Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002809.1

Orthogroup ID

OG0003170

Physical Location & Seq

Genomic Coordinates Reverse (-)

99943 .. 102946

Gene Structure 3004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgctgaatactggaggggaggaaagattgagatgttgtgagaataccattttatgtgggcagccagagtctggaattgatgtgcgtctttgtgatgttggtgctgcaatccaagaagtcatggaatcatatgaggttgaaataaatgggaaggtgtatcaagttaaaagtatccggaacttgaatggacatagcattggaccttaccaaatccatgctggaaaatcagttcccattgtgaaaggaggggagcagacaaaaatggaagagggtgaattttttgcgattgaaactttcgcatcaactgggaaaggatatgtcagagaagatctagagtgcagccattacatgaaaaattttgatgccggccacatcccactgaggctgcctagggcaaagcaattgctagcaacaattaacaagaacttctccacattggcgttctgcaggcgatatttagaccgcctgggggagaccaagtatcttatggcgcttaagaatttgtgtgatgctggcattgtccagccctatcctcctctctgtgatgttaaagggagctatgtatctcagtttgagcatacaattttactccgcccaacctgcaaagaggtcatatcaagaggcgatgattactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

211

Amino Acids

23.63

Weight (kDa)

6.23

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	27 - 105	3e-07	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44180 AT2G44180 AT3G59990 AT3G59990 AT3G59990 AT3G59990
fragaria_vesca	FvH4_5g31110 FvH4_5g31110 FvH4_5g31120
malus_domestica	MD17G1285400.v1.1
prunus_persica	Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1
pyrus_communis	pycom17g28120
rosa_chinensis	RchiOBHm_Chr1g0328111 RchiOBHm_Chr1g0328121 RchiOBHm_Chr1g0328131
rosa_laevigata	RLG00000029939
rosa_multiflora	Rmu_sc0000408.1_g000001 Rmu_sc0002809.1_g000034 Rmu_sc0004646.1_g000013 Rmu_sc0009961.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060180 Rroxscaffold_4G00321810
rosa_rugosa	Rorug01G0073700 Rorug01G0073800.1 Rorug01G0073900
rosa_samantha	Rh1AG090800 Rh1BG072600 Rh1BG073300 Rh1BG073500 Rh1CG087200 Rh1DG094100 Rh1DG094600
rosa_wichuraiana	Rw1G007030 Rw1G007040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	608
AccB7I	CCANNNNNTGG	1 cut(s)	71
AccIII	TCCGGA	1 cut(s)	174
AciI	CCGC	2 cut(s)	463, 592
AcoI	YGGCCR	1 cut(s)	367
AcsI	RAATTY	3 cut(s)	275, 355, 499
AfiI	CCNNNNNNNGG	2 cut(s)	71, 469
AflII	CTTAAG	1 cut(s)	494
AgsI	TTSAA	3 cut(s)	140, 184, 290
AjnI	CCWGG	1 cut(s)	465
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
AluBI	AGCT	1 cut(s)	558
AluI	AGCT	1 cut(s)	558
Alw26I	GTCTC	1 cut(s)	467
AlwNI	CAGNNNCTG	1 cut(s)	71
Aor13HI	TCCGGA	1 cut(s)	174
AoxI	GGCC	1 cut(s)	367
ApeKI	GCWGC	4 cut(s)	61, 104, 339, 385
ApoI	RAATTY	3 cut(s)	275, 355, 499
AspA2I	CCTAGG	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	493
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	284
AsuNHI	GCTAGC	1 cut(s)	406
AvaII	GGWCC	1 cut(s)	200
AvrII	CCTAGG	1 cut(s)	389
BbvI	GCAGC	4 cut(s)	73, 91, 351, 372
BciT130I	CCWGG	1 cut(s)	467
BciVI	GTATCC	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	467
BfaI	CTAG	3 cut(s)	332, 390, 407
BfmI	CTRYAG	1 cut(s)	445
BfoI	RGCGCY	1 cut(s)	494
BfrI	CTTAAG	1 cut(s)	494
BfuAI	ACCTGC	1 cut(s)	608
BfuI	GTATCC	1 cut(s)	182
BglII	AGATCT	1 cut(s)	328
BisI	GCNGC	4 cut(s)	62, 105, 340, 386
BlnI	CCTAGG	1 cut(s)	389
BlsI	GCNGC	4 cut(s)	63, 106, 341, 387
Bme1390I	CCNGG	1 cut(s)	467
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	467
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	3 cut(s)	308, 352, 499
BmtI	GCTAGC	1 cut(s)	410
BmuI	ACTGGG	1 cut(s)	315
BpmI	CTGGAG	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	2 cut(s)	389, 466
BsaWI	WCCGGW	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 469
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	2 cut(s)	16, 310
BseAI	TCCGGA	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	2 cut(s)	389, 466
BseGI	GGATG	1 cut(s)	372
BseLI	CCNNNNNNNGG	2 cut(s)	71, 469
BseMII	CTCAG	2 cut(s)	371, 581
BseNI	ACTGG	2 cut(s)	16, 310
BseRI	GAGGAG	1 cut(s)	525
BseXI	GCAGC	4 cut(s)	73, 91, 351, 372
BsgI	GTGCAG	1 cut(s)	358
BshFI	GGCC	1 cut(s)	369
BsiSI	CCGG	2 cut(s)	175, 366
BslI	CCNNNNNNNGG	2 cut(s)	71, 469
BsmAI	GTCTC	1 cut(s)	467
BsnI	GGCC	1 cut(s)	369
Bso31I	GGTCTC	1 cut(s)	467
Bsp13I	TCCGGA	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	2 cut(s)	463, 592
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	2 cut(s)	372, 580
BspEI	TCCGGA	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	449
BspMI	ACCTGC	1 cut(s)	608
BspOI	GCTAGC	1 cut(s)	410
BspTI	CTTAAG	1 cut(s)	494
BspTNI	GGTCTC	1 cut(s)	467
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	16, 310
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	389, 466
BssMI	GATC	1 cut(s)	328
BssT1I	CCWWGG	1 cut(s)	389
Bst2UI	CCWGG	1 cut(s)	467
Bst6I	CTCTTC	1 cut(s)	261
BstAFI	CTTAAG	1 cut(s)	494
BstC8I	GCNNGC	4 cut(s)	367, 408, 449, 514
BstDEI	CTNAG	2 cut(s)	380, 567
BstF5I	GGATG	1 cut(s)	372
BstH2I	RGCGCY	1 cut(s)	494
BstHHI	GCGC	1 cut(s)	493
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	1 cut(s)	600
BstNI	CCWGG	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	465
BstSFI	CTRYAG	1 cut(s)	445
BstV1I	GCAGC	4 cut(s)	73, 91, 351, 372
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BsuI	GTATCC	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	372
BtsIMutI	CAGTG	1 cut(s)	377
BveI	ACCTGC	1 cut(s)	608
Cac8I	GCNNGC	4 cut(s)	367, 408, 449, 514
CaiI	CAGNNNCTG	1 cut(s)	71
CfoI	GCGC	1 cut(s)	493
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	200
CseI	GACGC	1 cut(s)	74
CviAII	CATG	3 cut(s)	121, 215, 349
CviJI	RGCY	6 cut(s)	64, 342, 369, 385, 526, 558
CviKI_1	RGCY	6 cut(s)	64, 342, 369, 385, 526, 558
DdeI	CTNAG	2 cut(s)	380, 567
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
EciI	GGCGGA	1 cut(s)	581
Eco130I	CCWWGG	1 cut(s)	389
Eco31I	GGTCTC	1 cut(s)	467
Eco47I	GGWCC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	389
ErhI	CCWWGG	1 cut(s)	389
FaeI	CATG	3 cut(s)	124, 218, 352
FatI	CATG	3 cut(s)	120, 214, 348
FauNDI	CATATG	1 cut(s)	130
Fnu4HI	GCNGC	4 cut(s)	62, 105, 340, 386
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	4 cut(s)	62, 105, 340, 386
FspBI	CTAG	3 cut(s)	332, 390, 407
GlaI	GCGC	1 cut(s)	492
GluI	GCNGC	4 cut(s)	62, 105, 340, 386
GsuI	CTGGAG	1 cut(s)	33
HaeII	RGCGCY	1 cut(s)	494
HaeIII	GGCC	1 cut(s)	369
HapII	CCGG	2 cut(s)	175, 366
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	493
Hin1II	CATG	3 cut(s)	124, 218, 352
Hin6I	GCGC	1 cut(s)	491
HinP1I	GCGC	1 cut(s)	491
HinfI	GANTC	2 cut(s)	68, 125
HpaII	CCGG	2 cut(s)	175, 366
HphI	GGTGA	1 cut(s)	284
Hpy188I	TCNGA	1 cut(s)	323
Hpy188III	TCNNGA	4 cut(s)	72, 175, 332, 618
HpyAV	CCTTC	1 cut(s)	145
HpyCH4V	TGCA	4 cut(s)	107, 339, 447, 603
HpyF10VI	GCNNNNNNNGC	1 cut(s)	600
HpyF3I	CTNAG	2 cut(s)	380, 567
Hsp92II	CATG	3 cut(s)	124, 218, 352
HspAI	GCGC	1 cut(s)	491
Kpn2I	TCCGGA	1 cut(s)	174
KroI	GCCGGC	1 cut(s)	365
KroNI	GCCGGC	1 cut(s)	367
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	2 cut(s)	250, 555
Lsp1109I	GCAGC	4 cut(s)	73, 91, 351, 372
LweI	GCATC	3 cut(s)	308, 352, 499
MaeI	CTAG	3 cut(s)	332, 390, 407
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	2 cut(s)	278, 338
MfeI	CAATTG	1 cut(s)	401
MflI	RGATCY	1 cut(s)	328
MluCI	AATT	7 cut(s)	75, 275, 355, 401, 414, 499, 582
MlyI	GAGTC	1 cut(s)	77
MroI	TCCGGA	1 cut(s)	174
MroNI	GCCGGC	1 cut(s)	365
MseI	TTAA	4 cut(s)	165, 417, 495, 549
MspCI	CTTAAG	1 cut(s)	494
MspI	CCGG	2 cut(s)	175, 366
MspR9I	CCNGG	1 cut(s)	467
MunI	CAATTG	1 cut(s)	401
MvaI	CCWGG	1 cut(s)	467
MwoI	GCNNNNNNNGC	1 cut(s)	600
NaeI	GCCGGC	1 cut(s)	367
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	1 cut(s)	328
NgoMIV	GCCGGC	1 cut(s)	365
NheI	GCTAGC	1 cut(s)	406
NlaIII	CATG	3 cut(s)	124, 218, 352
PdiI	GCCGGC	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	125
PflMI	CCANNNNNTGG	1 cut(s)	71
PkrI	GCNGC	4 cut(s)	63, 106, 341, 387
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	465
PspPI	GGNCC	1 cut(s)	200
PstI	CTGCAG	1 cut(s)	449
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	328
SaqAI	TTAA	4 cut(s)	165, 417, 495, 549
SatI	GCNGC	4 cut(s)	62, 105, 340, 386
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	1 cut(s)	200
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	467
SetI	ASST	6 cut(s)	138, 156, 205, 560, 602, 612
SfaNI	GCATC	3 cut(s)	308, 352, 499
SfcI	CTRYAG	1 cut(s)	445
SinI	GGWCC	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	7 cut(s)	75, 275, 355, 401, 414, 499, 582
SsiI	CCGC	2 cut(s)	463, 592
SspMI	CTAG	3 cut(s)	332, 390, 407
StyD4I	CCNGG	1 cut(s)	465
StyI	CCWWGG	1 cut(s)	389
TasI	AATT	7 cut(s)	75, 275, 355, 401, 414, 499, 582
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	4 cut(s)	165, 417, 495, 549
Tru9I	TTAA	4 cut(s)	165, 417, 495, 549
TscAI	CASTG	1 cut(s)	384
TseI	GCWGC	4 cut(s)	61, 104, 339, 385
TspDTI	ATGAA	1 cut(s)	365
TspRI	CASTG	1 cut(s)	384
Van91I	CCANNNNNTGG	1 cut(s)	71
Vha464I	CTTAAG	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	3 cut(s)	275, 355, 499
XbaI	TCTAGA	1 cut(s)	331
XcmI	CCANNNNNNNNNTGG	2 cut(s)	215, 484
XmaJI	CCTAGG	1 cut(s)	389
XspI	CTAG	3 cut(s)	332, 390, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.