Rmu_sc0004594.1_g000018

Ferrous iron transport protein B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004594.1
OG0002736
Physical Location & Seq
Forward (+)
37614 .. 43777
6164 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2343 bp
atgtctgcagaggaaaaattaaggtttaagttcaataagaaactcaaaatagcagttggaaattctaagttttcaaatagtgggagaaagaaggctgaagataatgtcaatgagagtgagaatggtaagagagagaactataaatcgagtgtaagagataagaagtttcatactgctgaagaggggagtcggggagtttttgatagaaggaagagaatctatgttgatcgagatgcagcttgggaggctaacagtaatgaggaggcaccttataggaaggttttatctaaaaaaggacagaatcaattgaagtatggttatattaatgagaagaactacagtagatctccttcacgtcctcgttacaagtggggttctaatgagagtgcttctgaaactaaacggttttctcccaaggagagaagtgcaaaagtttataataacttcggcaatgaaaagaataatagtagatttccttctcgtccccgttctaagtgggattctgatggattagagaatacttctgaaactaaacgtttttctaccaaggttagaagtgcaaaagtttacagtgaaacaaaagttaaggacgctgatcattttggtaatgaaaagagtggcagcagatttccttcgcgtcctcgctctacatggggttctgatatcactgcttctgaaactaaacgtttttctcctaaggttagaagtgagaaacgttccaataaaaccaaagttaaggatgttgatgagatggaatccattacaactgatggtggtcggagtacttcactgaagaaacataaccaaataaaaccagacttgcaaaaatccccaaatatatctcttccaaatactgtgaagaaaaaagcacaggaaaagaatatctcggatgaaggatcagatgtgctagatggtcagcgaaagaagaagaagcgaatgcgactagacccatatgatatttcaaataaacgacttgatgatagtattgctacaaatgaaaacttaaaggagaaggaaaaagatgttgaggaaaaagctgagatatcaaagaacgcacaatttcgtgcaatccaaccaagtccatcaatcctttcctatgtcgaagataatttgttgggtcgtagacgcttgattgagctgagtagggcaggctacaacactgagctttctgcaccattggataatactcctttctctaccagctcagaaagagagcggattgaggaaaatatatttaggagtaaattgacattttttgctgctgcaaaagtttcatcatcatttccacctcctgatcttccggagattgcatttgcaggaaggtcaaatgttgggaaatcatcactacttaatgcacttaccagaaattggggtgttgcacgaacatcagataagcctggtcttactcagagtattaatttcttcaatcttggatcaaagctctgtttggttgatttgcctggatatggctttgcttatgccaaagaagaggttaaggatgcttgggaggagcttgtgaaggagtatgtttccacaagagttggtctaaaacgagtgtgcttacttattgatacgaaatggggaatgaagcctagggatcgtgaactcattgacctgatggaaaggtacaaattacatgcagacattcttggaaaaagtgttaagtttgatgagtgtgggtattaccttattagtggcactgtgtatatggtagaggatgatacagagccatctattttcttcatgtcctgcgtatctcaaaccaagtatcagatcttattaacgaaatcggatgcggttttcccgattgatgtagcacgccgtgcaatgcaaattgaagagagcttcaaggcaaataagtctgtggtccaacctgtgttcatgctaagcagagggccagcctcgtcctgttgctggtttcctcattttgttcttttttttgctggtattccaggccatgtctccggcagcaatcggatctttctaatctcatactactgctatgctttcgagggcgtttcatcttgttggagtggggtgaccggcttctccttccctcgaattgaaggcagcgtttcaagtttggctgttgctatttccttagcgatgtgtgacggaggcgctaaggttcagctggaaacaaccgaatcaattggggttggctatggcggcaacaagtttggtctggacttagtcagctgtacaagttctgatatcttgactacaggtggtggggatggtggcttgaccactgatgcgggtgttgggttgctcaccgggtcgggtctggatcccttacctttgggtttgggctcgagccccctctgcgtaagatggtcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

780

Amino Acids

87.21

Weight (kDa)

9.38

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 435 - 542 4.7e-18 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 438
AccB1I GGYRCC 1 cut(s) 265
AccB7I CCANNNNNTGG 1 cut(s) 1368
AccBSI CCGCTC 1 cut(s) 1216
AccI GTMKAC 1 cut(s) 1123
AccII CGCG 1 cut(s) 637
AccIII TCCGGA 1 cut(s) 1300
AciI CCGC 4 cut(s) 1216, 1796, 2169, 2258
AclI AACGTT 3 cut(s) 535, 685, 715
AclWI GGATC 6 cut(s) 904, 1441, 1605, 1985, 2285, 2298
AcsI RAATTY 1 cut(s) 61
AcuI CTGAAG 3 cut(s) 117, 198, 812
AdeI CACNNNGTG 1 cut(s) 1823
AfaI GTAC 3 cut(s) 784, 1628, 2203
AfiI CCNNNNNNNGG 3 cut(s) 1368, 1466, 1914
AgsI TTSAA 9 cut(s) 34, 75, 310, 963, 1426, 1838, 1849, 2066, 2079
AjiI CACGTC 1 cut(s) 356
AjnI CCWGG 3 cut(s) 1396, 1459, 1951
Alw26I GTCTC 1 cut(s) 1966
AlwI GGATC 6 cut(s) 904, 1441, 1605, 1985, 2285, 2298
Ama87I CYCGRG 1 cut(s) 2314
Aor13HI TCCGGA 1 cut(s) 1300
AoxI GGCC 2 cut(s) 1895, 1954
ApeKI GCWGC 6 cut(s) 236, 621, 1259, 1262, 1968, 2070
ApoI RAATTY 1 cut(s) 61
AseI ATTAAT 2 cut(s) 324, 1416
AspA2I CCTAGG 1 cut(s) 1592
AspLEI GCGC 1 cut(s) 2123
AspS9I GGNCC 2 cut(s) 1867, 1895
AsuC2I CCSGG 1 cut(s) 2278
AsuHPI GGTGA 2 cut(s) 2050, 2266
AvaI CYCGRG 1 cut(s) 2314
AvaII GGWCC 1 cut(s) 1867
AvrII CCTAGG 1 cut(s) 1592
AxyI CCTNAGG 1 cut(s) 696
BamHI GGATCC 1 cut(s) 2290
BanI GGYRCC 1 cut(s) 265
BanII GRGCYC 2 cut(s) 2315, 2321
BarI GAAGNNNNNNTAC 4 cut(s) 334, 366, 460, 492
BbvI GCAGC 6 cut(s) 248, 633, 1246, 1249, 1980, 2082
BccI CCATC 9 cut(s) 500, 745, 764, 905, 1090, 1612, 1738, 2231, 2328
BceAI ACGGC 1 cut(s) 1806
BciT130I CCWGG 3 cut(s) 1398, 1461, 1953
BclI TGATCA 1 cut(s) 595
BcnI CCSGG 1 cut(s) 2278
BcoDI GTCTC 1 cut(s) 1966
BfaI CTAG 3 cut(s) 908, 944, 1593
BfmI CTRYAG 3 cut(s) 6, 337, 2223
BfoI RGCGCY 1 cut(s) 2124
BglII AGATCT 2 cut(s) 344, 1773
BisI GCNGC 7 cut(s) 237, 622, 1260, 1263, 1969, 2071, 2170
BlnI CCTAGG 1 cut(s) 1592
BlpI GCTNAGC 1 cut(s) 1886
BlsI GCNGC 7 cut(s) 238, 623, 1261, 1264, 1970, 2072, 2171
BmcAI AGTACT 1 cut(s) 784
Bme1390I CCNGG 4 cut(s) 1398, 1461, 1953, 2278
Bme18I GGWCC 1 cut(s) 1867
BmeT110I CYCGRG 1 cut(s) 2314
BmgBI CACGTC 1 cut(s) 356
BmgT120I GGNCC 2 cut(s) 1867, 1895
BmiI GGNNCC 2 cut(s) 267, 2292
BmrFI CCNGG 4 cut(s) 1398, 1461, 1953, 2278
BmsI GCATC 4 cut(s) 223, 1489, 1783, 2245
Bpu10I CCTNAGC 2 cut(s) 2101, 2124
Bpu1102I GCTNAGC 1 cut(s) 1886
BpuMI CCSGG 1 cut(s) 2278
BsaJI CCNNGG 3 cut(s) 414, 546, 1592
BsaWI WCCGGW 1 cut(s) 1300
Bsc4I CCNNNNNNNGG 3 cut(s) 1368, 1466, 1914
Bse118I RCCGGY 1 cut(s) 2042
Bse21I CCTNAGG 1 cut(s) 696
Bse3DI GCAATG 2 cut(s) 457, 1833
BseAI TCCGGA 1 cut(s) 1300
BseBI CCWGG 3 cut(s) 1398, 1461, 1953
BseDI CCNNGG 3 cut(s) 414, 546, 1592
BseGI GGATG 6 cut(s) 745, 895, 1504, 1723, 1798, 2242
BseLI CCNNNNNNNGG 3 cut(s) 1368, 1466, 1914
BseMI GCAATG 2 cut(s) 457, 1833
BseMII CTCAG 5 cut(s) 1029, 1130, 1152, 1218, 1421
BseRI GAGGAG 2 cut(s) 275, 1523
BseXI GCAGC 6 cut(s) 248, 633, 1246, 1249, 1980, 2082
BsgI GTGCAG 1 cut(s) 1155
Bsh1236I CGCG 1 cut(s) 637
BshFI GGCC 2 cut(s) 1897, 1956
BshNI GGYRCC 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 2314
BsiSI CCGG 4 cut(s) 1301, 1965, 2043, 2277
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 3 cut(s) 1368, 1466, 1914
BsmAI GTCTC 1 cut(s) 1966
BsmFI GGGAC 1 cut(s) 468
BsmI GAATGC 1 cut(s) 942
BsnI GGCC 2 cut(s) 1897, 1956
BsoBI CYCGRG 1 cut(s) 2314
Bsp1286I GDGCHC 2 cut(s) 2315, 2321
Bsp13I TCCGGA 1 cut(s) 1300
Bsp1407I TGTACA 1 cut(s) 2201
Bsp1720I GCTNAGC 1 cut(s) 1886
BspACI CCGC 4 cut(s) 1216, 1796, 2169, 2258
BspANI GGCC 2 cut(s) 1897, 1956
BspCNI CTCAG 5 cut(s) 1030, 1131, 1153, 1217, 1420
BspEI TCCGGA 1 cut(s) 1300
BspFNI CGCG 1 cut(s) 637
BspLI GGNNCC 2 cut(s) 267, 2292
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 6 cut(s) 904, 1441, 1605, 1985, 2285, 2298
BspT107I GGYRCC 1 cut(s) 265
BsrBI CCGCTC 1 cut(s) 1216
BsrDI GCAATG 2 cut(s) 457, 1833
BsrFI RCCGGY 1 cut(s) 2042
BsrGI TGTACA 1 cut(s) 2201
BssAI RCCGGY 1 cut(s) 2042
BssECI CCNNGG 3 cut(s) 414, 546, 1592
BssT1I CCWWGG 3 cut(s) 414, 546, 1592
Bst2UI CCWGG 3 cut(s) 1398, 1461, 1953
Bst4CI ACNGT 6 cut(s) 254, 341, 405, 572, 856, 1702
Bst6I CTCTTC 5 cut(s) 174, 206, 849, 1482, 1833
BstAPI GCANNNNNTGC 1 cut(s) 1823
BstAUI TGTACA 1 cut(s) 2201
BstC8I GCNNGC 3 cut(s) 1150, 1819, 1899
BstEII GGTNACC 1 cut(s) 2038
BstF5I GGATG 6 cut(s) 745, 895, 1504, 1723, 1798, 2242
BstFNI CGCG 1 cut(s) 637
BstH2I RGCGCY 1 cut(s) 2124
BstHHI GCGC 1 cut(s) 2123
BstMAI GTCTC 1 cut(s) 1966
BstMWI GCNNNNNNNGC 4 cut(s) 245, 1823, 2169, 2325
BstNI CCWGG 3 cut(s) 1398, 1461, 1953
BstNSI RCATGY 1 cut(s) 1640
BstPI GGTNACC 1 cut(s) 2038
BstSCI CCNGG 4 cut(s) 1396, 1459, 1951, 2276
BstSFI CTRYAG 3 cut(s) 6, 337, 2223
BstUI CGCG 1 cut(s) 637
BstV1I GCAGC 6 cut(s) 248, 633, 1246, 1249, 1980, 2082
BstX2I RGATCY 4 cut(s) 344, 1773, 1977, 2290
BstYI RGATCY 4 cut(s) 344, 1773, 1977, 2290
Bsu36I CCTNAGG 1 cut(s) 696
BsuRI GGCC 2 cut(s) 1897, 1956
BtgZI GCGATG 1 cut(s) 2120
BtrI CACGTC 1 cut(s) 356
BtsCI GGATG 6 cut(s) 745, 895, 1504, 1723, 1798, 2242
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 6 cut(s) 577, 666, 788, 1158, 1698, 2250
Cac8I GCNNGC 3 cut(s) 1150, 1819, 1899
CfoI GCGC 1 cut(s) 2123
Cfr10I RCCGGY 1 cut(s) 2042
Cfr13I GGNCC 2 cut(s) 1867, 1895
CseI GACGC 3 cut(s) 599, 626, 1134
Csp6I GTAC 3 cut(s) 783, 1627, 2202
CspCI CAANNNNNGTGG 2 cut(s) 1522, 1557
CviAII CATG 5 cut(s) 651, 1637, 1744, 1882, 1958
CviQI GTAC 3 cut(s) 783, 1627, 2202
DraIII CACNNNGTG 1 cut(s) 1823
Eam1104I CTCTTC 5 cut(s) 174, 206, 849, 1482, 1833
EarI CTCTTC 5 cut(s) 174, 206, 849, 1482, 1833
Eco130I CCWWGG 3 cut(s) 414, 546, 1592
Eco24I GRGCYC 2 cut(s) 2315, 2321
Eco32I GATATC 3 cut(s) 664, 1044, 2215
Eco47I GGWCC 1 cut(s) 1867
Eco57I CTGAAG 3 cut(s) 117, 198, 812
Eco81I CCTNAGG 1 cut(s) 696
Eco88I CYCGRG 1 cut(s) 2314
Eco91I GGTNACC 1 cut(s) 2038
EcoO65I GGTNACC 1 cut(s) 2038
EcoRII CCWGG 3 cut(s) 1396, 1459, 1951
EcoRV GATATC 3 cut(s) 664, 1044, 2215
EcoT14I CCWWGG 3 cut(s) 414, 546, 1592
EcoT38I GRGCYC 2 cut(s) 2315, 2321
ErhI CCWWGG 3 cut(s) 414, 546, 1592
FaeI CATG 5 cut(s) 654, 1640, 1747, 1885, 1961
FaqI GGGAC 1 cut(s) 468
FatI CATG 5 cut(s) 650, 1636, 1743, 1881, 1957
FauI CCCGC 1 cut(s) 2251
FauNDI CATATG 1 cut(s) 952
FbaI TGATCA 1 cut(s) 595
FblI GTMKAC 1 cut(s) 1123
Fnu4HI GCNGC 7 cut(s) 237, 622, 1260, 1263, 1969, 2071, 2170
FokI GGATG 6 cut(s) 752, 902, 1511, 1730, 1805, 2249
FriOI GRGCYC 2 cut(s) 2315, 2321
Fsp4HI GCNGC 7 cut(s) 237, 622, 1260, 1263, 1969, 2071, 2170
FspBI CTAG 3 cut(s) 908, 944, 1593
GlaI GCGC 1 cut(s) 2122
GluI GCNGC 7 cut(s) 237, 622, 1260, 1263, 1969, 2071, 2170
HaeII RGCGCY 1 cut(s) 2124
HaeIII GGCC 2 cut(s) 1897, 1956
HapII CCGG 4 cut(s) 1301, 1965, 2043, 2277
HgaI GACGC 3 cut(s) 599, 626, 1134
HhaI GCGC 1 cut(s) 2123
Hin1II CATG 5 cut(s) 654, 1640, 1747, 1885, 1961
Hin6I GCGC 1 cut(s) 2121
HinP1I GCGC 1 cut(s) 2121
HinfI GANTC 6 cut(s) 187, 216, 301, 500, 755, 2147
HpaII CCGG 4 cut(s) 1301, 1965, 2043, 2277
HphI GGTGA 2 cut(s) 2050, 2266
Hpy166II GTNNAC 3 cut(s) 568, 1124, 1604
Hpy188III TCNNGA 8 cut(s) 230, 1292, 1301, 1601, 1804, 2186, 2218, 2288
Hpy8I GTNNAC 3 cut(s) 568, 1124, 1604
HpyCH4III ACNGT 6 cut(s) 254, 341, 405, 572, 856, 1702
HpyCH4IV ACGT 4 cut(s) 355, 535, 685, 715
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 1823, 2169, 2325
HpySE526I ACGT 4 cut(s) 355, 535, 685, 715
Hsp92II CATG 5 cut(s) 654, 1640, 1747, 1885, 1961
HspAI GCGC 1 cut(s) 2121
Kpn2I TCCGGA 1 cut(s) 1300
Ksp22I TGATCA 1 cut(s) 595
LmnI GCTCC 1 cut(s) 1510
Lsp1109I GCAGC 6 cut(s) 248, 633, 1246, 1249, 1980, 2082
LweI GCATC 4 cut(s) 223, 1489, 1783, 2245
MaeI CTAG 3 cut(s) 908, 944, 1593
MaeII ACGT 4 cut(s) 355, 535, 685, 715
MaeIII GTNAC 3 cut(s) 362, 2038, 2111
MbiI CCGCTC 1 cut(s) 1216
MfeI CAATTG 2 cut(s) 305, 2151
MflI RGATCY 4 cut(s) 344, 1773, 1977, 2290
MhlI GDGCHC 2 cut(s) 2315, 2321
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 5 cut(s) 37, 758, 1096, 1894, 2009
MroI TCCGGA 1 cut(s) 1300
MspA1I CMGCKG 2 cut(s) 2134, 2199
MspI CCGG 4 cut(s) 1301, 1965, 2043, 2277
MspR9I CCNGG 4 cut(s) 1398, 1461, 1953, 2278
MunI CAATTG 2 cut(s) 305, 2151
Mva1269I GAATGC 1 cut(s) 942
MvaI CCWGG 3 cut(s) 1398, 1461, 1953
MvnI CGCG 1 cut(s) 637
MwoI GCNNNNNNNGC 4 cut(s) 245, 1823, 2169, 2325
NciI CCSGG 1 cut(s) 2278
NdeI CATATG 1 cut(s) 952
NlaIII CATG 5 cut(s) 654, 1640, 1747, 1885, 1961
NlaIV GGNNCC 2 cut(s) 267, 2292
NmuCI GTSAC 2 cut(s) 2038, 2111
NspI RCATGY 1 cut(s) 1640
PaeR7I CTCGAG 1 cut(s) 2314
PctI GAATGC 1 cut(s) 942
PfeI GAWTC 5 cut(s) 216, 301, 500, 755, 2147
PflFI GACNNNGTC 1 cut(s) 2192
PflMI CCANNNNNTGG 1 cut(s) 1368
PkrI GCNGC 7 cut(s) 238, 623, 1261, 1264, 1970, 2072, 2171
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PshBI ATTAAT 2 cut(s) 324, 1416
PsiI TTATAA 1 cut(s) 438
Psp1406I AACGTT 3 cut(s) 535, 685, 715
Psp6I CCWGG 3 cut(s) 1396, 1459, 1951
PspEI GGTNACC 1 cut(s) 2038
PspGI CCWGG 3 cut(s) 1396, 1459, 1951
PspN4I GGNNCC 2 cut(s) 267, 2292
PspPI GGNCC 2 cut(s) 1867, 1895
PspXI VCTCGAGB 1 cut(s) 2314
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 4 cut(s) 344, 1773, 1977, 2290
PsyI GACNNNGTC 1 cut(s) 2192
PvuII CAGCTG 2 cut(s) 2134, 2199
RsaI GTAC 3 cut(s) 784, 1628, 2203
RsaNI GTAC 3 cut(s) 783, 1627, 2202
SatI GCNGC 7 cut(s) 237, 622, 1260, 1263, 1969, 2071, 2170
Sau96I GGNCC 2 cut(s) 1867, 1895
ScaI AGTACT 1 cut(s) 784
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 4 cut(s) 1398, 1461, 1953, 2278
SduI GDGCHC 2 cut(s) 2315, 2321
SfaNI GCATC 4 cut(s) 223, 1489, 1783, 2245
SfcI CTRYAG 3 cut(s) 6, 337, 2223
Sfr274I CTCGAG 1 cut(s) 2314
SinI GGWCC 1 cut(s) 1867
SlaI CTCGAG 1 cut(s) 2314
SmlI CTYRAG 1 cut(s) 2314
SmoI CTYRAG 1 cut(s) 2314
SsiI CCGC 4 cut(s) 1216, 1796, 2169, 2258
SspMI CTAG 3 cut(s) 908, 944, 1593
StyD4I CCNGG 4 cut(s) 1396, 1459, 1951, 2276
StyI CCWWGG 3 cut(s) 414, 546, 1592
TaaI ACNGT 6 cut(s) 254, 341, 405, 572, 856, 1702
TaiI ACGT 4 cut(s) 358, 538, 688, 718
TaqI TCGA 6 cut(s) 146, 229, 1101, 2010, 2059, 2315
TatI WGTACW 2 cut(s) 782, 2201
TauI GCSGC 1 cut(s) 2172
TfiI GAWTC 5 cut(s) 216, 301, 500, 755, 2147
TscAI CASTG 6 cut(s) 577, 673, 795, 1165, 1705, 2257
TseFI GTSAC 2 cut(s) 2038, 2111
TseI GCWGC 6 cut(s) 236, 621, 1259, 1262, 1968, 2070
Tsp45I GTSAC 2 cut(s) 2038, 2111
TspGWI ACGGA 1 cut(s) 2130
TspRI CASTG 6 cut(s) 577, 673, 795, 1165, 1705, 2257
Tth111I GACNNNGTC 1 cut(s) 2192
Van91I CCANNNNNTGG 1 cut(s) 1368
VpaK11BI GGWCC 1 cut(s) 1867
VspI ATTAAT 2 cut(s) 324, 1416
XapI RAATTY 1 cut(s) 61
XceI RCATGY 1 cut(s) 1640
XhoI CTCGAG 1 cut(s) 2314
XmaJI CCTAGG 1 cut(s) 1592
XmiI GTMKAC 1 cut(s) 1123
XspI CTAG 3 cut(s) 908, 944, 1593
ZrmI AGTACT 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.