(s) 13, 28, 58, 340, 542
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
Ecl136II GAGCTC 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 134
Eco47I GGWCC 2 cut(s) 160, 192
Eco53kI GAGCTC 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 6
EcoT22I ATGCAT 1 cut(s) 600
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 6
Esp3I CGTCTC 2 cut(s) 257, 470
FaeI CATG 6 cut(s) 50, 409, 418, 502, 511, 587
FaqI GGGAC 1 cut(s) 173
FatI CATG 6 cut(s) 46, 405, 414, 498, 507, 583
Fnu4HI GCNGC 7 cut(s) 80, 120, 125, 180, 183, 205, 213
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 7 cut(s) 80, 120, 125, 180, 183, 205, 213
GlaI GCGC 4 cut(s) 25, 41, 123, 216
GluI GCNGC 7 cut(s) 80, 120, 125, 180, 183, 205, 213
HaeII RGCGCY 2 cut(s) 43, 125
HapII CCGG 3 cut(s) 62, 95, 201
HgaI GACGC 2 cut(s) 218, 245
HhaI GCGC 4 cut(s) 26, 42, 124, 217
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 6 cut(s) 50, 409, 418, 502, 511, 587
Hin6I GCGC 4 cut(s) 24, 40, 122, 215
HinP1I GCGC 4 cut(s) 24, 40, 122, 215
HinfI GANTC 3 cut(s) 151, 409, 502
HpaII CCGG 3 cut(s) 62, 95, 201
HphI GGTGA 2 cut(s) 232, 259
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 4 cut(s) 86, 148, 156, 572
Hpy188III TCNNGA 1 cut(s) 374
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 3 cut(s) 212, 239, 388
HpyAV CCTTC 4 cut(s) 220, 274, 421, 514
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 3 cut(s) 386, 396, 479
HpyCH4V TGCA 5 cut(s) 53, 185, 310, 449, 598
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 236
HpySE526I ACGT 3 cut(s) 386, 396, 479
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 6 cut(s) 50, 409, 418, 502, 511, 587
HspAI GCGC 4 cut(s) 24, 40, 122, 215
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 1 cut(s) 370
LmnI GCTCC 2 cut(s) 67, 241
Lsp1109I GCAGC 3 cut(s) 91, 111, 169
MaeII ACGT 3 cut(s) 386, 396, 479
MaeIII GTNAC 2 cut(s) 464, 557
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MboII GAAGA 4 cut(s) 235, 262, 265, 307
MhlI GDGCHC 3 cut(s) 134, 396, 489
MluCI AATT 4 cut(s) 187, 364, 444, 537
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 5 cut(s) 97, 150, 277, 285, 322
Mph1103I ATGCAT 1 cut(s) 600
MroNI GCCGGC 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 230
MseI TTAA 1 cut(s) 601
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 3 cut(s) 62, 95, 201
MspR9I CCNGG 1 cut(s) 62
MvnI CGCG 3 cut(s) 26, 215, 239
MwoI GCNNNNNNNGC 2 cut(s) 76, 236
NaeI GCCGGC 1 cut(s) 202
NciI CCSGG 1 cut(s) 62
NdeII GATC 1 cut(s) 370
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 6 cut(s) 50, 409, 418, 502, 511, 587
NlaIV GGNNCC 2 cut(s) 161, 303
NmeAIII GCCGAG 1 cut(s) 153
NmuCI GTSAC 2 cut(s) 464, 557
NsiI ATGCAT 1 cut(s) 600
PaqCI CACCTGC 1 cut(s) 208
PdiI GCCGGC 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 3 cut(s) 151, 409, 502
Pfl23II CGTACG 1 cut(s) 27
PflMI CCANNNNNTGG 1 cut(s) 343
PkrI GCNGC 7 cut(s) 81, 121, 126, 181, 184, 206, 214
Psp124BI GAGCTC 1 cut(s) 134
PspLI CGTACG 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 161, 303
PspPI GGNCC 2 cut(s) 160, 192
RsaI GTAC 5 cut(s) 14, 29, 59, 341, 543
RsaNI GTAC 5 cut(s) 13, 28, 58, 340, 542
SacI GAGCTC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 601
SatI GCNGC 7 cut(s) 80, 120, 125, 180, 183, 205, 213
Sau3AI GATC 1 cut(s) 370
Sau96I GGNCC 2 cut(s) 160, 192
ScaI AGTACT 1 cut(s) 341
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 3 cut(s) 134, 396, 489
SinI GGWCC 2 cut(s) 160, 192
Sse9I AATT 4 cut(s) 187, 364, 444, 537
SsiI CCGC 5 cut(s) 119, 180, 204, 213, 239
SstI GAGCTC 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 3 cut(s) 389, 399, 482
TaqI TCGA 5 cut(s) 134, 234, 369, 390, 483
TasI AATT 4 cut(s) 187, 364, 444, 537
TatI WGTACW 2 cut(s) 339, 541
TauI GCSGC 4 cut(s) 122, 182, 207, 215
TfiI GAWTC 3 cut(s) 151, 409, 502
Tru1I TTAA 1 cut(s) 601
Tru9I TTAA 1 cut(s) 601
TseFI GTSAC 2 cut(s) 464, 557
TseI GCWGC 3 cut(s) 79, 124, 182
Tsp45I GTSAC 2 cut(s) 464, 557
TspGWI ACGGA 2 cut(s) 30, 281
Van91I CCANNNNNTGG 1 cut(s) 343
VpaK11BI GGWCC 2 cut(s) 160, 192
XcmI CCANNNNNNNNNTGG 2 cut(s) 412, 505
XmnI GAANNNNTTC 1 cut(s) 230
ZrmI AGTACT 1 cut(s) 341
Zsp2I ATGCAT 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.