Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003649.1

Orthogroup ID

OG0003493

Physical Location & Seq

Genomic Coordinates Reverse (-)

84692 .. 85583

Gene Structure 892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgcatgagatggttccagggaaacgttttgatcgttaccacgaattgggtcagcatgcatttggtgaaaagcttggtctttacattgtggtgcttcagcaactcattgttgaagttggtgtttgcattgtgtacatggtcaccggaggaaaatctctgcagaaggtccatgacactgcgggctcagactgcaaaaagattaaattgacttacttcatcatgatctttgcctctgttcactttgtgctttcccaccttcccaacttcaactccatctccggcgtgtctttggccgcagctgtcatgtccttgagttactctaccatagcatggactgctgcggtagacaagggtgtggtagaaaatgttgattatggttacaaagccaagactactacaggaaattttttcaacttcttagctgcattgggtgaagtggcttttgcgtatgctggccataatgtagtcctcgaaatccaaacaacaattccttctacacctgagaagccttccaagatacctatgtggaatggagtcattgttgcctacataattgtggctttgtgctacttcccagttgctctagtaggatattacatatatggaaattcagttgatgacaacatctcgtctcattggaaagacccaaatggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

218

Amino Acids

23.92

Weight (kDa)

6.69

Isoelectric Point (pI)

16.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	3 - 212	9.8e-53	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48640 AT5G40780 AT5G40780 AT5G40780
fragaria_vesca	FvH4_6g52810 FvH4_6g52810
malus_domestica	MD09G1016600.v1.1 MD17G1017000.v1.1
prunus_persica	Prupe.3G300900_v2.0.a1
pyrus_communis	pycom111g01350 pycom17g01370
rosa_chinensis	RchiOBHm_Chr2g0174431 RchiOBHm_Chr2g0174471 RchiOBHm_Chr2g0174481 RchiOBHm_Chr2g0174521
rosa_laevigata	RLG00000014785 RLG00000022265 RLG00000022271
rosa_multiflora	Rmu_sc0001533.1_g000014 Rmu_sc0003649.1_g000016 Rmu_sc0003649.1_g000022 Rmu_sc0003649.1_g000026
rosa_roxburghii	Rroxscaffold_2G00078090 Rroxscaffold_2G00078200 Rroxscaffold_7G00209460
rosa_rugosa	Rorug02G0577100 Rorug02G0577200 Rorug05G0563500
rosa_samantha	Rh2BG669100 Rh2CG632000 Rh2CG632300 Rh2DG683000
rosa_wichuraiana	Rw2G053890 Rw2G053900 Rw6G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	46, 330
AccI	GTMKAC	1 cut(s)	345
AciI	CCGC	3 cut(s)	179, 294, 341
AclI	AACGTT	1 cut(s)	25
AcoI	YGGCCR	2 cut(s)	291, 454
AcsI	RAATTY	2 cut(s)	403, 607
AcuI	CTGAAG	1 cut(s)	80
AdeI	CACNNNGTG	1 cut(s)	244
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	46, 330
AgsI	TTSAA	3 cut(s)	113, 268, 412
AjnI	CCWGG	1 cut(s)	16
AjuI	GAANNNNNNNTTGG	2 cut(s)	471, 503
AluBI	AGCT	3 cut(s)	73, 299, 422
AluI	AGCT	3 cut(s)	73, 299, 422
Alw26I	GTCTC	1 cut(s)	636
AoxI	GGCC	2 cut(s)	291, 454
ApeKI	GCWGC	3 cut(s)	296, 338, 422
ApoI	RAATTY	2 cut(s)	403, 607
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	3 cut(s)	77, 133, 443
AvaII	GGWCC	1 cut(s)	166
BaeI	ACNNNNGTAYC	2 cut(s)	509, 542
BalI	TGGCCA	1 cut(s)	456
BanII	GRGCYC	1 cut(s)	185
BbvI	GCAGC	3 cut(s)	308, 325, 409
BccI	CCATC	2 cut(s)	4, 281
BciT130I	CCWGG	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	636
BfaI	CTAG	1 cut(s)	584
BfmI	CTRYAG	2 cut(s)	158, 396
BisI	GCNGC	4 cut(s)	294, 297, 339, 423
BlsI	GCNGC	4 cut(s)	295, 298, 340, 424
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	18
BmrI	ACTGGG	1 cut(s)	569
BmuI	ACTGGG	1 cut(s)	569
BpuEI	CTTGAG	1 cut(s)	331
BsaJI	CCNNGG	1 cut(s)	17
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	6 cut(s)	254, 260, 284, 290, 525, 555
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 330
Bse1I	ACTGG	1 cut(s)	575
BseBI	CCWGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	17
BseLI	CCNNNNNNNGG	2 cut(s)	46, 330
BseMII	CTCAG	2 cut(s)	198, 492
BseNI	ACTGG	1 cut(s)	575
BseXI	GCAGC	3 cut(s)	308, 325, 409
BshFI	GGCC	2 cut(s)	293, 456
BsiSI	CCGG	2 cut(s)	144, 279
BslI	CCNNNNNNNGG	2 cut(s)	46, 330
BsmAI	GTCTC	1 cut(s)	636
BsmBI	CGTCTC	1 cut(s)	636
BsnI	GGCC	2 cut(s)	293, 456
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	31, 222
BspACI	CCGC	3 cut(s)	179, 294, 341
BspANI	GGCC	2 cut(s)	293, 456
BspCNI	CTCAG	2 cut(s)	197, 493
BspHI	TCATGA	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	15
BspMAI	CTGCAG	1 cut(s)	162
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	575
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	2 cut(s)	31, 222
Bst2UI	CCWGG	1 cut(s)	18
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstAUI	TGTACA	1 cut(s)	132
BstC8I	GCNNGC	3 cut(s)	57, 181, 454
BstDEI	CTNAG	3 cut(s)	184, 418, 501
BstEII	GGTNACC	1 cut(s)	139
BstKTI	GATC	2 cut(s)	34, 225
BstMAI	GTCTC	1 cut(s)	636
BstMBI	GATC	2 cut(s)	31, 222
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 335
BstNI	CCWGG	1 cut(s)	18
BstNSI	RCATGY	1 cut(s)	59
BstPI	GGTNACC	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	2 cut(s)	158, 396
BstV1I	GCAGC	3 cut(s)	308, 325, 409
BsuRI	GGCC	2 cut(s)	293, 456
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	3 cut(s)	57, 181, 454
CciI	TCATGA	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	7 cut(s)	5, 56, 136, 170, 220, 304, 330
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	3 cut(s)	184, 418, 501
DpnI	GATC	2 cut(s)	33, 224
DpnII	GATC	2 cut(s)	31, 222
DraIII	CACNNNGTG	1 cut(s)	244
EaeI	YGGCCR	2 cut(s)	291, 454
Eco24I	GRGCYC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	80
Eco91I	GGTNACC	1 cut(s)	139
EcoO65I	GGTNACC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	16
EcoT22I	ATGCAT	2 cut(s)	6, 61
EcoT38I	GRGCYC	1 cut(s)	185
Esp3I	CGTCTC	1 cut(s)	636
FaeI	CATG	7 cut(s)	8, 59, 139, 173, 223, 307, 333
FatI	CATG	7 cut(s)	4, 55, 135, 169, 219, 303, 329
FauI	CCCGC	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	4 cut(s)	294, 297, 339, 423
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	4 cut(s)	294, 297, 339, 423
FspBI	CTAG	1 cut(s)	584
GluI	GCNGC	4 cut(s)	294, 297, 339, 423
HaeIII	GGCC	2 cut(s)	293, 456
HapII	CCGG	2 cut(s)	144, 279
Hin1II	CATG	7 cut(s)	8, 59, 139, 173, 223, 307, 333
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	1 cut(s)	534
HpaII	CCGG	2 cut(s)	144, 279
HphI	GGTGA	3 cut(s)	77, 133, 443
Hpy166II	GTNNAC	3 cut(s)	133, 238, 346
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	3 cut(s)	133, 238, 346
HpyAV	CCTTC	4 cut(s)	157, 266, 501, 519
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	6 cut(s)	4, 59, 126, 160, 192, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 335
HpyF3I	CTNAG	3 cut(s)	184, 418, 501
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	7 cut(s)	8, 59, 139, 173, 223, 307, 333
Kzo9I	GATC	2 cut(s)	31, 222
LpnPI	CCDG	8 cut(s)	3, 30, 157, 292, 384, 438, 513, 588
Lsp1109I	GCAGC	3 cut(s)	308, 325, 409
MaeI	CTAG	1 cut(s)	584
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	4 cut(s)	35, 139, 314, 377
MalI	GATC	2 cut(s)	33, 224
MboI	GATC	2 cut(s)	31, 222
MhlI	GDGCHC	1 cut(s)	185
MlsI	TGGCCA	1 cut(s)	456
MluCI	AATT	6 cut(s)	44, 203, 403, 486, 552, 607
MluNI	TGGCCA	1 cut(s)	456
MlyI	GAGTC	1 cut(s)	543
MnlI	CCTC	3 cut(s)	140, 241, 479
Mox20I	TGGCCA	1 cut(s)	456
Mph1103I	ATGCAT	2 cut(s)	6, 61
MscI	TGGCCA	1 cut(s)	456
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	2 cut(s)	89, 554
Msp20I	TGGCCA	1 cut(s)	456
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	2 cut(s)	144, 279
MspR9I	CCNGG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	189, 335
NdeII	GATC	2 cut(s)	31, 222
NlaIII	CATG	7 cut(s)	8, 59, 139, 173, 223, 307, 333
NlaIV	GGNNCC	1 cut(s)	15
NmuCI	GTSAC	1 cut(s)	139
NsiI	ATGCAT	2 cut(s)	6, 61
NspI	RCATGY	1 cut(s)	59
PaeI	GCATGC	1 cut(s)	59
PagI	TCATGA	1 cut(s)	219
PcsI	WCGNNNNNNNCGW	1 cut(s)	31
PflMI	CCANNNNNTGG	2 cut(s)	46, 330
PkrI	GCNGC	4 cut(s)	295, 298, 340, 424
PleI	GAGTC	1 cut(s)	542
PpsI	GAGTC	1 cut(s)	542
Psp1406I	AACGTT	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	16
PspEI	GGTNACC	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	162
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	2 cut(s)	89, 554
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	4 cut(s)	294, 297, 339, 423
Sau3AI	GATC	2 cut(s)	31, 222
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	543
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	8 cut(s)	28, 75, 168, 258, 301, 424, 502, 523
SfcI	CTRYAG	2 cut(s)	158, 396
SinI	GGWCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	2 cut(s)	89, 554
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
SphI	GCATGC	1 cut(s)	59
Sse9I	AATT	6 cut(s)	44, 203, 403, 486, 552, 607
SsiI	CCGC	3 cut(s)	179, 294, 341
SspMI	CTAG	1 cut(s)	584
StyD4I	CCNGG	1 cut(s)	16
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	471
TasI	AATT	6 cut(s)	44, 203, 403, 486, 552, 607
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	1 cut(s)	296
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	3 cut(s)	296, 338, 422
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	205
TspRI	CASTG	1 cut(s)	181
Van91I	CCANNNNNTGG	2 cut(s)	46, 330
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	2 cut(s)	403, 607
XceI	RCATGY	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	345
XspI	CTAG	1 cut(s)	584
Zsp2I	ATGCAT	2 cut(s)	6, 61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.